data_4RYR
#
_model_server_result.job_id            GPVCZqcjCo76eKRGv-Lv2w 
_model_server_result.datetime_utc      '2025-07-14 08:45:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ryr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    4RYR 
#
_exptl.entry_id    4RYR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RYR 
_cell.length_a            28.906 
_cell.length_b            54.658 
_cell.length_c            107.579 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RYR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                MPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 MPG sing 246 n n 
C2 C1 MPG sing 247 n n 
C3 C4 MPG sing 248 n n 
C4 C5 MPG sing 249 n n 
C5 C6 MPG sing 250 n n 
C6 C7 MPG sing 251 n n 
C7 C8 MPG sing 252 n n 
C8 C9 MPG sing 253 n n 
C9 C10 MPG doub 254 z n 
C10 C11 MPG sing 255 n n 
C11 C12 MPG sing 256 n n 
C12 C13 MPG sing 257 n n 
C13 C14 MPG sing 258 n n 
C14 C15 MPG sing 259 n n 
C15 C16 MPG sing 260 n n 
C16 C17 MPG sing 261 n n 
C17 C18 MPG sing 262 n n 
O1 C1 MPG sing 263 n n 
O1 CX3 MPG sing 264 n n 
CXD O2 MPG sing 265 n n 
CXD C21 MPG sing 266 n n 
CXD CX3 MPG sing 267 n n 
C21 O3 MPG sing 268 n n 
C2 H21C MPG sing 269 n n 
C2 H22C MPG sing 270 n n 
C3 H31C MPG sing 271 n n 
C3 H32C MPG sing 272 n n 
CX3 O4 MPG doub 273 n n 
C4 H41C MPG sing 274 n n 
C4 H42C MPG sing 275 n n 
C5 H51C MPG sing 276 n n 
C5 H52C MPG sing 277 n n 
C6 H61C MPG sing 278 n n 
C6 H62C MPG sing 279 n n 
C7 H71C MPG sing 280 n n 
C7 H72C MPG sing 281 n n 
C8 H81C MPG sing 282 n n 
C8 H82C MPG sing 283 n n 
C9 H9 MPG sing 284 n n 
C10 H10 MPG sing 285 n n 
C11 H111 MPG sing 286 n n 
C11 H112 MPG sing 287 n n 
C12 H121 MPG sing 288 n n 
C12 H122 MPG sing 289 n n 
C13 H131 MPG sing 290 n n 
C13 H132 MPG sing 291 n n 
C14 H141 MPG sing 292 n n 
C14 H142 MPG sing 293 n n 
C15 H151 MPG sing 294 n n 
C15 H152 MPG sing 295 n n 
C16 H161 MPG sing 296 n n 
C16 H162 MPG sing 297 n n 
C17 H171 MPG sing 298 n n 
C17 H172 MPG sing 299 n n 
C18 H181 MPG sing 300 n n 
C18 H182 MPG sing 301 n n 
C18 H183 MPG sing 302 n n 
C1 HX31 MPG sing 303 n n 
C1 HX32 MPG sing 304 n n 
CXD HXD MPG sing 305 n n 
O2 H2 MPG sing 306 n n 
C21 H211 MPG sing 307 n n 
C21 H212 MPG sing 308 n n 
O3 H3 MPG sing 309 n n 
#
_atom_sites.entry_id                     4RYR 
_atom_sites.fract_transf_matrix[1][1]    0.034595 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018296 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPG A 1 201 1 MPG MPG . 
C 2 MPG A 1 202 5 MPG MPG . 
D 2 MPG A 1 203 6 MPG MPG . 
E 2 MPG A 1 204 7 MPG MPG . 
F 2 MPG A 1 205 8 MPG MPG . 
G 2 MPG A 1 206 9 MPG MPG . 
H 2 MPG A 1 207 10 MPG MPG . 
I 2 MPG A 1 208 13 MPG MPG . 
J 2 MPG A 1 209 14 MPG MPG . 
K 3 DMS A 1 210 1 DMS DMS . 
L 3 DMS A 1 211 3 DMS DMS . 
M 3 DMS A 1 212 5 DMS DMS . 
N 3 DMS A 1 213 6 DMS DMS . 
O 4 HOH A 1 301 1 HOH HOH . 
O 4 HOH A 2 302 2 HOH HOH . 
O 4 HOH A 3 303 3 HOH HOH . 
O 4 HOH A 4 304 4 HOH HOH . 
O 4 HOH A 5 305 5 HOH HOH . 
O 4 HOH A 6 306 6 HOH HOH . 
O 4 HOH A 7 307 7 HOH HOH . 
O 4 HOH A 8 308 8 HOH HOH . 
O 4 HOH A 9 309 9 HOH HOH . 
O 4 HOH A 10 310 10 HOH HOH . 
O 4 HOH A 11 311 11 HOH HOH . 
O 4 HOH A 12 312 12 HOH HOH . 
O 4 HOH A 13 313 13 HOH HOH . 
O 4 HOH A 14 314 14 HOH HOH . 
O 4 HOH A 15 315 15 HOH HOH . 
O 4 HOH A 16 316 16 HOH HOH . 
O 4 HOH A 17 317 17 HOH HOH . 
O 4 HOH A 18 318 18 HOH HOH . 
O 4 HOH A 19 319 19 HOH HOH . 
O 4 HOH A 20 320 20 HOH HOH . 
O 4 HOH A 21 321 22 HOH HOH . 
O 4 HOH A 22 322 23 HOH HOH . 
O 4 HOH A 23 323 24 HOH HOH . 
O 4 HOH A 24 324 25 HOH HOH . 
O 4 HOH A 25 325 26 HOH HOH . 
O 4 HOH A 26 326 27 HOH HOH . 
O 4 HOH A 27 327 28 HOH HOH . 
O 4 HOH A 28 328 29 HOH HOH . 
O 4 HOH A 29 329 30 HOH HOH . 
O 4 HOH A 30 330 31 HOH HOH . 
O 4 HOH A 31 331 32 HOH HOH . 
O 4 HOH A 32 332 33 HOH HOH . 
O 4 HOH A 33 333 34 HOH HOH . 
O 4 HOH A 34 334 35 HOH HOH . 
O 4 HOH A 35 335 36 HOH HOH . 
O 4 HOH A 36 336 37 HOH HOH . 
O 4 HOH A 37 337 38 HOH HOH . 
O 4 HOH A 38 338 41 HOH HOH . 
O 4 HOH A 39 339 42 HOH HOH . 
O 4 HOH A 40 340 43 HOH HOH . 
O 4 HOH A 41 341 44 HOH HOH . 
O 4 HOH A 42 342 45 HOH HOH . 
O 4 HOH A 43 343 46 HOH HOH . 
O 4 HOH A 44 344 47 HOH HOH . 
O 4 HOH A 45 345 48 HOH HOH . 
O 4 HOH A 46 346 50 HOH HOH . 
O 4 HOH A 47 347 51 HOH HOH . 
O 4 HOH A 48 348 52 HOH HOH . 
O 4 HOH A 49 349 53 HOH HOH . 
O 4 HOH A 50 350 54 HOH HOH . 
O 4 HOH A 51 351 55 HOH HOH . 
O 4 HOH A 52 352 56 HOH HOH . 
O 4 HOH A 53 353 57 HOH HOH . 
O 4 HOH A 54 354 59 HOH HOH . 
O 4 HOH A 55 355 60 HOH HOH . 
O 4 HOH A 56 356 61 HOH HOH . 
O 4 HOH A 57 357 62 HOH HOH . 
O 4 HOH A 58 358 63 HOH HOH . 
O 4 HOH A 59 359 64 HOH HOH . 
O 4 HOH A 60 360 65 HOH HOH . 
O 4 HOH A 61 361 66 HOH HOH . 
O 4 HOH A 62 362 68 HOH HOH . 
O 4 HOH A 63 363 69 HOH HOH . 
O 4 HOH A 64 364 70 HOH HOH . 
O 4 HOH A 65 365 71 HOH HOH . 
O 4 HOH A 66 366 72 HOH HOH . 
O 4 HOH A 67 367 74 HOH HOH . 
O 4 HOH A 68 368 75 HOH HOH . 
O 4 HOH A 69 369 76 HOH HOH . 
O 4 HOH A 70 370 77 HOH HOH . 
O 4 HOH A 71 371 78 HOH HOH . 
O 4 HOH A 72 372 79 HOH HOH . 
O 4 HOH A 73 373 80 HOH HOH . 
O 4 HOH A 74 374 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 MPG . . . D 2 16.675 16.358 11.504 1 53.92 ? C2 MPG 203 A 1 
HETATM 2 C C3 MPG . . . D 2 16.901 16.047 13.013 1 51.76 ? C3 MPG 203 A 1 
HETATM 3 C C4 MPG . . . D 2 16.408 14.669 13.51 1 45.39 ? C4 MPG 203 A 1 
HETATM 4 C C5 MPG . . . D 2 16.528 14.714 15.083 1 39.88 ? C5 MPG 203 A 1 
HETATM 5 C C6 MPG . . . D 2 17.249 13.449 15.566 1 38.87 ? C6 MPG 203 A 1 
HETATM 6 C C7 MPG . . . D 2 16.948 13.293 17.082 1 46.69 ? C7 MPG 203 A 1 
HETATM 7 C C8 MPG . . . D 2 15.597 12.597 17.195 1 43.89 ? C8 MPG 203 A 1 
HETATM 8 C C9 MPG . . . D 2 14.962 12.962 18.557 1 33.36 ? C9 MPG 203 A 1 
HETATM 9 C C10 MPG . . . D 2 14.843 12.046 19.59 1 35.96 ? C10 MPG 203 A 1 
HETATM 10 C C11 MPG . . . D 2 15.345 10.595 19.462 1 35.52 ? C11 MPG 203 A 1 
HETATM 11 C C12 MPG . . . D 2 15.171 9.921 20.777 1 31.58 ? C12 MPG 203 A 1 
HETATM 12 C C13 MPG . . . D 2 14.767 8.483 20.558 1 32.39 ? C13 MPG 203 A 1 
HETATM 13 C C14 MPG . . . D 2 14.513 7.989 21.983 1 38.69 ? C14 MPG 203 A 1 
HETATM 14 C C15 MPG . . . D 2 14.632 6.491 21.996 1 36.93 ? C15 MPG 203 A 1 
HETATM 15 C C16 MPG . . . D 2 16.13 6.054 21.913 1 41.09 ? C16 MPG 203 A 1 
HETATM 16 C C17 MPG . . . D 2 16.118 4.635 21.317 1 43.27 ? C17 MPG 203 A 1 
HETATM 17 C C18 MPG . . . D 2 15.429 3.705 22.32 1 45.52 ? C18 MPG 203 A 1 
HETATM 18 O O1 MPG . . . D 2 15.707 15.113 9.666 1 48.82 ? O1 MPG 203 A 1 
HETATM 19 C C1 MPG . . . D 2 15.395 15.781 10.901 1 46.74 ? C1 MPG 203 A 1 
HETATM 20 C CXD MPG . . . D 2 15.73 16.88 7.751 1 46.22 ? CXD MPG 203 A 1 
HETATM 21 O O2 MPG . . . D 2 16.709 17.744 7.267 1 64.22 ? O2 MPG 203 A 1 
HETATM 22 C C21 MPG . . . D 2 14.645 17.677 8.436 1 46.98 ? C21 MPG 203 A 1 
HETATM 23 O O3 MPG . . . D 2 14.045 18.522 7.446 1 52.19 ? O3 MPG 203 A 1 
HETATM 24 O O4 MPG . . . D 2 17.564 15.615 8.445 1 44.27 ? O4 MPG 203 A 1 
HETATM 25 C CX3 MPG . . . D 2 16.4 15.849 8.643 1 42.16 ? CX3 MPG 203 A 1 
HETATM 26 H H21C MPG . . . D 2 17.448 15.996 10.993 1 64.71 ? H21C MPG 203 A 1 
HETATM 27 H H22C MPG . . . D 2 16.657 17.331 11.39 1 64.71 ? H22C MPG 203 A 1 
HETATM 28 H H31C MPG . . . D 2 16.442 16.747 13.542 1 62.11 ? H31C MPG 203 A 1 
HETATM 29 H H32C MPG . . . D 2 17.861 16.107 13.195 1 62.11 ? H32C MPG 203 A 1 
HETATM 30 H H41C MPG . . . D 2 16.977 13.948 13.144 1 54.47 ? H41C MPG 203 A 1 
HETATM 31 H H42C MPG . . . D 2 15.472 14.529 13.247 1 54.47 ? H42C MPG 203 A 1 
HETATM 32 H H51C MPG . . . D 2 15.637 14.753 15.477 1 47.86 ? H51C MPG 203 A 1 
HETATM 33 H H52C MPG . . . D 2 17.043 15.511 15.353 1 47.86 ? H52C MPG 203 A 1 
HETATM 34 H H61C MPG . . . D 2 16.915 12.672 15.079 1 46.64 ? H61C MPG 203 A 1 
HETATM 35 H H62C MPG . . . D 2 18.227 13.543 15.424 1 46.64 ? H62C MPG 203 A 1 
HETATM 36 H H71C MPG . . . D 2 16.907 14.178 17.51 1 56.02 ? H71C MPG 203 A 1 
HETATM 37 H H72C MPG . . . D 2 17.635 12.751 17.503 1 56.02 ? H72C MPG 203 A 1 
HETATM 38 H H81C MPG . . . D 2 15.722 11.62 17.139 1 52.67 ? H81C MPG 203 A 1 
HETATM 39 H H82C MPG . . . D 2 15.013 12.894 16.47 1 52.67 ? H82C MPG 203 A 1 
HETATM 40 H H9 MPG . . . D 2 14.618 13.895 18.696 1 40.04 ? H9 MPG 203 A 1 
HETATM 41 H H10 MPG . . . D 2 14.423 12.34 20.452 1 43.16 ? H10 MPG 203 A 1 
HETATM 42 H H111 MPG . . . D 2 16.3 10.594 19.213 1 42.63 ? H111 MPG 203 A 1 
HETATM 43 H H112 MPG . . . D 2 14.825 10.123 18.778 1 42.63 ? H112 MPG 203 A 1 
HETATM 44 H H121 MPG . . . D 2 14.475 10.381 21.289 1 37.89 ? H121 MPG 203 A 1 
HETATM 45 H H122 MPG . . . D 2 16.006 9.95 21.268 1 37.89 ? H122 MPG 203 A 1 
HETATM 46 H H131 MPG . . . D 2 13.948 8.429 20.019 1 38.87 ? H131 MPG 203 A 1 
HETATM 47 H H132 MPG . . . D 2 15.506 7.97 20.133 1 38.87 ? H132 MPG 203 A 1 
HETATM 48 H H141 MPG . . . D 2 13.615 8.25 22.266 1 46.42 ? H141 MPG 203 A 1 
HETATM 49 H H142 MPG . . . D 2 15.17 8.374 22.584 1 46.42 ? H142 MPG 203 A 1 
HETATM 50 H H151 MPG . . . D 2 14.148 6.124 21.235 1 44.31 ? H151 MPG 203 A 1 
HETATM 51 H H152 MPG . . . D 2 14.244 6.146 22.819 1 44.31 ? H152 MPG 203 A 1 
HETATM 52 H H161 MPG . . . D 2 16.625 6.66 21.33 1 49.31 ? H161 MPG 203 A 1 
HETATM 53 H H162 MPG . . . D 2 16.531 6.042 22.812 1 49.31 ? H162 MPG 203 A 1 
HETATM 54 H H171 MPG . . . D 2 17.035 4.333 21.163 1 51.92 ? H171 MPG 203 A 1 
HETATM 55 H H172 MPG . . . D 2 15.623 4.636 20.473 1 51.92 ? H172 MPG 203 A 1 
HETATM 56 H H181 MPG . . . D 2 15.329 2.813 21.923 1 54.62 ? H181 MPG 203 A 1 
HETATM 57 H H182 MPG . . . D 2 14.532 4.069 22.546 1 54.62 ? H182 MPG 203 A 1 
HETATM 58 H H183 MPG . . . D 2 15.968 3.642 23.131 1 54.62 ? H183 MPG 203 A 1 
HETATM 59 H HX31 MPG . . . D 2 14.993 15.136 11.534 1 56.09 ? HX31 MPG 203 A 1 
HETATM 60 H HX32 MPG . . . D 2 14.75 16.521 10.725 1 56.09 ? HX32 MPG 203 A 1 
HETATM 61 H HXD MPG . . . D 2 15.327 16.409 6.983 1 55.47 ? HXD MPG 203 A 1 
HETATM 62 H H2 MPG . . . D 2 16.935 17.5 6.41 1 77.07 ? H2 MPG 203 A 1 
HETATM 63 H H211 MPG . . . D 2 15.035 18.225 9.152 1 56.37 ? H211 MPG 203 A 1 
HETATM 64 H H212 MPG . . . D 2 13.973 17.073 8.809 1 56.37 ? H212 MPG 203 A 1 
HETATM 65 H H3 MPG . . . D 2 13.902 19.347 7.797 1 62.63 ? H3 MPG 203 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           398 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           65 
#