data_4RYR # _model_server_result.job_id gJlXo8ij3gtzU1qd0K2SvQ _model_server_result.datetime_utc '2024-11-05 08:30:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ryr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 4RYR # _exptl.entry_id 4RYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RYR _cell.length_a 28.906 _cell.length_b 54.658 _cell.length_c 107.579 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 246 n n C2 C1 MPG sing 247 n n C3 C4 MPG sing 248 n n C4 C5 MPG sing 249 n n C5 C6 MPG sing 250 n n C6 C7 MPG sing 251 n n C7 C8 MPG sing 252 n n C8 C9 MPG sing 253 n n C9 C10 MPG doub 254 z n C10 C11 MPG sing 255 n n C11 C12 MPG sing 256 n n C12 C13 MPG sing 257 n n C13 C14 MPG sing 258 n n C14 C15 MPG sing 259 n n C15 C16 MPG sing 260 n n C16 C17 MPG sing 261 n n C17 C18 MPG sing 262 n n O1 C1 MPG sing 263 n n O1 CX3 MPG sing 264 n n CXD O2 MPG sing 265 n n CXD C21 MPG sing 266 n n CXD CX3 MPG sing 267 n n C21 O3 MPG sing 268 n n C2 H21C MPG sing 269 n n C2 H22C MPG sing 270 n n C3 H31C MPG sing 271 n n C3 H32C MPG sing 272 n n CX3 O4 MPG doub 273 n n C4 H41C MPG sing 274 n n C4 H42C MPG sing 275 n n C5 H51C MPG sing 276 n n C5 H52C MPG sing 277 n n C6 H61C MPG sing 278 n n C6 H62C MPG sing 279 n n C7 H71C MPG sing 280 n n C7 H72C MPG sing 281 n n C8 H81C MPG sing 282 n n C8 H82C MPG sing 283 n n C9 H9 MPG sing 284 n n C10 H10 MPG sing 285 n n C11 H111 MPG sing 286 n n C11 H112 MPG sing 287 n n C12 H121 MPG sing 288 n n C12 H122 MPG sing 289 n n C13 H131 MPG sing 290 n n C13 H132 MPG sing 291 n n C14 H141 MPG sing 292 n n C14 H142 MPG sing 293 n n C15 H151 MPG sing 294 n n C15 H152 MPG sing 295 n n C16 H161 MPG sing 296 n n C16 H162 MPG sing 297 n n C17 H171 MPG sing 298 n n C17 H172 MPG sing 299 n n C18 H181 MPG sing 300 n n C18 H182 MPG sing 301 n n C18 H183 MPG sing 302 n n C1 HX31 MPG sing 303 n n C1 HX32 MPG sing 304 n n CXD HXD MPG sing 305 n n O2 H2 MPG sing 306 n n C21 H211 MPG sing 307 n n C21 H212 MPG sing 308 n n O3 H3 MPG sing 309 n n # _atom_sites.entry_id 4RYR _atom_sites.fract_transf_matrix[1][1] 0.034595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPG A 1 201 1 MPG MPG . C 2 MPG A 1 202 5 MPG MPG . D 2 MPG A 1 203 6 MPG MPG . E 2 MPG A 1 204 7 MPG MPG . F 2 MPG A 1 205 8 MPG MPG . G 2 MPG A 1 206 9 MPG MPG . H 2 MPG A 1 207 10 MPG MPG . I 2 MPG A 1 208 13 MPG MPG . J 2 MPG A 1 209 14 MPG MPG . K 3 DMS A 1 210 1 DMS DMS . L 3 DMS A 1 211 3 DMS DMS . M 3 DMS A 1 212 5 DMS DMS . N 3 DMS A 1 213 6 DMS DMS . O 4 HOH A 1 301 1 HOH HOH . O 4 HOH A 2 302 2 HOH HOH . O 4 HOH A 3 303 3 HOH HOH . O 4 HOH A 4 304 4 HOH HOH . O 4 HOH A 5 305 5 HOH HOH . O 4 HOH A 6 306 6 HOH HOH . O 4 HOH A 7 307 7 HOH HOH . O 4 HOH A 8 308 8 HOH HOH . O 4 HOH A 9 309 9 HOH HOH . O 4 HOH A 10 310 10 HOH HOH . O 4 HOH A 11 311 11 HOH HOH . O 4 HOH A 12 312 12 HOH HOH . O 4 HOH A 13 313 13 HOH HOH . O 4 HOH A 14 314 14 HOH HOH . O 4 HOH A 15 315 15 HOH HOH . O 4 HOH A 16 316 16 HOH HOH . O 4 HOH A 17 317 17 HOH HOH . O 4 HOH A 18 318 18 HOH HOH . O 4 HOH A 19 319 19 HOH HOH . O 4 HOH A 20 320 20 HOH HOH . O 4 HOH A 21 321 22 HOH HOH . O 4 HOH A 22 322 23 HOH HOH . O 4 HOH A 23 323 24 HOH HOH . O 4 HOH A 24 324 25 HOH HOH . O 4 HOH A 25 325 26 HOH HOH . O 4 HOH A 26 326 27 HOH HOH . O 4 HOH A 27 327 28 HOH HOH . O 4 HOH A 28 328 29 HOH HOH . O 4 HOH A 29 329 30 HOH HOH . O 4 HOH A 30 330 31 HOH HOH . O 4 HOH A 31 331 32 HOH HOH . O 4 HOH A 32 332 33 HOH HOH . O 4 HOH A 33 333 34 HOH HOH . O 4 HOH A 34 334 35 HOH HOH . O 4 HOH A 35 335 36 HOH HOH . O 4 HOH A 36 336 37 HOH HOH . O 4 HOH A 37 337 38 HOH HOH . O 4 HOH A 38 338 41 HOH HOH . O 4 HOH A 39 339 42 HOH HOH . O 4 HOH A 40 340 43 HOH HOH . O 4 HOH A 41 341 44 HOH HOH . O 4 HOH A 42 342 45 HOH HOH . O 4 HOH A 43 343 46 HOH HOH . O 4 HOH A 44 344 47 HOH HOH . O 4 HOH A 45 345 48 HOH HOH . O 4 HOH A 46 346 50 HOH HOH . O 4 HOH A 47 347 51 HOH HOH . O 4 HOH A 48 348 52 HOH HOH . O 4 HOH A 49 349 53 HOH HOH . O 4 HOH A 50 350 54 HOH HOH . O 4 HOH A 51 351 55 HOH HOH . O 4 HOH A 52 352 56 HOH HOH . O 4 HOH A 53 353 57 HOH HOH . O 4 HOH A 54 354 59 HOH HOH . O 4 HOH A 55 355 60 HOH HOH . O 4 HOH A 56 356 61 HOH HOH . O 4 HOH A 57 357 62 HOH HOH . O 4 HOH A 58 358 63 HOH HOH . O 4 HOH A 59 359 64 HOH HOH . O 4 HOH A 60 360 65 HOH HOH . O 4 HOH A 61 361 66 HOH HOH . O 4 HOH A 62 362 68 HOH HOH . O 4 HOH A 63 363 69 HOH HOH . O 4 HOH A 64 364 70 HOH HOH . O 4 HOH A 65 365 71 HOH HOH . O 4 HOH A 66 366 72 HOH HOH . O 4 HOH A 67 367 74 HOH HOH . O 4 HOH A 68 368 75 HOH HOH . O 4 HOH A 69 369 76 HOH HOH . O 4 HOH A 70 370 77 HOH HOH . O 4 HOH A 71 371 78 HOH HOH . O 4 HOH A 72 372 79 HOH HOH . O 4 HOH A 73 373 80 HOH HOH . O 4 HOH A 74 374 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . E 2 9.25 -6.045 23.066 1 52.28 ? C2 MPG 204 A 1 HETATM 2 C C3 MPG . . . E 2 8.165 -5.804 21.989 1 49.19 ? C3 MPG 204 A 1 HETATM 3 C C4 MPG . . . E 2 8.676 -6.292 20.612 1 52.18 ? C4 MPG 204 A 1 HETATM 4 C C5 MPG . . . E 2 9.17 -5.077 19.726 1 51.79 ? C5 MPG 204 A 1 HETATM 5 C C6 MPG . . . E 2 8.187 -4.95 18.543 1 50.29 ? C6 MPG 204 A 1 HETATM 6 C C7 MPG . . . E 2 8.717 -3.92 17.499 1 44.34 ? C7 MPG 204 A 1 HETATM 7 C C8 MPG . . . E 2 9.954 -4.473 16.79 1 43.68 ? C8 MPG 204 A 1 HETATM 8 C C9 MPG . . . E 2 9.857 -4.191 15.262 1 49.49 ? C9 MPG 204 A 1 HETATM 9 O O1 MPG . . . E 2 7.819 -7.101 24.702 1 54.59 ? O1 MPG 204 A 1 HETATM 10 C C1 MPG . . . E 2 8.619 -5.931 24.449 1 50.3 ? C1 MPG 204 A 1 HETATM 11 C CXD MPG . . . E 2 9.441 -8.688 25.927 1 57.65 ? CXD MPG 204 A 1 HETATM 12 O O2 MPG . . . E 2 9.568 -9.421 24.755 1 65.99 ? O2 MPG 204 A 1 HETATM 13 C C21 MPG . . . E 2 9.425 -9.639 27.107 1 56.38 ? C21 MPG 204 A 1 HETATM 14 O O3 MPG . . . E 2 10.566 -9.444 27.946 1 55.39 ? O3 MPG 204 A 1 HETATM 15 O O4 MPG . . . E 2 7.409 -7.86 26.816 1 65.32 ? O4 MPG 204 A 1 HETATM 16 C CX3 MPG . . . E 2 8.158 -7.862 25.867 1 58.32 ? CX3 MPG 204 A 1 HETATM 17 H H21C MPG . . . E 2 9.968 -5.362 22.972 1 62.74 ? H21C MPG 204 A 1 HETATM 18 H H22C MPG . . . E 2 9.633 -6.94 22.952 1 62.74 ? H22C MPG 204 A 1 HETATM 19 H H31C MPG . . . E 2 7.345 -6.303 22.233 1 59.03 ? H31C MPG 204 A 1 HETATM 20 H H32C MPG . . . E 2 7.961 -4.848 21.939 1 59.03 ? H32C MPG 204 A 1 HETATM 21 H H41C MPG . . . E 2 9.426 -6.923 20.748 1 62.61 ? H41C MPG 204 A 1 HETATM 22 H H42C MPG . . . E 2 7.947 -6.755 20.144 1 62.61 ? H42C MPG 204 A 1 HETATM 23 H H51C MPG . . . E 2 10.07 -5.253 19.394 1 62.15 ? H51C MPG 204 A 1 HETATM 24 H H52C MPG . . . E 2 9.165 -4.247 20.258 1 62.15 ? H52C MPG 204 A 1 HETATM 25 H H61C MPG . . . E 2 8.088 -5.821 18.114 1 60.35 ? H61C MPG 204 A 1 HETATM 26 H H62C MPG . . . E 2 7.304 -4.648 18.882 1 60.35 ? H62C MPG 204 A 1 HETATM 27 H H71C MPG . . . E 2 8.953 -3.083 17.959 1 53.2 ? H71C MPG 204 A 1 HETATM 28 H H72C MPG . . . E 2 8.024 -3.742 16.842 1 53.2 ? H72C MPG 204 A 1 HETATM 29 H H81C MPG . . . E 2 10.761 -4.039 17.152 1 52.42 ? H81C MPG 204 A 1 HETATM 30 H H82C MPG . . . E 2 10.01 -5.437 16.939 1 52.42 ? H82C MPG 204 A 1 HETATM 31 H H9 MPG . . . E 2 9.424 -3.346 14.934 1 59.39 ? H9 MPG 204 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #