data_4RYV # _model_server_result.job_id -ufUVLvmZBsPCCGqlwU41g _model_server_result.datetime_utc '2024-11-24 05:55:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ryv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4RYV # _exptl.entry_id 4RYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.243 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 126.68 _cell.angle_gamma 90 _cell.entry_id 4RYV _cell.length_a 70.97 _cell.length_b 63.91 _cell.length_c 47.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H13 N5 O' _chem_comp.formula_weight 219.243 _chem_comp.id ZEA _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TRANS-ZEATIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C14 ZEA sing 320 n n O16 H16 ZEA sing 321 n n C14 C13 ZEA sing 322 n n C14 H141 ZEA sing 323 n n C14 H142 ZEA sing 324 n n C13 C15 ZEA sing 325 n n C13 C12 ZEA doub 326 e n C15 H151 ZEA sing 327 n n C15 H152 ZEA sing 328 n n C15 H153 ZEA sing 329 n n C12 C11 ZEA sing 330 n n C12 H12 ZEA sing 331 n n C11 N10 ZEA sing 332 n n C11 H111 ZEA sing 333 n n C11 H112 ZEA sing 334 n n N10 C6 ZEA sing 335 n n N10 H10 ZEA sing 336 n n C6 C5 ZEA doub 337 n y C6 N1 ZEA sing 338 n y C5 N9 ZEA sing 339 n y C5 C4 ZEA sing 340 n y N9 C8 ZEA doub 341 n y C4 N7 ZEA sing 342 n y C4 N3 ZEA doub 343 n y N7 C8 ZEA sing 344 n y N7 H7 ZEA sing 345 n n C8 H8 ZEA sing 346 n n N3 C2 ZEA sing 347 n y C2 N1 ZEA doub 348 n y C2 H2 ZEA sing 349 n n # _atom_sites.entry_id 4RYV _atom_sites.fract_transf_matrix[1][1] 0.01409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010495 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZEA A 1 201 201 ZEA ZEA . C 2 ZEA A 1 202 202 ZEA ZEA . D 2 ZEA A 1 203 203 ZEA ZEA . E 2 ZEA A 1 204 204 ZEA ZEA . F 2 ZEA A 1 205 205 ZEA ZEA . G 3 SO4 A 1 206 206 SO4 SO4 . H 4 HOH A 1 301 301 HOH HOH . H 4 HOH A 2 302 302 HOH HOH . H 4 HOH A 3 303 303 HOH HOH . H 4 HOH A 4 304 304 HOH HOH . H 4 HOH A 5 305 305 HOH HOH . H 4 HOH A 6 306 306 HOH HOH . H 4 HOH A 7 307 307 HOH HOH . H 4 HOH A 8 308 308 HOH HOH . H 4 HOH A 9 309 309 HOH HOH . H 4 HOH A 10 310 310 HOH HOH . H 4 HOH A 11 311 311 HOH HOH . H 4 HOH A 12 312 312 HOH HOH . H 4 HOH A 13 313 313 HOH HOH . H 4 HOH A 14 314 314 HOH HOH . H 4 HOH A 15 315 315 HOH HOH . H 4 HOH A 16 316 316 HOH HOH . H 4 HOH A 17 317 317 HOH HOH . H 4 HOH A 18 318 318 HOH HOH . H 4 HOH A 19 319 319 HOH HOH . H 4 HOH A 20 320 320 HOH HOH . H 4 HOH A 21 321 321 HOH HOH . H 4 HOH A 22 322 322 HOH HOH . H 4 HOH A 23 323 323 HOH HOH . H 4 HOH A 24 324 324 HOH HOH . H 4 HOH A 25 325 325 HOH HOH . H 4 HOH A 26 326 326 HOH HOH . H 4 HOH A 27 327 327 HOH HOH . H 4 HOH A 28 328 328 HOH HOH . H 4 HOH A 29 329 329 HOH HOH . H 4 HOH A 30 330 330 HOH HOH . H 4 HOH A 31 331 331 HOH HOH . H 4 HOH A 32 332 332 HOH HOH . H 4 HOH A 33 333 333 HOH HOH . H 4 HOH A 34 334 334 HOH HOH . H 4 HOH A 35 335 335 HOH HOH . H 4 HOH A 36 336 336 HOH HOH . H 4 HOH A 37 337 337 HOH HOH . H 4 HOH A 38 338 338 HOH HOH . H 4 HOH A 39 339 339 HOH HOH . H 4 HOH A 40 340 340 HOH HOH . H 4 HOH A 41 341 341 HOH HOH . H 4 HOH A 42 342 342 HOH HOH . H 4 HOH A 43 343 343 HOH HOH . H 4 HOH A 44 344 344 HOH HOH . H 4 HOH A 45 345 345 HOH HOH . H 4 HOH A 46 346 346 HOH HOH . H 4 HOH A 47 347 347 HOH HOH . H 4 HOH A 48 348 348 HOH HOH . H 4 HOH A 49 349 349 HOH HOH . H 4 HOH A 50 350 350 HOH HOH . H 4 HOH A 51 351 351 HOH HOH . H 4 HOH A 52 352 352 HOH HOH . H 4 HOH A 53 353 353 HOH HOH . H 4 HOH A 54 354 354 HOH HOH . H 4 HOH A 55 355 355 HOH HOH . H 4 HOH A 56 356 356 HOH HOH . H 4 HOH A 57 357 357 HOH HOH . H 4 HOH A 58 358 358 HOH HOH . H 4 HOH A 59 359 359 HOH HOH . H 4 HOH A 60 360 360 HOH HOH . H 4 HOH A 61 361 361 HOH HOH . H 4 HOH A 62 362 362 HOH HOH . H 4 HOH A 63 363 363 HOH HOH . H 4 HOH A 64 364 364 HOH HOH . H 4 HOH A 65 365 365 HOH HOH . H 4 HOH A 66 366 366 HOH HOH . H 4 HOH A 67 367 367 HOH HOH . H 4 HOH A 68 368 368 HOH HOH . H 4 HOH A 69 369 369 HOH HOH . H 4 HOH A 70 370 370 HOH HOH . H 4 HOH A 71 371 371 HOH HOH . H 4 HOH A 72 372 372 HOH HOH . H 4 HOH A 73 373 373 HOH HOH . H 4 HOH A 74 374 374 HOH HOH . H 4 HOH A 75 375 375 HOH HOH . H 4 HOH A 76 376 376 HOH HOH . H 4 HOH A 77 377 377 HOH HOH . H 4 HOH A 78 378 378 HOH HOH . H 4 HOH A 79 379 379 HOH HOH . H 4 HOH A 80 380 380 HOH HOH . H 4 HOH A 81 381 381 HOH HOH . H 4 HOH A 82 382 382 HOH HOH . H 4 HOH A 83 383 383 HOH HOH . H 4 HOH A 84 384 384 HOH HOH . H 4 HOH A 85 385 385 HOH HOH . H 4 HOH A 86 386 386 HOH HOH . H 4 HOH A 87 387 387 HOH HOH . H 4 HOH A 88 388 388 HOH HOH . H 4 HOH A 89 389 389 HOH HOH . H 4 HOH A 90 390 390 HOH HOH . H 4 HOH A 91 391 391 HOH HOH . H 4 HOH A 92 392 392 HOH HOH . H 4 HOH A 93 393 393 HOH HOH . H 4 HOH A 94 394 394 HOH HOH . H 4 HOH A 95 395 395 HOH HOH . H 4 HOH A 96 396 396 HOH HOH . H 4 HOH A 97 397 397 HOH HOH . H 4 HOH A 98 398 398 HOH HOH . H 4 HOH A 99 399 399 HOH HOH . H 4 HOH A 100 400 400 HOH HOH . H 4 HOH A 101 401 401 HOH HOH . H 4 HOH A 102 402 402 HOH HOH . H 4 HOH A 103 403 403 HOH HOH . H 4 HOH A 104 404 404 HOH HOH . H 4 HOH A 105 405 405 HOH HOH . H 4 HOH A 106 406 406 HOH HOH . H 4 HOH A 107 407 407 HOH HOH . H 4 HOH A 108 408 408 HOH HOH . H 4 HOH A 109 409 409 HOH HOH . H 4 HOH A 110 410 410 HOH HOH . H 4 HOH A 111 411 411 HOH HOH . H 4 HOH A 112 412 412 HOH HOH . H 4 HOH A 113 413 413 HOH HOH . H 4 HOH A 114 414 414 HOH HOH . H 4 HOH A 115 415 415 HOH HOH . H 4 HOH A 116 416 416 HOH HOH . H 4 HOH A 117 417 417 HOH HOH . H 4 HOH A 118 418 418 HOH HOH . H 4 HOH A 119 419 419 HOH HOH . H 4 HOH A 120 420 420 HOH HOH . H 4 HOH A 121 421 421 HOH HOH . H 4 HOH A 122 422 422 HOH HOH . H 4 HOH A 123 423 423 HOH HOH . H 4 HOH A 124 424 424 HOH HOH . H 4 HOH A 125 425 425 HOH HOH . H 4 HOH A 126 426 426 HOH HOH . H 4 HOH A 127 427 427 HOH HOH . H 4 HOH A 128 428 428 HOH HOH . H 4 HOH A 129 429 429 HOH HOH . H 4 HOH A 130 430 430 HOH HOH . H 4 HOH A 131 431 431 HOH HOH . H 4 HOH A 132 432 432 HOH HOH . H 4 HOH A 133 433 433 HOH HOH . H 4 HOH A 134 434 434 HOH HOH . H 4 HOH A 135 435 435 HOH HOH . H 4 HOH A 136 436 436 HOH HOH . H 4 HOH A 137 437 437 HOH HOH . H 4 HOH A 138 438 438 HOH HOH . H 4 HOH A 139 439 439 HOH HOH . H 4 HOH A 140 440 440 HOH HOH . H 4 HOH A 141 441 441 HOH HOH . H 4 HOH A 142 442 442 HOH HOH . H 4 HOH A 143 443 443 HOH HOH . H 4 HOH A 144 444 444 HOH HOH . H 4 HOH A 145 445 445 HOH HOH . H 4 HOH A 146 446 446 HOH HOH . H 4 HOH A 147 447 447 HOH HOH . H 4 HOH A 148 448 448 HOH HOH . H 4 HOH A 149 449 449 HOH HOH . H 4 HOH A 150 450 450 HOH HOH . H 4 HOH A 151 451 451 HOH HOH . H 4 HOH A 152 452 452 HOH HOH . H 4 HOH A 153 453 453 HOH HOH . H 4 HOH A 154 454 454 HOH HOH . H 4 HOH A 155 455 455 HOH HOH . H 4 HOH A 156 456 456 HOH HOH . H 4 HOH A 157 457 457 HOH HOH . H 4 HOH A 158 458 458 HOH HOH . H 4 HOH A 159 459 459 HOH HOH . H 4 HOH A 160 460 460 HOH HOH . H 4 HOH A 161 461 461 HOH HOH . H 4 HOH A 162 462 462 HOH HOH . H 4 HOH A 163 463 463 HOH HOH . H 4 HOH A 164 464 464 HOH HOH . H 4 HOH A 165 465 465 HOH HOH . H 4 HOH A 166 466 466 HOH HOH . H 4 HOH A 167 467 467 HOH HOH . H 4 HOH A 168 468 468 HOH HOH . H 4 HOH A 169 469 469 HOH HOH . H 4 HOH A 170 470 470 HOH HOH . H 4 HOH A 171 471 471 HOH HOH . H 4 HOH A 172 472 472 HOH HOH . H 4 HOH A 173 473 473 HOH HOH . H 4 HOH A 174 474 474 HOH HOH . H 4 HOH A 175 475 475 HOH HOH . H 4 HOH A 176 476 476 HOH HOH . H 4 HOH A 177 477 477 HOH HOH . H 4 HOH A 178 478 478 HOH HOH . H 4 HOH A 179 479 479 HOH HOH . H 4 HOH A 180 480 480 HOH HOH . H 4 HOH A 181 481 481 HOH HOH . H 4 HOH A 182 482 482 HOH HOH . H 4 HOH A 183 483 483 HOH HOH . H 4 HOH A 184 484 484 HOH HOH . H 4 HOH A 185 485 485 HOH HOH . H 4 HOH A 186 486 486 HOH HOH . H 4 HOH A 187 487 487 HOH HOH . H 4 HOH A 188 488 488 HOH HOH . H 4 HOH A 189 489 489 HOH HOH . H 4 HOH A 190 490 490 HOH HOH . H 4 HOH A 191 491 491 HOH HOH . H 4 HOH A 192 492 492 HOH HOH . H 4 HOH A 193 493 493 HOH HOH . H 4 HOH A 194 494 494 HOH HOH . H 4 HOH A 195 495 495 HOH HOH . H 4 HOH A 196 496 496 HOH HOH . H 4 HOH A 197 497 497 HOH HOH . H 4 HOH A 198 498 498 HOH HOH . H 4 HOH A 199 499 499 HOH HOH . H 4 HOH A 200 500 500 HOH HOH . H 4 HOH A 201 501 501 HOH HOH . H 4 HOH A 202 502 502 HOH HOH . H 4 HOH A 203 503 503 HOH HOH . H 4 HOH A 204 504 504 HOH HOH . H 4 HOH A 205 505 505 HOH HOH . H 4 HOH A 206 506 506 HOH HOH . H 4 HOH A 207 507 507 HOH HOH . H 4 HOH A 208 508 508 HOH HOH . H 4 HOH A 209 509 509 HOH HOH . H 4 HOH A 210 510 510 HOH HOH . H 4 HOH A 211 511 511 HOH HOH . H 4 HOH A 212 512 512 HOH HOH . H 4 HOH A 213 513 513 HOH HOH . H 4 HOH A 214 514 514 HOH HOH . H 4 HOH A 215 515 515 HOH HOH . H 4 HOH A 216 516 516 HOH HOH . H 4 HOH A 217 517 517 HOH HOH . H 4 HOH A 218 518 518 HOH HOH . H 4 HOH A 219 519 519 HOH HOH . H 4 HOH A 220 520 520 HOH HOH . H 4 HOH A 221 521 521 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 ZEA . . . C 2 -2.954 -11.122 5.824 1 32.37 ? O16 ZEA 202 A 1 HETATM 2 C C14 ZEA . . . C 2 -2.336 -12.388 6.062 1 23.92 ? C14 ZEA 202 A 1 HETATM 3 C C13 ZEA . . . C 2 -1.283 -12.345 7.158 1 21.53 ? C13 ZEA 202 A 1 HETATM 4 C C15 ZEA . . . C 2 -0.452 -13.582 7.331 1 23.88 ? C15 ZEA 202 A 1 HETATM 5 C C12 ZEA . . . C 2 -1.131 -11.244 7.936 1 20.26 ? C12 ZEA 202 A 1 HETATM 6 C C11 ZEA . . . C 2 -0.135 -11.103 9.046 1 18.55 ? C11 ZEA 202 A 1 HETATM 7 N N10 ZEA . . . C 2 1.006 -10.32 8.589 1 17.82 ? N10 ZEA 202 A 1 HETATM 8 C C6 ZEA . . . C 2 1.266 -9.075 9.093 1 15.49 ? C6 ZEA 202 A 1 HETATM 9 C C5 ZEA . . . C 2 2.239 -8.261 8.564 1 14.49 ? C5 ZEA 202 A 1 HETATM 10 N N9 ZEA . . . C 2 3.159 -8.372 7.529 1 17.77 ? N9 ZEA 202 A 1 HETATM 11 C C4 ZEA . . . C 2 2.449 -7.004 9.125 1 14.35 ? C4 ZEA 202 A 1 HETATM 12 N N7 ZEA . . . C 2 3.476 -6.369 8.455 1 18.93 ? N7 ZEA 202 A 1 HETATM 13 C C8 ZEA . . . C 2 3.869 -7.217 7.511 1 21.64 ? C8 ZEA 202 A 1 HETATM 14 N N3 ZEA . . . C 2 1.694 -6.568 10.174 1 15.03 ? N3 ZEA 202 A 1 HETATM 15 C C2 ZEA . . . C 2 0.76 -7.375 10.647 1 16.09 ? C2 ZEA 202 A 1 HETATM 16 N N1 ZEA . . . C 2 0.542 -8.583 10.113 1 14.91 ? N1 ZEA 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #