data_4RYN # _model_server_result.job_id CPY-bB4FwpjZfQSPwbs3DQ _model_server_result.datetime_utc '2024-11-23 12:01:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ryn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 4RYN # _exptl.entry_id 4RYN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RYN _cell.length_a 33.614 _cell.length_b 49.377 _cell.length_c 97.852 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 329 n n C2 C1 MPG sing 330 n n C3 C4 MPG sing 331 n n C4 C5 MPG sing 332 n n C5 C6 MPG sing 333 n n C6 C7 MPG sing 334 n n C7 C8 MPG sing 335 n n C8 C9 MPG sing 336 n n C9 C10 MPG doub 337 z n C10 C11 MPG sing 338 n n C11 C12 MPG sing 339 n n C12 C13 MPG sing 340 n n C13 C14 MPG sing 341 n n C14 C15 MPG sing 342 n n C15 C16 MPG sing 343 n n C16 C17 MPG sing 344 n n C17 C18 MPG sing 345 n n O1 C1 MPG sing 346 n n O1 CX3 MPG sing 347 n n CXD O2 MPG sing 348 n n CXD C21 MPG sing 349 n n CXD CX3 MPG sing 350 n n C21 O3 MPG sing 351 n n C2 H21C MPG sing 352 n n C2 H22C MPG sing 353 n n C3 H31C MPG sing 354 n n C3 H32C MPG sing 355 n n CX3 O4 MPG doub 356 n n C4 H41C MPG sing 357 n n C4 H42C MPG sing 358 n n C5 H51C MPG sing 359 n n C5 H52C MPG sing 360 n n C6 H61C MPG sing 361 n n C6 H62C MPG sing 362 n n C7 H71C MPG sing 363 n n C7 H72C MPG sing 364 n n C8 H81C MPG sing 365 n n C8 H82C MPG sing 366 n n C9 H9 MPG sing 367 n n C10 H10 MPG sing 368 n n C11 H111 MPG sing 369 n n C11 H112 MPG sing 370 n n C12 H121 MPG sing 371 n n C12 H122 MPG sing 372 n n C13 H131 MPG sing 373 n n C13 H132 MPG sing 374 n n C14 H141 MPG sing 375 n n C14 H142 MPG sing 376 n n C15 H151 MPG sing 377 n n C15 H152 MPG sing 378 n n C16 H161 MPG sing 379 n n C16 H162 MPG sing 380 n n C17 H171 MPG sing 381 n n C17 H172 MPG sing 382 n n C18 H181 MPG sing 383 n n C18 H182 MPG sing 384 n n C18 H183 MPG sing 385 n n C1 HX31 MPG sing 386 n n C1 HX32 MPG sing 387 n n CXD HXD MPG sing 388 n n O2 H2 MPG sing 389 n n C21 H211 MPG sing 390 n n C21 H212 MPG sing 391 n n O3 H3 MPG sing 392 n n # _atom_sites.entry_id 4RYN _atom_sites.fract_transf_matrix[1][1] 0.02975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPG A 1 201 2 MPG MPG . C 2 MPG A 1 202 3 MPG MPG . D 2 MPG A 1 203 5 MPG MPG . E 2 MPG A 1 204 8 MPG MPG . F 2 MPG A 1 205 9 MPG MPG . G 2 MPG A 1 206 10 MPG MPG . H 2 MPG A 1 207 11 MPG MPG . I 2 MPG A 1 208 12 MPG MPG . J 2 MPG A 1 209 14 MPG MPG . K 3 LMU A 1 210 1 LMU LMU . L 4 CAC A 1 211 1 CAC CAC . M 5 PGE A 1 212 1 PGE PGE . N 6 HOH A 1 301 1 HOH HOH . N 6 HOH A 2 302 2 HOH HOH . N 6 HOH A 3 303 3 HOH HOH . N 6 HOH A 4 304 4 HOH HOH . N 6 HOH A 5 305 5 HOH HOH . N 6 HOH A 6 306 6 HOH HOH . N 6 HOH A 7 307 7 HOH HOH . N 6 HOH A 8 308 8 HOH HOH . N 6 HOH A 9 309 9 HOH HOH . N 6 HOH A 10 310 10 HOH HOH . N 6 HOH A 11 311 11 HOH HOH . N 6 HOH A 12 312 12 HOH HOH . N 6 HOH A 13 313 13 HOH HOH . N 6 HOH A 14 314 14 HOH HOH . N 6 HOH A 15 315 15 HOH HOH . N 6 HOH A 16 316 16 HOH HOH . N 6 HOH A 17 317 17 HOH HOH . N 6 HOH A 18 318 18 HOH HOH . N 6 HOH A 19 319 19 HOH HOH . N 6 HOH A 20 320 21 HOH HOH . N 6 HOH A 21 321 22 HOH HOH . N 6 HOH A 22 322 23 HOH HOH . N 6 HOH A 23 323 24 HOH HOH . N 6 HOH A 24 324 25 HOH HOH . N 6 HOH A 25 325 26 HOH HOH . N 6 HOH A 26 326 27 HOH HOH . N 6 HOH A 27 327 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 MPG . . . H 2 50.391 -12.613 -9.102 1 64.69 ? C10 MPG 207 A 1 HETATM 2 C C11 MPG . . . H 2 49.45 -12.715 -10.34 1 59.05 ? C11 MPG 207 A 1 HETATM 3 C C12 MPG . . . H 2 50.071 -13.594 -11.384 1 58.27 ? C12 MPG 207 A 1 HETATM 4 C C13 MPG . . . H 2 49.746 -13.048 -12.783 1 53.71 ? C13 MPG 207 A 1 HETATM 5 C C14 MPG . . . H 2 50.597 -11.784 -13.056 1 51.43 ? C14 MPG 207 A 1 HETATM 6 C C15 MPG . . . H 2 52.078 -12.13 -12.953 1 55.26 ? C15 MPG 207 A 1 HETATM 7 C C16 MPG . . . H 2 52.941 -10.908 -13.438 1 55.93 ? C16 MPG 207 A 1 HETATM 8 C C17 MPG . . . H 2 53.757 -11.305 -14.694 1 53.71 ? C17 MPG 207 A 1 HETATM 9 C C18 MPG . . . H 2 54.713 -10.167 -15.075 1 45.95 ? C18 MPG 207 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #