data_4RXW # _model_server_result.job_id fqB_aifKnQcLsXFMo3AJ5A _model_server_result.datetime_utc '2024-11-24 13:25:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rxw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 4RXW # _exptl.entry_id 4RXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RXW _cell.length_a 81.43 _cell.length_b 81.43 _cell.length_c 33.75 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dodecameric 12 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 E CO CO . B CO 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 E CO CO . B CO 101 1_555 H O HOH . B HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc3 D NE2 HIS 10 D HIS 10 1_555 F CO CO . D CO 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 F CO CO . D CO 101 1_555 J O HOH . D HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RXW _atom_sites.fract_transf_matrix[1][1] 0.01228 _atom_sites.fract_transf_matrix[1][2] 0.00709 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CO B 1 101 1 CO CO . F 3 CO D 1 101 1 CO CO . G 4 HOH A 1 101 5 HOH HOH . G 4 HOH A 2 102 7 HOH HOH . G 4 HOH A 3 103 8 HOH HOH . G 4 HOH A 4 104 18 HOH HOH . G 4 HOH A 5 105 31 HOH HOH . G 4 HOH A 6 106 32 HOH HOH . G 4 HOH A 7 107 40 HOH HOH . G 4 HOH A 8 108 54 HOH HOH . G 4 HOH A 9 109 61 HOH HOH . G 4 HOH A 10 110 62 HOH HOH . G 4 HOH A 11 111 63 HOH HOH . G 4 HOH A 12 112 68 HOH HOH . G 4 HOH A 13 113 73 HOH HOH . G 4 HOH A 14 114 78 HOH HOH . G 4 HOH A 15 115 82 HOH HOH . G 4 HOH A 16 116 85 HOH HOH . G 4 HOH A 17 117 86 HOH HOH . G 4 HOH A 18 118 93 HOH HOH . H 4 HOH B 1 201 2 HOH HOH . H 4 HOH B 2 202 3 HOH HOH . H 4 HOH B 3 203 4 HOH HOH . H 4 HOH B 4 204 6 HOH HOH . H 4 HOH B 5 205 9 HOH HOH . H 4 HOH B 6 206 10 HOH HOH . H 4 HOH B 7 207 14 HOH HOH . H 4 HOH B 8 208 16 HOH HOH . H 4 HOH B 9 209 17 HOH HOH . H 4 HOH B 10 210 22 HOH HOH . H 4 HOH B 11 211 25 HOH HOH . H 4 HOH B 12 212 27 HOH HOH . H 4 HOH B 13 213 28 HOH HOH . H 4 HOH B 14 214 29 HOH HOH . H 4 HOH B 15 215 30 HOH HOH . H 4 HOH B 16 216 34 HOH HOH . H 4 HOH B 17 217 37 HOH HOH . H 4 HOH B 18 218 41 HOH HOH . H 4 HOH B 19 219 43 HOH HOH . H 4 HOH B 20 220 46 HOH HOH . H 4 HOH B 21 221 47 HOH HOH . H 4 HOH B 22 222 50 HOH HOH . H 4 HOH B 23 223 55 HOH HOH . H 4 HOH B 24 224 58 HOH HOH . H 4 HOH B 25 225 75 HOH HOH . H 4 HOH B 26 226 80 HOH HOH . H 4 HOH B 27 227 81 HOH HOH . H 4 HOH B 28 228 83 HOH HOH . H 4 HOH B 29 229 87 HOH HOH . H 4 HOH B 30 230 88 HOH HOH . H 4 HOH B 31 231 89 HOH HOH . H 4 HOH B 32 232 91 HOH HOH . H 4 HOH B 33 233 95 HOH HOH . H 4 HOH B 34 234 98 HOH HOH . H 4 HOH B 35 235 102 HOH HOH . H 4 HOH B 36 236 105 HOH HOH . I 4 HOH C 1 101 19 HOH HOH . I 4 HOH C 2 102 21 HOH HOH . I 4 HOH C 3 103 35 HOH HOH . I 4 HOH C 4 104 36 HOH HOH . I 4 HOH C 5 105 45 HOH HOH . I 4 HOH C 6 106 48 HOH HOH . I 4 HOH C 7 107 49 HOH HOH . I 4 HOH C 8 108 52 HOH HOH . I 4 HOH C 9 109 53 HOH HOH . I 4 HOH C 10 110 65 HOH HOH . I 4 HOH C 11 111 66 HOH HOH . I 4 HOH C 12 112 67 HOH HOH . I 4 HOH C 13 113 70 HOH HOH . I 4 HOH C 14 114 72 HOH HOH . I 4 HOH C 15 115 76 HOH HOH . I 4 HOH C 16 116 79 HOH HOH . I 4 HOH C 17 117 84 HOH HOH . I 4 HOH C 18 118 90 HOH HOH . I 4 HOH C 19 119 97 HOH HOH . I 4 HOH C 20 120 99 HOH HOH . I 4 HOH C 21 121 101 HOH HOH . I 4 HOH C 22 122 106 HOH HOH . J 4 HOH D 1 201 1 HOH HOH . J 4 HOH D 2 202 11 HOH HOH . J 4 HOH D 3 203 12 HOH HOH . J 4 HOH D 4 204 13 HOH HOH . J 4 HOH D 5 205 15 HOH HOH . J 4 HOH D 6 206 20 HOH HOH . J 4 HOH D 7 207 23 HOH HOH . J 4 HOH D 8 208 24 HOH HOH . J 4 HOH D 9 209 26 HOH HOH . J 4 HOH D 10 210 33 HOH HOH . J 4 HOH D 11 211 38 HOH HOH . J 4 HOH D 12 212 39 HOH HOH . J 4 HOH D 13 213 42 HOH HOH . J 4 HOH D 14 214 44 HOH HOH . J 4 HOH D 15 215 51 HOH HOH . J 4 HOH D 16 216 56 HOH HOH . J 4 HOH D 17 217 57 HOH HOH . J 4 HOH D 18 218 59 HOH HOH . J 4 HOH D 19 219 60 HOH HOH . J 4 HOH D 20 220 69 HOH HOH . J 4 HOH D 21 221 71 HOH HOH . J 4 HOH D 22 222 74 HOH HOH . J 4 HOH D 23 223 77 HOH HOH . J 4 HOH D 24 224 92 HOH HOH . J 4 HOH D 25 225 94 HOH HOH . J 4 HOH D 26 226 96 HOH HOH . J 4 HOH D 27 227 100 HOH HOH . J 4 HOH D 28 228 103 HOH HOH . J 4 HOH D 29 229 104 HOH HOH . J 4 HOH D 30 230 108 HOH HOH . J 4 HOH D 31 231 109 HOH HOH . J 4 HOH D 32 232 111 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.002 _atom_site.Cartn_y 0.003 _atom_site.Cartn_z -8.336 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 12.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 101 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #