data_4RY0
#
_model_server_result.job_id            6azCmVuNqiHz7nOLddya3Q 
_model_server_result.datetime_utc      '2024-10-12 20:22:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ry0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    4RY0 
#
_exptl.entry_id    4RY0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.91 
_cell.angle_gamma         90 
_cell.entry_id            4RY0 
_cell.length_a            93.11 
_cell.length_b            36.766 
_cell.length_c            95.48 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RY0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 150 A ASP 174 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc2 A OD1 ASP 153 A ASP 177 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc3 A OD1 ASP 154 A ASP 178 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc4 D CA CA . A CA 403 1_555 E O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc5 D CA CA . A CA 403 1_555 E O HOH . A HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc6 D CA CA . A CA 403 1_555 E O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4RY0 
_atom_sites.fract_transf_matrix[1][1]    0.01074 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00569 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027199 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011852 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RIP A 1 401 1 RIP RIP . 
C 3 CL A 1 402 1 CL CL . 
D 4 CA A 1 403 1 CA CA . 
E 5 HOH A 1 501 1 HOH HOH . 
E 5 HOH A 2 502 3 HOH HOH . 
E 5 HOH A 3 503 4 HOH HOH . 
E 5 HOH A 4 504 5 HOH HOH . 
E 5 HOH A 5 505 6 HOH HOH . 
E 5 HOH A 6 506 7 HOH HOH . 
E 5 HOH A 7 507 8 HOH HOH . 
E 5 HOH A 8 508 9 HOH HOH . 
E 5 HOH A 9 509 10 HOH HOH . 
E 5 HOH A 10 510 11 HOH HOH . 
E 5 HOH A 11 511 12 HOH HOH . 
E 5 HOH A 12 512 13 HOH HOH . 
E 5 HOH A 13 513 14 HOH HOH . 
E 5 HOH A 14 514 15 HOH HOH . 
E 5 HOH A 15 515 16 HOH HOH . 
E 5 HOH A 16 516 17 HOH HOH . 
E 5 HOH A 17 517 19 HOH HOH . 
E 5 HOH A 18 518 20 HOH HOH . 
E 5 HOH A 19 519 21 HOH HOH . 
E 5 HOH A 20 520 22 HOH HOH . 
E 5 HOH A 21 521 23 HOH HOH . 
E 5 HOH A 22 522 24 HOH HOH . 
E 5 HOH A 23 523 25 HOH HOH . 
E 5 HOH A 24 524 26 HOH HOH . 
E 5 HOH A 25 525 27 HOH HOH . 
E 5 HOH A 26 526 28 HOH HOH . 
E 5 HOH A 27 527 29 HOH HOH . 
E 5 HOH A 28 528 30 HOH HOH . 
E 5 HOH A 29 529 31 HOH HOH . 
E 5 HOH A 30 530 32 HOH HOH . 
E 5 HOH A 31 531 33 HOH HOH . 
E 5 HOH A 32 532 34 HOH HOH . 
E 5 HOH A 33 533 35 HOH HOH . 
E 5 HOH A 34 534 36 HOH HOH . 
E 5 HOH A 35 535 37 HOH HOH . 
E 5 HOH A 36 536 38 HOH HOH . 
E 5 HOH A 37 537 39 HOH HOH . 
E 5 HOH A 38 538 40 HOH HOH . 
E 5 HOH A 39 539 41 HOH HOH . 
E 5 HOH A 40 540 42 HOH HOH . 
E 5 HOH A 41 541 43 HOH HOH . 
E 5 HOH A 42 542 44 HOH HOH . 
E 5 HOH A 43 543 45 HOH HOH . 
E 5 HOH A 44 544 46 HOH HOH . 
E 5 HOH A 45 545 47 HOH HOH . 
E 5 HOH A 46 546 48 HOH HOH . 
E 5 HOH A 47 547 49 HOH HOH . 
E 5 HOH A 48 548 50 HOH HOH . 
E 5 HOH A 49 549 51 HOH HOH . 
E 5 HOH A 50 550 52 HOH HOH . 
E 5 HOH A 51 551 53 HOH HOH . 
E 5 HOH A 52 552 54 HOH HOH . 
E 5 HOH A 53 553 55 HOH HOH . 
E 5 HOH A 54 554 56 HOH HOH . 
E 5 HOH A 55 555 57 HOH HOH . 
E 5 HOH A 56 556 58 HOH HOH . 
E 5 HOH A 57 557 59 HOH HOH . 
E 5 HOH A 58 558 60 HOH HOH . 
E 5 HOH A 59 559 61 HOH HOH . 
E 5 HOH A 60 560 62 HOH HOH . 
E 5 HOH A 61 561 63 HOH HOH . 
E 5 HOH A 62 562 64 HOH HOH . 
E 5 HOH A 63 563 65 HOH HOH . 
E 5 HOH A 64 564 66 HOH HOH . 
E 5 HOH A 65 565 67 HOH HOH . 
E 5 HOH A 66 566 68 HOH HOH . 
E 5 HOH A 67 567 69 HOH HOH . 
E 5 HOH A 68 568 70 HOH HOH . 
E 5 HOH A 69 569 71 HOH HOH . 
E 5 HOH A 70 570 72 HOH HOH . 
E 5 HOH A 71 571 73 HOH HOH . 
E 5 HOH A 72 572 74 HOH HOH . 
E 5 HOH A 73 573 75 HOH HOH . 
E 5 HOH A 74 574 76 HOH HOH . 
E 5 HOH A 75 575 77 HOH HOH . 
E 5 HOH A 76 576 78 HOH HOH . 
E 5 HOH A 77 577 79 HOH HOH . 
E 5 HOH A 78 578 80 HOH HOH . 
E 5 HOH A 79 579 81 HOH HOH . 
E 5 HOH A 80 580 82 HOH HOH . 
E 5 HOH A 81 581 83 HOH HOH . 
E 5 HOH A 82 582 84 HOH HOH . 
E 5 HOH A 83 583 85 HOH HOH . 
E 5 HOH A 84 584 86 HOH HOH . 
E 5 HOH A 85 585 87 HOH HOH . 
E 5 HOH A 86 586 88 HOH HOH . 
E 5 HOH A 87 587 89 HOH HOH . 
E 5 HOH A 88 588 90 HOH HOH . 
E 5 HOH A 89 589 91 HOH HOH . 
E 5 HOH A 90 590 92 HOH HOH . 
E 5 HOH A 91 591 93 HOH HOH . 
E 5 HOH A 92 592 94 HOH HOH . 
E 5 HOH A 93 593 95 HOH HOH . 
E 5 HOH A 94 594 96 HOH HOH . 
E 5 HOH A 95 595 97 HOH HOH . 
E 5 HOH A 96 596 98 HOH HOH . 
E 5 HOH A 97 597 99 HOH HOH . 
E 5 HOH A 98 598 101 HOH HOH . 
E 5 HOH A 99 599 102 HOH HOH . 
E 5 HOH A 100 600 103 HOH HOH . 
E 5 HOH A 101 601 104 HOH HOH . 
E 5 HOH A 102 602 105 HOH HOH . 
E 5 HOH A 103 603 106 HOH HOH . 
E 5 HOH A 104 604 107 HOH HOH . 
E 5 HOH A 105 605 108 HOH HOH . 
E 5 HOH A 106 606 109 HOH HOH . 
E 5 HOH A 107 607 110 HOH HOH . 
E 5 HOH A 108 608 111 HOH HOH . 
E 5 HOH A 109 609 112 HOH HOH . 
E 5 HOH A 110 610 114 HOH HOH . 
E 5 HOH A 111 611 115 HOH HOH . 
E 5 HOH A 112 612 116 HOH HOH . 
E 5 HOH A 113 613 117 HOH HOH . 
E 5 HOH A 114 614 118 HOH HOH . 
E 5 HOH A 115 615 119 HOH HOH . 
E 5 HOH A 116 616 120 HOH HOH . 
E 5 HOH A 117 617 121 HOH HOH . 
E 5 HOH A 118 618 122 HOH HOH . 
E 5 HOH A 119 619 123 HOH HOH . 
E 5 HOH A 120 620 124 HOH HOH . 
E 5 HOH A 121 621 125 HOH HOH . 
E 5 HOH A 122 622 126 HOH HOH . 
E 5 HOH A 123 623 127 HOH HOH . 
E 5 HOH A 124 624 128 HOH HOH . 
E 5 HOH A 125 625 129 HOH HOH . 
E 5 HOH A 126 626 130 HOH HOH . 
E 5 HOH A 127 627 131 HOH HOH . 
E 5 HOH A 128 628 133 HOH HOH . 
E 5 HOH A 129 629 134 HOH HOH . 
E 5 HOH A 130 630 136 HOH HOH . 
E 5 HOH A 131 631 137 HOH HOH . 
E 5 HOH A 132 632 138 HOH HOH . 
E 5 HOH A 133 633 139 HOH HOH . 
E 5 HOH A 134 634 140 HOH HOH . 
E 5 HOH A 135 635 141 HOH HOH . 
E 5 HOH A 136 636 142 HOH HOH . 
E 5 HOH A 137 637 143 HOH HOH . 
E 5 HOH A 138 638 144 HOH HOH . 
E 5 HOH A 139 639 145 HOH HOH . 
E 5 HOH A 140 640 146 HOH HOH . 
E 5 HOH A 141 641 147 HOH HOH . 
E 5 HOH A 142 642 148 HOH HOH . 
E 5 HOH A 143 643 150 HOH HOH . 
E 5 HOH A 144 644 151 HOH HOH . 
E 5 HOH A 145 645 152 HOH HOH . 
E 5 HOH A 146 646 154 HOH HOH . 
E 5 HOH A 147 647 156 HOH HOH . 
E 5 HOH A 148 648 157 HOH HOH . 
E 5 HOH A 149 649 158 HOH HOH . 
E 5 HOH A 150 650 160 HOH HOH . 
E 5 HOH A 151 651 161 HOH HOH . 
E 5 HOH A 152 652 163 HOH HOH . 
E 5 HOH A 153 653 164 HOH HOH . 
E 5 HOH A 154 654 165 HOH HOH . 
E 5 HOH A 155 655 166 HOH HOH . 
E 5 HOH A 156 656 167 HOH HOH . 
E 5 HOH A 157 657 169 HOH HOH . 
E 5 HOH A 158 658 171 HOH HOH . 
E 5 HOH A 159 659 172 HOH HOH . 
E 5 HOH A 160 660 173 HOH HOH . 
E 5 HOH A 161 661 174 HOH HOH . 
E 5 HOH A 162 662 175 HOH HOH . 
E 5 HOH A 163 663 176 HOH HOH . 
E 5 HOH A 164 664 177 HOH HOH . 
E 5 HOH A 165 665 181 HOH HOH . 
E 5 HOH A 166 666 185 HOH HOH . 
E 5 HOH A 167 667 189 HOH HOH . 
E 5 HOH A 168 668 190 HOH HOH . 
E 5 HOH A 169 669 191 HOH HOH . 
E 5 HOH A 170 670 193 HOH HOH . 
E 5 HOH A 171 671 194 HOH HOH . 
E 5 HOH A 172 672 195 HOH HOH . 
E 5 HOH A 173 673 196 HOH HOH . 
E 5 HOH A 174 674 197 HOH HOH . 
E 5 HOH A 175 675 198 HOH HOH . 
E 5 HOH A 176 676 199 HOH HOH . 
E 5 HOH A 177 677 200 HOH HOH . 
E 5 HOH A 178 678 202 HOH HOH . 
E 5 HOH A 179 679 207 HOH HOH . 
E 5 HOH A 180 680 208 HOH HOH . 
E 5 HOH A 181 681 209 HOH HOH . 
E 5 HOH A 182 682 211 HOH HOH . 
E 5 HOH A 183 683 212 HOH HOH . 
E 5 HOH A 184 684 215 HOH HOH . 
E 5 HOH A 185 685 216 HOH HOH . 
E 5 HOH A 186 686 217 HOH HOH . 
E 5 HOH A 187 687 219 HOH HOH . 
E 5 HOH A 188 688 222 HOH HOH . 
E 5 HOH A 189 689 223 HOH HOH . 
E 5 HOH A 190 690 225 HOH HOH . 
E 5 HOH A 191 691 229 HOH HOH . 
E 5 HOH A 192 692 230 HOH HOH . 
E 5 HOH A 193 693 231 HOH HOH . 
E 5 HOH A 194 694 232 HOH HOH . 
E 5 HOH A 195 695 233 HOH HOH . 
E 5 HOH A 196 696 234 HOH HOH . 
E 5 HOH A 197 697 235 HOH HOH . 
E 5 HOH A 198 698 236 HOH HOH . 
E 5 HOH A 199 699 239 HOH HOH . 
E 5 HOH A 200 700 241 HOH HOH . 
E 5 HOH A 201 701 242 HOH HOH . 
E 5 HOH A 202 702 243 HOH HOH . 
E 5 HOH A 203 703 244 HOH HOH . 
E 5 HOH A 204 704 247 HOH HOH . 
E 5 HOH A 205 705 248 HOH HOH . 
E 5 HOH A 206 706 249 HOH HOH . 
E 5 HOH A 207 707 250 HOH HOH . 
E 5 HOH A 208 708 251 HOH HOH . 
E 5 HOH A 209 709 253 HOH HOH . 
E 5 HOH A 210 710 254 HOH HOH . 
E 5 HOH A 211 711 255 HOH HOH . 
E 5 HOH A 212 712 256 HOH HOH . 
E 5 HOH A 213 713 258 HOH HOH . 
E 5 HOH A 214 714 259 HOH HOH . 
E 5 HOH A 215 715 260 HOH HOH . 
E 5 HOH A 216 716 261 HOH HOH . 
E 5 HOH A 217 717 262 HOH HOH . 
E 5 HOH A 218 718 263 HOH HOH . 
E 5 HOH A 219 719 265 HOH HOH . 
E 5 HOH A 220 720 266 HOH HOH . 
E 5 HOH A 221 721 268 HOH HOH . 
E 5 HOH A 222 722 272 HOH HOH . 
E 5 HOH A 223 723 273 HOH HOH . 
E 5 HOH A 224 724 274 HOH HOH . 
E 5 HOH A 225 725 277 HOH HOH . 
E 5 HOH A 226 726 279 HOH HOH . 
E 5 HOH A 227 727 280 HOH HOH . 
E 5 HOH A 228 728 281 HOH HOH . 
E 5 HOH A 229 729 282 HOH HOH . 
E 5 HOH A 230 730 283 HOH HOH . 
E 5 HOH A 231 731 284 HOH HOH . 
E 5 HOH A 232 732 285 HOH HOH . 
E 5 HOH A 233 733 286 HOH HOH . 
E 5 HOH A 234 734 287 HOH HOH . 
E 5 HOH A 235 735 288 HOH HOH . 
E 5 HOH A 236 736 289 HOH HOH . 
E 5 HOH A 237 737 290 HOH HOH . 
E 5 HOH A 238 738 291 HOH HOH . 
E 5 HOH A 239 739 292 HOH HOH . 
E 5 HOH A 240 740 293 HOH HOH . 
E 5 HOH A 241 741 294 HOH HOH . 
E 5 HOH A 242 742 295 HOH HOH . 
E 5 HOH A 243 743 296 HOH HOH . 
E 5 HOH A 244 744 297 HOH HOH . 
E 5 HOH A 245 745 298 HOH HOH . 
E 5 HOH A 246 746 299 HOH HOH . 
E 5 HOH A 247 747 301 HOH HOH . 
E 5 HOH A 248 748 302 HOH HOH . 
E 5 HOH A 249 749 303 HOH HOH . 
E 5 HOH A 250 750 304 HOH HOH . 
E 5 HOH A 251 751 305 HOH HOH . 
E 5 HOH A 252 752 306 HOH HOH . 
E 5 HOH A 253 753 307 HOH HOH . 
E 5 HOH A 254 754 308 HOH HOH . 
E 5 HOH A 255 755 309 HOH HOH . 
E 5 HOH A 256 756 310 HOH HOH . 
E 5 HOH A 257 757 311 HOH HOH . 
E 5 HOH A 258 758 312 HOH HOH . 
E 5 HOH A 259 759 313 HOH HOH . 
E 5 HOH A 260 760 314 HOH HOH . 
E 5 HOH A 261 761 315 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               26.903 
_atom_site.Cartn_y               4.462 
_atom_site.Cartn_z               3.439 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        15.85 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#