data_4RYL # _model_server_result.job_id lZrR6ZoXhQm3entrvYlbbQ _model_server_result.datetime_utc '2025-01-03 00:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ryl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4RYL # _exptl.entry_id 4RYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.34 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RYL _cell.length_a 70.691 _cell.length_b 70.691 _cell.length_c 173.559 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H18 N4 O2' _chem_comp.formula_weight 298.34 _chem_comp.id 3ZG _chem_comp.mon_nstd_flag . _chem_comp.name 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C8 3ZG doub 1 n y N2 C7 3ZG sing 2 n y C8 C9 3ZG sing 3 n y C7 C6 3ZG doub 4 n y C9 C10 3ZG doub 5 n y C6 C10 3ZG sing 6 n y C6 C5 3ZG sing 7 n y C10 C11 3ZG sing 8 n y C5 C4 3ZG doub 9 n y C11 C3 3ZG doub 10 n y C4 C3 3ZG sing 11 n y C3 N1 3ZG sing 12 n n O1 C2 3ZG doub 13 n n N1 C2 3ZG sing 14 n n C2 N 3ZG sing 15 n n N C1 3ZG sing 16 n n C1 C 3ZG sing 17 n n O C 3ZG doub 18 n n C N3 3ZG sing 19 n n N3 C12 3ZG sing 20 n n N3 C15 3ZG sing 21 n n C12 C13 3ZG sing 22 n n C13 C14 3ZG sing 23 n n C15 C14 3ZG sing 24 n n C4 H1 3ZG sing 25 n n C5 H2 3ZG sing 26 n n N1 H3 3ZG sing 27 n n C7 H4 3ZG sing 28 n n C8 H5 3ZG sing 29 n n C9 H6 3ZG sing 30 n n C11 H7 3ZG sing 31 n n C12 H8 3ZG sing 32 n n C12 H9 3ZG sing 33 n n C13 H10 3ZG sing 34 n n C13 H11 3ZG sing 35 n n C14 H12 3ZG sing 36 n n C14 H13 3ZG sing 37 n n C15 H14 3ZG sing 38 n n C15 H15 3ZG sing 39 n n N H16 3ZG sing 40 n n C1 H17 3ZG sing 41 n n C1 H18 3ZG sing 42 n n # _atom_sites.entry_id 4RYL _atom_sites.fract_transf_matrix[1][1] 0.014146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3ZG A 1 601 2000 3ZG XXX . C 3 UNX A 1 602 1000 UNX UNX . D 3 UNX A 1 603 1001 UNX UNX . E 4 HOH A 1 701 1 HOH HOH . E 4 HOH A 2 702 2 HOH HOH . E 4 HOH A 3 703 3 HOH HOH . E 4 HOH A 4 704 4 HOH HOH . E 4 HOH A 5 705 5 HOH HOH . E 4 HOH A 6 706 6 HOH HOH . E 4 HOH A 7 707 7 HOH HOH . E 4 HOH A 8 708 8 HOH HOH . E 4 HOH A 9 709 9 HOH HOH . E 4 HOH A 10 710 10 HOH HOH . E 4 HOH A 11 711 11 HOH HOH . E 4 HOH A 12 712 12 HOH HOH . E 4 HOH A 13 713 14 HOH HOH . E 4 HOH A 14 714 15 HOH HOH . E 4 HOH A 15 715 16 HOH HOH . E 4 HOH A 16 716 17 HOH HOH . E 4 HOH A 17 717 18 HOH HOH . E 4 HOH A 18 718 19 HOH HOH . E 4 HOH A 19 719 20 HOH HOH . E 4 HOH A 20 720 21 HOH HOH . E 4 HOH A 21 721 22 HOH HOH . E 4 HOH A 22 722 23 HOH HOH . E 4 HOH A 23 723 24 HOH HOH . E 4 HOH A 24 724 25 HOH HOH . E 4 HOH A 25 725 26 HOH HOH . E 4 HOH A 26 726 27 HOH HOH . E 4 HOH A 27 727 28 HOH HOH . E 4 HOH A 28 728 29 HOH HOH . E 4 HOH A 29 729 30 HOH HOH . E 4 HOH A 30 730 31 HOH HOH . E 4 HOH A 31 731 32 HOH HOH . E 4 HOH A 32 732 33 HOH HOH . E 4 HOH A 33 733 34 HOH HOH . E 4 HOH A 34 734 35 HOH HOH . E 4 HOH A 35 735 36 HOH HOH . E 4 HOH A 36 736 37 HOH HOH . E 4 HOH A 37 737 38 HOH HOH . E 4 HOH A 38 738 39 HOH HOH . E 4 HOH A 39 739 40 HOH HOH . E 4 HOH A 40 740 41 HOH HOH . E 4 HOH A 41 741 42 HOH HOH . E 4 HOH A 42 742 43 HOH HOH . E 4 HOH A 43 743 44 HOH HOH . E 4 HOH A 44 744 45 HOH HOH . E 4 HOH A 45 745 46 HOH HOH . E 4 HOH A 46 746 47 HOH HOH . E 4 HOH A 47 747 48 HOH HOH . E 4 HOH A 48 748 49 HOH HOH . E 4 HOH A 49 749 50 HOH HOH . E 4 HOH A 50 750 51 HOH HOH . E 4 HOH A 51 751 52 HOH HOH . E 4 HOH A 52 752 53 HOH HOH . E 4 HOH A 53 753 54 HOH HOH . E 4 HOH A 54 754 55 HOH HOH . E 4 HOH A 55 755 56 HOH HOH . E 4 HOH A 56 756 57 HOH HOH . E 4 HOH A 57 757 58 HOH HOH . E 4 HOH A 58 758 60 HOH HOH . E 4 HOH A 59 759 61 HOH HOH . E 4 HOH A 60 760 62 HOH HOH . E 4 HOH A 61 761 63 HOH HOH . E 4 HOH A 62 762 64 HOH HOH . E 4 HOH A 63 763 66 HOH HOH . E 4 HOH A 64 764 67 HOH HOH . E 4 HOH A 65 765 68 HOH HOH . E 4 HOH A 66 766 69 HOH HOH . E 4 HOH A 67 767 70 HOH HOH . E 4 HOH A 68 768 71 HOH HOH . E 4 HOH A 69 769 72 HOH HOH . E 4 HOH A 70 770 73 HOH HOH . E 4 HOH A 71 771 74 HOH HOH . E 4 HOH A 72 772 75 HOH HOH . E 4 HOH A 73 773 76 HOH HOH . E 4 HOH A 74 774 77 HOH HOH . E 4 HOH A 75 775 78 HOH HOH . E 4 HOH A 76 776 79 HOH HOH . E 4 HOH A 77 777 80 HOH HOH . E 4 HOH A 78 778 81 HOH HOH . E 4 HOH A 79 779 82 HOH HOH . E 4 HOH A 80 780 83 HOH HOH . E 4 HOH A 81 781 84 HOH HOH . E 4 HOH A 82 782 85 HOH HOH . E 4 HOH A 83 783 86 HOH HOH . E 4 HOH A 84 784 87 HOH HOH . E 4 HOH A 85 785 88 HOH HOH . E 4 HOH A 86 786 89 HOH HOH . E 4 HOH A 87 787 90 HOH HOH . E 4 HOH A 88 788 91 HOH HOH . E 4 HOH A 89 789 92 HOH HOH . E 4 HOH A 90 790 93 HOH HOH . E 4 HOH A 91 791 95 HOH HOH . E 4 HOH A 92 792 96 HOH HOH . E 4 HOH A 93 793 98 HOH HOH . E 4 HOH A 94 794 99 HOH HOH . E 4 HOH A 95 795 100 HOH HOH . E 4 HOH A 96 796 101 HOH HOH . E 4 HOH A 97 797 103 HOH HOH . E 4 HOH A 98 798 104 HOH HOH . E 4 HOH A 99 799 105 HOH HOH . E 4 HOH A 100 800 106 HOH HOH . E 4 HOH A 101 801 107 HOH HOH . E 4 HOH A 102 802 108 HOH HOH . E 4 HOH A 103 803 109 HOH HOH . E 4 HOH A 104 804 110 HOH HOH . E 4 HOH A 105 805 111 HOH HOH . E 4 HOH A 106 806 112 HOH HOH . E 4 HOH A 107 807 113 HOH HOH . E 4 HOH A 108 808 114 HOH HOH . E 4 HOH A 109 809 115 HOH HOH . E 4 HOH A 110 810 116 HOH HOH . E 4 HOH A 111 811 117 HOH HOH . E 4 HOH A 112 812 118 HOH HOH . E 4 HOH A 113 813 119 HOH HOH . E 4 HOH A 114 814 120 HOH HOH . E 4 HOH A 115 815 121 HOH HOH . E 4 HOH A 116 816 122 HOH HOH . E 4 HOH A 117 817 123 HOH HOH . E 4 HOH A 118 818 124 HOH HOH . E 4 HOH A 119 819 125 HOH HOH . E 4 HOH A 120 820 126 HOH HOH . E 4 HOH A 121 821 127 HOH HOH . E 4 HOH A 122 822 128 HOH HOH . E 4 HOH A 123 823 129 HOH HOH . E 4 HOH A 124 824 131 HOH HOH . E 4 HOH A 125 825 132 HOH HOH . E 4 HOH A 126 826 134 HOH HOH . E 4 HOH A 127 827 135 HOH HOH . E 4 HOH A 128 828 137 HOH HOH . E 4 HOH A 129 829 138 HOH HOH . E 4 HOH A 130 830 139 HOH HOH . E 4 HOH A 131 831 140 HOH HOH . E 4 HOH A 132 832 141 HOH HOH . E 4 HOH A 133 833 142 HOH HOH . E 4 HOH A 134 834 143 HOH HOH . E 4 HOH A 135 835 144 HOH HOH . E 4 HOH A 136 836 145 HOH HOH . E 4 HOH A 137 837 146 HOH HOH . E 4 HOH A 138 838 147 HOH HOH . E 4 HOH A 139 839 148 HOH HOH . E 4 HOH A 140 840 149 HOH HOH . E 4 HOH A 141 841 150 HOH HOH . E 4 HOH A 142 842 151 HOH HOH . E 4 HOH A 143 843 152 HOH HOH . E 4 HOH A 144 844 155 HOH HOH . E 4 HOH A 145 845 156 HOH HOH . E 4 HOH A 146 846 157 HOH HOH . E 4 HOH A 147 847 158 HOH HOH . E 4 HOH A 148 848 159 HOH HOH . E 4 HOH A 149 849 160 HOH HOH . E 4 HOH A 150 850 161 HOH HOH . E 4 HOH A 151 851 162 HOH HOH . E 4 HOH A 152 852 163 HOH HOH . E 4 HOH A 153 853 164 HOH HOH . E 4 HOH A 154 854 165 HOH HOH . E 4 HOH A 155 855 166 HOH HOH . E 4 HOH A 156 856 167 HOH HOH . E 4 HOH A 157 857 168 HOH HOH . E 4 HOH A 158 858 170 HOH HOH . E 4 HOH A 159 859 171 HOH HOH . E 4 HOH A 160 860 172 HOH HOH . E 4 HOH A 161 861 173 HOH HOH . E 4 HOH A 162 862 174 HOH HOH . E 4 HOH A 163 863 175 HOH HOH . E 4 HOH A 164 864 176 HOH HOH . E 4 HOH A 165 865 177 HOH HOH . E 4 HOH A 166 866 178 HOH HOH . E 4 HOH A 167 867 179 HOH HOH . E 4 HOH A 168 868 180 HOH HOH . E 4 HOH A 169 869 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 3ZG . . . B 2 -4.655 -0.492 -13.011 1 26.89 ? C4 3ZG 601 A 1 HETATM 2 C C5 3ZG . . . B 2 -4.995 -0.924 -14.26 1 27.01 ? C5 3ZG 601 A 1 HETATM 3 C C6 3ZG . . . B 2 -5.609 -0.048 -15.192 1 27.13 ? C6 3ZG 601 A 1 HETATM 4 N N1 3ZG . . . B 2 -4.475 1.174 -11.302 1 28.46 ? N1 3ZG 601 A 1 HETATM 5 C C7 3ZG . . . B 2 -6.033 -0.433 -16.492 1 26.47 ? C7 3ZG 601 A 1 HETATM 6 C C8 3ZG . . . B 2 -6.81 1.66 -16.982 1 29.54 ? C8 3ZG 601 A 1 HETATM 7 N N2 3ZG . . . B 2 -6.628 0.382 -17.358 1 27.46 ? N2 3ZG 601 A 1 HETATM 8 C C9 3ZG . . . B 2 -6.444 2.158 -15.765 1 29.22 ? C9 3ZG 601 A 1 HETATM 9 C C10 3ZG . . . B 2 -5.845 1.288 -14.814 1 28.22 ? C10 3ZG 601 A 1 HETATM 10 C C11 3ZG . . . B 2 -5.487 1.704 -13.507 1 27.88 ? C11 3ZG 601 A 1 HETATM 11 C C12 3ZG . . . B 2 -3.303 6.269 -7.6 1 34.95 ? C12 3ZG 601 A 1 HETATM 12 N N3 3ZG . . . B 2 -4.559 5.537 -7.65 1 33.25 ? N3 3ZG 601 A 1 HETATM 13 C C13 3ZG . . . B 2 -3.732 7.632 -7.141 1 36.2 ? C13 3ZG 601 A 1 HETATM 14 C C14 3ZG . . . B 2 -4.915 7.401 -6.341 1 36.42 ? C14 3ZG 601 A 1 HETATM 15 C C15 3ZG . . . B 2 -5.646 6.314 -7.048 1 36.12 ? C15 3ZG 601 A 1 HETATM 16 O O1 3ZG . . . B 2 -4.475 3.467 -11.364 1 28.07 ? O1 3ZG 601 A 1 HETATM 17 C C2 3ZG . . . B 2 -4.386 2.418 -10.74 1 27.36 ? C2 3ZG 601 A 1 HETATM 18 N N 3ZG . . . B 2 -4.125 2.402 -9.433 1 29.66 ? N 3ZG 601 A 1 HETATM 19 C C1 3ZG . . . B 2 -3.63 3.586 -8.771 1 28.95 ? C1 3ZG 601 A 1 HETATM 20 C C 3ZG . . . B 2 -4.805 4.334 -8.182 1 28.56 ? C 3ZG 601 A 1 HETATM 21 O O 3ZG . . . B 2 -5.917 3.863 -8.197 1 27.1 ? O 3ZG 601 A 1 HETATM 22 C C3 3ZG . . . B 2 -4.903 0.821 -12.612 1 28.42 ? C3 3ZG 601 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #