data_4RYR # _model_server_result.job_id xum1aB04Jsp5fn6bYnikeA _model_server_result.datetime_utc '2024-11-05 08:39:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ryr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4RYR # _exptl.entry_id 4RYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RYR _cell.length_a 28.906 _cell.length_b 54.658 _cell.length_c 107.579 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 246 n n C2 C1 MPG sing 247 n n C3 C4 MPG sing 248 n n C4 C5 MPG sing 249 n n C5 C6 MPG sing 250 n n C6 C7 MPG sing 251 n n C7 C8 MPG sing 252 n n C8 C9 MPG sing 253 n n C9 C10 MPG doub 254 z n C10 C11 MPG sing 255 n n C11 C12 MPG sing 256 n n C12 C13 MPG sing 257 n n C13 C14 MPG sing 258 n n C14 C15 MPG sing 259 n n C15 C16 MPG sing 260 n n C16 C17 MPG sing 261 n n C17 C18 MPG sing 262 n n O1 C1 MPG sing 263 n n O1 CX3 MPG sing 264 n n CXD O2 MPG sing 265 n n CXD C21 MPG sing 266 n n CXD CX3 MPG sing 267 n n C21 O3 MPG sing 268 n n C2 H21C MPG sing 269 n n C2 H22C MPG sing 270 n n C3 H31C MPG sing 271 n n C3 H32C MPG sing 272 n n CX3 O4 MPG doub 273 n n C4 H41C MPG sing 274 n n C4 H42C MPG sing 275 n n C5 H51C MPG sing 276 n n C5 H52C MPG sing 277 n n C6 H61C MPG sing 278 n n C6 H62C MPG sing 279 n n C7 H71C MPG sing 280 n n C7 H72C MPG sing 281 n n C8 H81C MPG sing 282 n n C8 H82C MPG sing 283 n n C9 H9 MPG sing 284 n n C10 H10 MPG sing 285 n n C11 H111 MPG sing 286 n n C11 H112 MPG sing 287 n n C12 H121 MPG sing 288 n n C12 H122 MPG sing 289 n n C13 H131 MPG sing 290 n n C13 H132 MPG sing 291 n n C14 H141 MPG sing 292 n n C14 H142 MPG sing 293 n n C15 H151 MPG sing 294 n n C15 H152 MPG sing 295 n n C16 H161 MPG sing 296 n n C16 H162 MPG sing 297 n n C17 H171 MPG sing 298 n n C17 H172 MPG sing 299 n n C18 H181 MPG sing 300 n n C18 H182 MPG sing 301 n n C18 H183 MPG sing 302 n n C1 HX31 MPG sing 303 n n C1 HX32 MPG sing 304 n n CXD HXD MPG sing 305 n n O2 H2 MPG sing 306 n n C21 H211 MPG sing 307 n n C21 H212 MPG sing 308 n n O3 H3 MPG sing 309 n n # _atom_sites.entry_id 4RYR _atom_sites.fract_transf_matrix[1][1] 0.034595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPG A 1 201 1 MPG MPG . C 2 MPG A 1 202 5 MPG MPG . D 2 MPG A 1 203 6 MPG MPG . E 2 MPG A 1 204 7 MPG MPG . F 2 MPG A 1 205 8 MPG MPG . G 2 MPG A 1 206 9 MPG MPG . H 2 MPG A 1 207 10 MPG MPG . I 2 MPG A 1 208 13 MPG MPG . J 2 MPG A 1 209 14 MPG MPG . K 3 DMS A 1 210 1 DMS DMS . L 3 DMS A 1 211 3 DMS DMS . M 3 DMS A 1 212 5 DMS DMS . N 3 DMS A 1 213 6 DMS DMS . O 4 HOH A 1 301 1 HOH HOH . O 4 HOH A 2 302 2 HOH HOH . O 4 HOH A 3 303 3 HOH HOH . O 4 HOH A 4 304 4 HOH HOH . O 4 HOH A 5 305 5 HOH HOH . O 4 HOH A 6 306 6 HOH HOH . O 4 HOH A 7 307 7 HOH HOH . O 4 HOH A 8 308 8 HOH HOH . O 4 HOH A 9 309 9 HOH HOH . O 4 HOH A 10 310 10 HOH HOH . O 4 HOH A 11 311 11 HOH HOH . O 4 HOH A 12 312 12 HOH HOH . O 4 HOH A 13 313 13 HOH HOH . O 4 HOH A 14 314 14 HOH HOH . O 4 HOH A 15 315 15 HOH HOH . O 4 HOH A 16 316 16 HOH HOH . O 4 HOH A 17 317 17 HOH HOH . O 4 HOH A 18 318 18 HOH HOH . O 4 HOH A 19 319 19 HOH HOH . O 4 HOH A 20 320 20 HOH HOH . O 4 HOH A 21 321 22 HOH HOH . O 4 HOH A 22 322 23 HOH HOH . O 4 HOH A 23 323 24 HOH HOH . O 4 HOH A 24 324 25 HOH HOH . O 4 HOH A 25 325 26 HOH HOH . O 4 HOH A 26 326 27 HOH HOH . O 4 HOH A 27 327 28 HOH HOH . O 4 HOH A 28 328 29 HOH HOH . O 4 HOH A 29 329 30 HOH HOH . O 4 HOH A 30 330 31 HOH HOH . O 4 HOH A 31 331 32 HOH HOH . O 4 HOH A 32 332 33 HOH HOH . O 4 HOH A 33 333 34 HOH HOH . O 4 HOH A 34 334 35 HOH HOH . O 4 HOH A 35 335 36 HOH HOH . O 4 HOH A 36 336 37 HOH HOH . O 4 HOH A 37 337 38 HOH HOH . O 4 HOH A 38 338 41 HOH HOH . O 4 HOH A 39 339 42 HOH HOH . O 4 HOH A 40 340 43 HOH HOH . O 4 HOH A 41 341 44 HOH HOH . O 4 HOH A 42 342 45 HOH HOH . O 4 HOH A 43 343 46 HOH HOH . O 4 HOH A 44 344 47 HOH HOH . O 4 HOH A 45 345 48 HOH HOH . O 4 HOH A 46 346 50 HOH HOH . O 4 HOH A 47 347 51 HOH HOH . O 4 HOH A 48 348 52 HOH HOH . O 4 HOH A 49 349 53 HOH HOH . O 4 HOH A 50 350 54 HOH HOH . O 4 HOH A 51 351 55 HOH HOH . O 4 HOH A 52 352 56 HOH HOH . O 4 HOH A 53 353 57 HOH HOH . O 4 HOH A 54 354 59 HOH HOH . O 4 HOH A 55 355 60 HOH HOH . O 4 HOH A 56 356 61 HOH HOH . O 4 HOH A 57 357 62 HOH HOH . O 4 HOH A 58 358 63 HOH HOH . O 4 HOH A 59 359 64 HOH HOH . O 4 HOH A 60 360 65 HOH HOH . O 4 HOH A 61 361 66 HOH HOH . O 4 HOH A 62 362 68 HOH HOH . O 4 HOH A 63 363 69 HOH HOH . O 4 HOH A 64 364 70 HOH HOH . O 4 HOH A 65 365 71 HOH HOH . O 4 HOH A 66 366 72 HOH HOH . O 4 HOH A 67 367 74 HOH HOH . O 4 HOH A 68 368 75 HOH HOH . O 4 HOH A 69 369 76 HOH HOH . O 4 HOH A 70 370 77 HOH HOH . O 4 HOH A 71 371 78 HOH HOH . O 4 HOH A 72 372 79 HOH HOH . O 4 HOH A 73 373 80 HOH HOH . O 4 HOH A 74 374 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . B 2 17.283 7.822 16.967 1 37.31 ? C2 MPG 201 A 1 HETATM 2 C C3 MPG . . . B 2 18.349 7.613 18.074 1 42.32 ? C3 MPG 201 A 1 HETATM 3 C C4 MPG . . . B 2 18.175 6.178 18.649 1 34.66 ? C4 MPG 201 A 1 HETATM 4 C C5 MPG . . . B 2 19.528 5.524 19.131 1 37.2 ? C5 MPG 201 A 1 HETATM 5 C C6 MPG . . . B 2 20.018 6.255 20.391 1 42.45 ? C6 MPG 201 A 1 HETATM 6 C C7 MPG . . . B 2 20.109 5.285 21.591 1 40.33 ? C7 MPG 201 A 1 HETATM 7 C C8 MPG . . . B 2 21.467 5.383 22.286 1 34.97 ? C8 MPG 201 A 1 HETATM 8 C C9 MPG . . . B 2 21.304 5.301 23.833 1 33.16 ? C9 MPG 201 A 1 HETATM 9 C C10 MPG . . . B 2 21.277 4.112 24.563 1 37.94 ? C10 MPG 201 A 1 HETATM 10 C C11 MPG . . . B 2 21.39 2.691 23.939 1 41.64 ? C11 MPG 201 A 1 HETATM 11 C C12 MPG . . . B 2 20.005 2.138 23.717 1 42.6 ? C12 MPG 201 A 1 HETATM 12 C C13 MPG . . . B 2 19.748 1.729 22.242 1 41.33 ? C13 MPG 201 A 1 HETATM 13 C C14 MPG . . . B 2 18.246 1.893 21.882 1 34.1 ? C14 MPG 201 A 1 HETATM 14 O O1 MPG . . . B 2 17.072 9.774 15.369 1 36.36 ? O1 MPG 201 A 1 HETATM 15 C C1 MPG . . . B 2 16.951 9.303 16.735 1 40.49 ? C1 MPG 201 A 1 HETATM 16 C CXD MPG . . . B 2 15.882 9.614 12.965 1 34.59 ? CXD MPG 201 A 1 HETATM 17 O O2 MPG . . . B 2 16.211 8.466 12.291 1 29.75 ? O2 MPG 201 A 1 HETATM 18 C C21 MPG . . . B 2 16.694 10.701 12.296 1 36.61 ? C21 MPG 201 A 1 HETATM 19 O O3 MPG . . . B 2 16.575 10.654 10.847 1 34.14 ? O3 MPG 201 A 1 HETATM 20 O O4 MPG . . . B 2 15.327 8.499 14.982 1 48.83 ? O4 MPG 201 A 1 HETATM 21 C CX3 MPG . . . B 2 16.068 9.302 14.477 1 38.61 ? CX3 MPG 201 A 1 HETATM 22 H H21C MPG . . . B 2 17.624 7.435 16.117 1 44.77 ? H21C MPG 201 A 1 HETATM 23 H H22C MPG . . . B 2 16.463 7.35 17.224 1 44.77 ? H22C MPG 201 A 1 HETATM 24 H H31C MPG . . . B 2 18.218 8.281 18.793 1 50.78 ? H31C MPG 201 A 1 HETATM 25 H H32C MPG . . . B 2 19.245 7.709 17.692 1 50.78 ? H32C MPG 201 A 1 HETATM 26 H H41C MPG . . . B 2 17.551 6.217 19.415 1 41.59 ? H41C MPG 201 A 1 HETATM 27 H H42C MPG . . . B 2 17.783 5.607 17.953 1 41.59 ? H42C MPG 201 A 1 HETATM 28 H H51C MPG . . . B 2 19.38 4.583 19.337 1 44.64 ? H51C MPG 201 A 1 HETATM 29 H H52C MPG . . . B 2 20.206 5.603 18.42 1 44.64 ? H52C MPG 201 A 1 HETATM 30 H H61C MPG . . . B 2 19.394 6.974 20.606 1 50.94 ? H61C MPG 201 A 1 HETATM 31 H H62C MPG . . . B 2 20.915 6.642 20.215 1 50.94 ? H62C MPG 201 A 1 HETATM 32 H H71C MPG . . . B 2 19.977 4.364 21.271 1 48.4 ? H71C MPG 201 A 1 HETATM 33 H H72C MPG . . . B 2 19.412 5.504 22.23 1 48.4 ? H72C MPG 201 A 1 HETATM 34 H H81C MPG . . . B 2 22.042 4.641 21.981 1 41.97 ? H81C MPG 201 A 1 HETATM 35 H H82C MPG . . . B 2 21.888 6.232 22.051 1 41.97 ? H82C MPG 201 A 1 HETATM 36 H H9 MPG . . . B 2 21.223 6.163 24.34 1 39.79 ? H9 MPG 201 A 1 HETATM 37 H H10 MPG . . . B 2 21.168 4.177 25.558 1 45.53 ? H10 MPG 201 A 1 HETATM 38 H H111 MPG . . . B 2 21.887 2.099 24.553 1 49.97 ? H111 MPG 201 A 1 HETATM 39 H H112 MPG . . . B 2 21.862 2.745 23.082 1 49.97 ? H112 MPG 201 A 1 HETATM 40 H H121 MPG . . . B 2 19.35 2.818 23.975 1 51.12 ? H121 MPG 201 A 1 HETATM 41 H H122 MPG . . . B 2 19.886 1.359 24.281 1 51.12 ? H122 MPG 201 A 1 HETATM 42 H H131 MPG . . . B 2 20.011 0.792 22.115 1 49.59 ? H131 MPG 201 A 1 HETATM 43 H H132 MPG . . . B 2 20.293 2.306 21.643 1 49.59 ? H132 MPG 201 A 1 HETATM 44 H H141 MPG . . . B 2 18.155 2.029 20.919 1 40.92 ? H141 MPG 201 A 1 HETATM 45 H H142 MPG . . . B 2 17.883 2.66 22.352 1 40.92 ? H142 MPG 201 A 1 HETATM 46 H HX31 MPG . . . B 2 17.552 9.846 17.303 1 48.58 ? HX31 MPG 201 A 1 HETATM 47 H HX32 MPG . . . B 2 16.012 9.459 17.035 1 48.58 ? HX32 MPG 201 A 1 HETATM 48 H HXD MPG . . . B 2 14.927 9.804 12.806 1 41.51 ? HXD MPG 201 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #