data_4RYR # _model_server_result.job_id 8sGrdyT32luA9E8i0IFqqg _model_server_result.datetime_utc '2024-11-05 08:41:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ryr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":213}' # _entry.id 4RYR # _exptl.entry_id 4RYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RYR _cell.length_a 28.906 _cell.length_b 54.658 _cell.length_c 107.579 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 4RYR _atom_sites.fract_transf_matrix[1][1] 0.034595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPG A 1 201 1 MPG MPG . C 2 MPG A 1 202 5 MPG MPG . D 2 MPG A 1 203 6 MPG MPG . E 2 MPG A 1 204 7 MPG MPG . F 2 MPG A 1 205 8 MPG MPG . G 2 MPG A 1 206 9 MPG MPG . H 2 MPG A 1 207 10 MPG MPG . I 2 MPG A 1 208 13 MPG MPG . J 2 MPG A 1 209 14 MPG MPG . K 3 DMS A 1 210 1 DMS DMS . L 3 DMS A 1 211 3 DMS DMS . M 3 DMS A 1 212 5 DMS DMS . N 3 DMS A 1 213 6 DMS DMS . O 4 HOH A 1 301 1 HOH HOH . O 4 HOH A 2 302 2 HOH HOH . O 4 HOH A 3 303 3 HOH HOH . O 4 HOH A 4 304 4 HOH HOH . O 4 HOH A 5 305 5 HOH HOH . O 4 HOH A 6 306 6 HOH HOH . O 4 HOH A 7 307 7 HOH HOH . O 4 HOH A 8 308 8 HOH HOH . O 4 HOH A 9 309 9 HOH HOH . O 4 HOH A 10 310 10 HOH HOH . O 4 HOH A 11 311 11 HOH HOH . O 4 HOH A 12 312 12 HOH HOH . O 4 HOH A 13 313 13 HOH HOH . O 4 HOH A 14 314 14 HOH HOH . O 4 HOH A 15 315 15 HOH HOH . O 4 HOH A 16 316 16 HOH HOH . O 4 HOH A 17 317 17 HOH HOH . O 4 HOH A 18 318 18 HOH HOH . O 4 HOH A 19 319 19 HOH HOH . O 4 HOH A 20 320 20 HOH HOH . O 4 HOH A 21 321 22 HOH HOH . O 4 HOH A 22 322 23 HOH HOH . O 4 HOH A 23 323 24 HOH HOH . O 4 HOH A 24 324 25 HOH HOH . O 4 HOH A 25 325 26 HOH HOH . O 4 HOH A 26 326 27 HOH HOH . O 4 HOH A 27 327 28 HOH HOH . O 4 HOH A 28 328 29 HOH HOH . O 4 HOH A 29 329 30 HOH HOH . O 4 HOH A 30 330 31 HOH HOH . O 4 HOH A 31 331 32 HOH HOH . O 4 HOH A 32 332 33 HOH HOH . O 4 HOH A 33 333 34 HOH HOH . O 4 HOH A 34 334 35 HOH HOH . O 4 HOH A 35 335 36 HOH HOH . O 4 HOH A 36 336 37 HOH HOH . O 4 HOH A 37 337 38 HOH HOH . O 4 HOH A 38 338 41 HOH HOH . O 4 HOH A 39 339 42 HOH HOH . O 4 HOH A 40 340 43 HOH HOH . O 4 HOH A 41 341 44 HOH HOH . O 4 HOH A 42 342 45 HOH HOH . O 4 HOH A 43 343 46 HOH HOH . O 4 HOH A 44 344 47 HOH HOH . O 4 HOH A 45 345 48 HOH HOH . O 4 HOH A 46 346 50 HOH HOH . O 4 HOH A 47 347 51 HOH HOH . O 4 HOH A 48 348 52 HOH HOH . O 4 HOH A 49 349 53 HOH HOH . O 4 HOH A 50 350 54 HOH HOH . O 4 HOH A 51 351 55 HOH HOH . O 4 HOH A 52 352 56 HOH HOH . O 4 HOH A 53 353 57 HOH HOH . O 4 HOH A 54 354 59 HOH HOH . O 4 HOH A 55 355 60 HOH HOH . O 4 HOH A 56 356 61 HOH HOH . O 4 HOH A 57 357 62 HOH HOH . O 4 HOH A 58 358 63 HOH HOH . O 4 HOH A 59 359 64 HOH HOH . O 4 HOH A 60 360 65 HOH HOH . O 4 HOH A 61 361 66 HOH HOH . O 4 HOH A 62 362 68 HOH HOH . O 4 HOH A 63 363 69 HOH HOH . O 4 HOH A 64 364 70 HOH HOH . O 4 HOH A 65 365 71 HOH HOH . O 4 HOH A 66 366 72 HOH HOH . O 4 HOH A 67 367 74 HOH HOH . O 4 HOH A 68 368 75 HOH HOH . O 4 HOH A 69 369 76 HOH HOH . O 4 HOH A 70 370 77 HOH HOH . O 4 HOH A 71 371 78 HOH HOH . O 4 HOH A 72 372 79 HOH HOH . O 4 HOH A 73 373 80 HOH HOH . O 4 HOH A 74 374 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . N 3 -9.459 9.6 5.089 1 44.9 ? S DMS 213 A 1 HETATM 2 O O DMS . . . N 3 -10.053 9.89 6.44 1 31.36 ? O DMS 213 A 1 HETATM 3 C C1 DMS . . . N 3 -9.88 7.979 4.359 1 39.55 ? C1 DMS 213 A 1 HETATM 4 C C2 DMS . . . N 3 -9.491 10.941 3.858 1 36.87 ? C2 DMS 213 A 1 HETATM 5 H H11 DMS . . . N 3 -10.932 7.872 4.321 1 47.46 ? H11 DMS 213 A 1 HETATM 6 H H12 DMS . . . N 3 -9.483 7.919 3.379 1 47.46 ? H12 DMS 213 A 1 HETATM 7 H H13 DMS . . . N 3 -9.468 7.206 4.955 1 47.46 ? H13 DMS 213 A 1 HETATM 8 H H21 DMS . . . N 3 -10.485 11.284 3.734 1 44.24 ? H21 DMS 213 A 1 HETATM 9 H H22 DMS . . . N 3 -9.125 10.58 2.932 1 44.24 ? H22 DMS 213 A 1 HETATM 10 H H23 DMS . . . N 3 -8.881 11.74 4.19 1 44.24 ? H23 DMS 213 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #