data_4RYN # _model_server_result.job_id c-KuBj9VQGxKtCuiHbQ84Q _model_server_result.datetime_utc '2024-11-23 11:54:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ryn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":212}' # _entry.id 4RYN # _exptl.entry_id 4RYN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RYN _cell.length_a 33.614 _cell.length_b 49.377 _cell.length_c 97.852 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 393 n n C1 C2 PGE sing 394 n n C1 H1 PGE sing 395 n n C1 H12 PGE sing 396 n n O1 HO1 PGE sing 397 n n C2 O2 PGE sing 398 n n C2 H2 PGE sing 399 n n C2 H22 PGE sing 400 n n O2 C3 PGE sing 401 n n C3 C4 PGE sing 402 n n C3 H3 PGE sing 403 n n C3 H32 PGE sing 404 n n C4 O3 PGE sing 405 n n C4 H4 PGE sing 406 n n C4 H42 PGE sing 407 n n O4 C6 PGE sing 408 n n O4 HO4 PGE sing 409 n n C6 C5 PGE sing 410 n n C6 H6 PGE sing 411 n n C6 H62 PGE sing 412 n n C5 O3 PGE sing 413 n n C5 H5 PGE sing 414 n n C5 H52 PGE sing 415 n n # _atom_sites.entry_id 4RYN _atom_sites.fract_transf_matrix[1][1] 0.02975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPG A 1 201 2 MPG MPG . C 2 MPG A 1 202 3 MPG MPG . D 2 MPG A 1 203 5 MPG MPG . E 2 MPG A 1 204 8 MPG MPG . F 2 MPG A 1 205 9 MPG MPG . G 2 MPG A 1 206 10 MPG MPG . H 2 MPG A 1 207 11 MPG MPG . I 2 MPG A 1 208 12 MPG MPG . J 2 MPG A 1 209 14 MPG MPG . K 3 LMU A 1 210 1 LMU LMU . L 4 CAC A 1 211 1 CAC CAC . M 5 PGE A 1 212 1 PGE PGE . N 6 HOH A 1 301 1 HOH HOH . N 6 HOH A 2 302 2 HOH HOH . N 6 HOH A 3 303 3 HOH HOH . N 6 HOH A 4 304 4 HOH HOH . N 6 HOH A 5 305 5 HOH HOH . N 6 HOH A 6 306 6 HOH HOH . N 6 HOH A 7 307 7 HOH HOH . N 6 HOH A 8 308 8 HOH HOH . N 6 HOH A 9 309 9 HOH HOH . N 6 HOH A 10 310 10 HOH HOH . N 6 HOH A 11 311 11 HOH HOH . N 6 HOH A 12 312 12 HOH HOH . N 6 HOH A 13 313 13 HOH HOH . N 6 HOH A 14 314 14 HOH HOH . N 6 HOH A 15 315 15 HOH HOH . N 6 HOH A 16 316 16 HOH HOH . N 6 HOH A 17 317 17 HOH HOH . N 6 HOH A 18 318 18 HOH HOH . N 6 HOH A 19 319 19 HOH HOH . N 6 HOH A 20 320 21 HOH HOH . N 6 HOH A 21 321 22 HOH HOH . N 6 HOH A 22 322 23 HOH HOH . N 6 HOH A 23 323 24 HOH HOH . N 6 HOH A 24 324 25 HOH HOH . N 6 HOH A 25 325 26 HOH HOH . N 6 HOH A 26 326 27 HOH HOH . N 6 HOH A 27 327 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . M 5 42.233 1.483 -33.637 1 40.15 ? C1 PGE 212 A 1 HETATM 2 O O1 PGE . . . M 5 42.097 1.262 -35.024 1 47.85 ? O1 PGE 212 A 1 HETATM 3 C C2 PGE . . . M 5 41.375 0.503 -32.876 1 34.69 ? C2 PGE 212 A 1 HETATM 4 O O2 PGE . . . M 5 41.959 -0.83 -32.969 1 35.83 ? O2 PGE 212 A 1 HETATM 5 C C3 PGE . . . M 5 41.351 -1.818 -32.088 1 36.27 ? C3 PGE 212 A 1 HETATM 6 C C4 PGE . . . M 5 41.423 -3.183 -32.727 1 31.66 ? C4 PGE 212 A 1 HETATM 7 O O4 PGE . . . M 5 38.181 -3.623 -35.353 1 37.18 ? O4 PGE 212 A 1 HETATM 8 C C6 PGE . . . M 5 39.397 -4.303 -35.652 1 34.34 ? C6 PGE 212 A 1 HETATM 9 C C5 PGE . . . M 5 40.263 -4.444 -34.366 1 37.13 ? C5 PGE 212 A 1 HETATM 10 O O3 PGE . . . M 5 40.609 -3.183 -33.905 1 33.64 ? O3 PGE 212 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #