data_4RYQ # _model_server_result.job_id VZl0WIn9c1kNdVqQCOalcw _model_server_result.datetime_utc '2024-11-05 06:42:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ryq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 4RYQ # _exptl.entry_id 4RYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RYQ _cell.length_a 28.714 _cell.length_b 54.618 _cell.length_c 106.905 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 237 n n C2 C1 MPG sing 238 n n C3 C4 MPG sing 239 n n C4 C5 MPG sing 240 n n C5 C6 MPG sing 241 n n C6 C7 MPG sing 242 n n C7 C8 MPG sing 243 n n C8 C9 MPG sing 244 n n C9 C10 MPG doub 245 z n C10 C11 MPG sing 246 n n C11 C12 MPG sing 247 n n C12 C13 MPG sing 248 n n C13 C14 MPG sing 249 n n C14 C15 MPG sing 250 n n C15 C16 MPG sing 251 n n C16 C17 MPG sing 252 n n C17 C18 MPG sing 253 n n O1 C1 MPG sing 254 n n O1 CX3 MPG sing 255 n n CXD O2 MPG sing 256 n n CXD C21 MPG sing 257 n n CXD CX3 MPG sing 258 n n C21 O3 MPG sing 259 n n C2 H21C MPG sing 260 n n C2 H22C MPG sing 261 n n C3 H31C MPG sing 262 n n C3 H32C MPG sing 263 n n CX3 O4 MPG doub 264 n n C4 H41C MPG sing 265 n n C4 H42C MPG sing 266 n n C5 H51C MPG sing 267 n n C5 H52C MPG sing 268 n n C6 H61C MPG sing 269 n n C6 H62C MPG sing 270 n n C7 H71C MPG sing 271 n n C7 H72C MPG sing 272 n n C8 H81C MPG sing 273 n n C8 H82C MPG sing 274 n n C9 H9 MPG sing 275 n n C10 H10 MPG sing 276 n n C11 H111 MPG sing 277 n n C11 H112 MPG sing 278 n n C12 H121 MPG sing 279 n n C12 H122 MPG sing 280 n n C13 H131 MPG sing 281 n n C13 H132 MPG sing 282 n n C14 H141 MPG sing 283 n n C14 H142 MPG sing 284 n n C15 H151 MPG sing 285 n n C15 H152 MPG sing 286 n n C16 H161 MPG sing 287 n n C16 H162 MPG sing 288 n n C17 H171 MPG sing 289 n n C17 H172 MPG sing 290 n n C18 H181 MPG sing 291 n n C18 H182 MPG sing 292 n n C18 H183 MPG sing 293 n n C1 HX31 MPG sing 294 n n C1 HX32 MPG sing 295 n n CXD HXD MPG sing 296 n n O2 H2 MPG sing 297 n n C21 H211 MPG sing 298 n n C21 H212 MPG sing 299 n n O3 H3 MPG sing 300 n n # _atom_sites.entry_id 4RYQ _atom_sites.fract_transf_matrix[1][1] 0.034826 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPG A 1 201 1 MPG MPG . C 2 MPG A 1 202 5 MPG MPG . D 2 MPG A 1 203 6 MPG MPG . E 2 MPG A 1 204 7 MPG MPG . F 2 MPG A 1 205 8 MPG MPG . G 2 MPG A 1 206 9 MPG MPG . H 2 MPG A 1 207 10 MPG MPG . I 3 HOH A 1 301 1 HOH HOH . I 3 HOH A 2 302 2 HOH HOH . I 3 HOH A 3 303 3 HOH HOH . I 3 HOH A 4 304 4 HOH HOH . I 3 HOH A 5 305 5 HOH HOH . I 3 HOH A 6 306 6 HOH HOH . I 3 HOH A 7 307 7 HOH HOH . I 3 HOH A 8 308 8 HOH HOH . I 3 HOH A 9 309 9 HOH HOH . I 3 HOH A 10 310 10 HOH HOH . I 3 HOH A 11 311 11 HOH HOH . I 3 HOH A 12 312 12 HOH HOH . I 3 HOH A 13 313 13 HOH HOH . I 3 HOH A 14 314 14 HOH HOH . I 3 HOH A 15 315 15 HOH HOH . I 3 HOH A 16 316 16 HOH HOH . I 3 HOH A 17 317 17 HOH HOH . I 3 HOH A 18 318 18 HOH HOH . I 3 HOH A 19 319 19 HOH HOH . I 3 HOH A 20 320 20 HOH HOH . I 3 HOH A 21 321 21 HOH HOH . I 3 HOH A 22 322 22 HOH HOH . I 3 HOH A 23 323 23 HOH HOH . I 3 HOH A 24 324 26 HOH HOH . I 3 HOH A 25 325 28 HOH HOH . I 3 HOH A 26 326 29 HOH HOH . I 3 HOH A 27 327 30 HOH HOH . I 3 HOH A 28 328 31 HOH HOH . I 3 HOH A 29 329 33 HOH HOH . I 3 HOH A 30 330 35 HOH HOH . I 3 HOH A 31 331 36 HOH HOH . I 3 HOH A 32 332 37 HOH HOH . I 3 HOH A 33 333 38 HOH HOH . I 3 HOH A 34 334 39 HOH HOH . I 3 HOH A 35 335 40 HOH HOH . I 3 HOH A 36 336 41 HOH HOH . I 3 HOH A 37 337 42 HOH HOH . I 3 HOH A 38 338 43 HOH HOH . I 3 HOH A 39 339 44 HOH HOH . I 3 HOH A 40 340 45 HOH HOH . I 3 HOH A 41 341 46 HOH HOH . I 3 HOH A 42 342 47 HOH HOH . I 3 HOH A 43 343 48 HOH HOH . I 3 HOH A 44 344 49 HOH HOH . I 3 HOH A 45 345 50 HOH HOH . I 3 HOH A 46 346 52 HOH HOH . I 3 HOH A 47 347 53 HOH HOH . I 3 HOH A 48 348 54 HOH HOH . I 3 HOH A 49 349 55 HOH HOH . I 3 HOH A 50 350 56 HOH HOH . I 3 HOH A 51 351 58 HOH HOH . I 3 HOH A 52 352 59 HOH HOH . I 3 HOH A 53 353 60 HOH HOH . I 3 HOH A 54 354 62 HOH HOH . I 3 HOH A 55 355 63 HOH HOH . I 3 HOH A 56 356 65 HOH HOH . I 3 HOH A 57 357 67 HOH HOH . I 3 HOH A 58 358 69 HOH HOH . I 3 HOH A 59 359 70 HOH HOH . I 3 HOH A 60 360 71 HOH HOH . I 3 HOH A 61 361 72 HOH HOH . I 3 HOH A 62 362 73 HOH HOH . I 3 HOH A 63 363 74 HOH HOH . I 3 HOH A 64 364 75 HOH HOH . I 3 HOH A 65 365 76 HOH HOH . I 3 HOH A 66 366 77 HOH HOH . I 3 HOH A 67 367 78 HOH HOH . I 3 HOH A 68 368 79 HOH HOH . I 3 HOH A 69 369 80 HOH HOH . I 3 HOH A 70 370 81 HOH HOH . I 3 HOH A 71 371 82 HOH HOH . I 3 HOH A 72 372 83 HOH HOH . I 3 HOH A 73 373 85 HOH HOH . I 3 HOH A 74 374 86 HOH HOH . I 3 HOH A 75 375 87 HOH HOH . I 3 HOH A 76 376 88 HOH HOH . I 3 HOH A 77 377 91 HOH HOH . I 3 HOH A 78 378 93 HOH HOH . I 3 HOH A 79 379 96 HOH HOH . I 3 HOH A 80 380 97 HOH HOH . I 3 HOH A 81 381 98 HOH HOH . I 3 HOH A 82 382 99 HOH HOH . I 3 HOH A 83 383 100 HOH HOH . I 3 HOH A 84 384 101 HOH HOH . I 3 HOH A 85 385 102 HOH HOH . I 3 HOH A 86 386 104 HOH HOH . I 3 HOH A 87 387 105 HOH HOH . I 3 HOH A 88 388 106 HOH HOH . I 3 HOH A 89 389 107 HOH HOH . I 3 HOH A 90 390 108 HOH HOH . I 3 HOH A 91 391 109 HOH HOH . I 3 HOH A 92 392 111 HOH HOH . I 3 HOH A 93 393 112 HOH HOH . I 3 HOH A 94 394 113 HOH HOH . I 3 HOH A 95 395 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . H 2 13.47 -2.221 27.888 1 49.4 ? C2 MPG 207 A 1 HETATM 2 C C3 MPG . . . H 2 14.162 -0.83 28 1 44.23 ? C3 MPG 207 A 1 HETATM 3 C C4 MPG . . . H 2 13.481 0.038 29.093 1 36.05 ? C4 MPG 207 A 1 HETATM 4 C C5 MPG . . . H 2 13.787 -0.543 30.534 1 52.3 ? C5 MPG 207 A 1 HETATM 5 C C6 MPG . . . H 2 12.605 -0.225 31.479 1 48.54 ? C6 MPG 207 A 1 HETATM 6 C C7 MPG . . . H 2 13.083 -0.238 32.965 1 44.63 ? C7 MPG 207 A 1 HETATM 7 C C8 MPG . . . H 2 12.524 -1.454 33.693 1 51.04 ? C8 MPG 207 A 1 HETATM 8 C C9 MPG . . . H 2 13.098 -1.455 35.14 1 57.01 ? C9 MPG 207 A 1 HETATM 9 C C10 MPG . . . H 2 12.476 -2.119 36.182 1 64.44 ? C10 MPG 207 A 1 HETATM 10 C C11 MPG . . . H 2 11.15 -2.918 35.991 1 42.88 ? C11 MPG 207 A 1 HETATM 11 C C12 MPG . . . H 2 10.38 -2.899 37.277 1 43.92 ? C12 MPG 207 A 1 HETATM 12 C C13 MPG . . . H 2 9.95 -1.458 37.601 1 45.86 ? C13 MPG 207 A 1 HETATM 13 C C14 MPG . . . H 2 9.001 -1.46 38.822 1 41.65 ? C14 MPG 207 A 1 HETATM 14 C C15 MPG . . . H 2 8.481 -0.054 39.11 1 42.95 ? C15 MPG 207 A 1 HETATM 15 C C16 MPG . . . H 2 9.391 0.677 40.161 1 41.68 ? C16 MPG 207 A 1 HETATM 16 C C17 MPG . . . H 2 8.497 1.472 41.144 1 46.93 ? C17 MPG 207 A 1 HETATM 17 C C18 MPG . . . H 2 9.355 2.418 41.996 1 47.05 ? C18 MPG 207 A 1 HETATM 18 O O1 MPG . . . H 2 12.523 -3.496 26.027 1 42.36 ? O1 MPG 207 A 1 HETATM 19 C C1 MPG . . . H 2 12.452 -2.248 26.746 1 42.91 ? C1 MPG 207 A 1 HETATM 20 C CXD MPG . . . H 2 13.436 -4.413 23.811 1 59.98 ? CXD MPG 207 A 1 HETATM 21 O O2 MPG . . . H 2 13.803 -3.655 22.713 1 73.92 ? O2 MPG 207 A 1 HETATM 22 C C21 MPG . . . H 2 12.017 -4.883 23.624 1 59.62 ? C21 MPG 207 A 1 HETATM 23 O O3 MPG . . . H 2 12.011 -5.915 22.645 1 57.13 ? O3 MPG 207 A 1 HETATM 24 O O4 MPG . . . H 2 14.594 -2.947 25.235 1 60.94 ? O4 MPG 207 A 1 HETATM 25 C CX3 MPG . . . H 2 13.574 -3.564 25.064 1 59.56 ? CX3 MPG 207 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 25 #