data_4RZ1 # _model_server_result.job_id -B5RRHSr6KcO3XsTMAGwmQ _model_server_result.datetime_utc '2025-06-12 16:29:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1002}' # _entry.id 4RZ1 # _exptl.entry_id 4RZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RZ1 _cell.length_a 141.294 _cell.length_b 141.294 _cell.length_c 141.294 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 A,B,C,D,E,F,G,H,I,J,K 3 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_564 -z+1/2,-x+1,y-1/2 0 0 -1 -1 0 0 0 1 0 70.647 141.294 -70.647 3 'crystal symmetry operation' 10_655 -y+1,z+1/2,-x+1/2 0 -1 0 0 0 1 -1 0 0 141.294 70.647 70.647 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 45 1_555 A SG CYS 58 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 217 A CYS 206 1_555 A SG CYS 221 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 259 A CYS 249 1_555 A SG CYS 296 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 B SG CYS 51 B CYS 45 1_555 B SG CYS 58 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 B SG CYS 217 B CYS 206 1_555 B SG CYS 221 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 B SG CYS 259 B CYS 249 1_555 B SG CYS 296 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 75 A ASN 67 1_555 C C1 NAG . A NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B ND2 ASN 75 B ASN 67 1_555 F C1 NAG . B NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 161 n n S C1 DMS sing 162 n n S C2 DMS sing 163 n n C1 H11 DMS sing 164 n n C1 H12 DMS sing 165 n n C1 H13 DMS sing 166 n n C2 H21 DMS sing 167 n n C2 H22 DMS sing 168 n n C2 H23 DMS sing 169 n n # _atom_sites.entry_id 4RZ1 _atom_sites.fract_transf_matrix[1][1] 0.007077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1000 1000 NAG NAG . D 3 3ZN A 1 1001 1001 3ZN LI1 . E 4 SO4 A 1 1002 1002 SO4 SO4 . F 2 NAG B 1 1000 1000 NAG NAG . G 3 3ZN B 1 1001 1001 3ZN LI1 . H 5 DMS B 1 1002 1002 DMS DMS . I 5 DMS B 1 1003 1003 DMS DMS . J 6 HOH A 1 1101 2 HOH HOH . J 6 HOH A 2 1102 4 HOH HOH . J 6 HOH A 3 1103 5 HOH HOH . J 6 HOH A 4 1104 7 HOH HOH . J 6 HOH A 5 1105 9 HOH HOH . J 6 HOH A 6 1106 10 HOH HOH . J 6 HOH A 7 1107 12 HOH HOH . J 6 HOH A 8 1108 14 HOH HOH . J 6 HOH A 9 1109 15 HOH HOH . J 6 HOH A 10 1110 16 HOH HOH . J 6 HOH A 11 1111 18 HOH HOH . J 6 HOH A 12 1112 19 HOH HOH . J 6 HOH A 13 1113 20 HOH HOH . J 6 HOH A 14 1114 21 HOH HOH . J 6 HOH A 15 1115 23 HOH HOH . J 6 HOH A 16 1116 24 HOH HOH . J 6 HOH A 17 1117 25 HOH HOH . J 6 HOH A 18 1118 26 HOH HOH . J 6 HOH A 19 1119 27 HOH HOH . J 6 HOH A 20 1120 28 HOH HOH . J 6 HOH A 21 1121 29 HOH HOH . J 6 HOH A 22 1122 32 HOH HOH . J 6 HOH A 23 1123 33 HOH HOH . J 6 HOH A 24 1124 34 HOH HOH . J 6 HOH A 25 1125 35 HOH HOH . J 6 HOH A 26 1126 37 HOH HOH . J 6 HOH A 27 1127 39 HOH HOH . J 6 HOH A 28 1128 41 HOH HOH . J 6 HOH A 29 1129 42 HOH HOH . J 6 HOH A 30 1130 43 HOH HOH . J 6 HOH A 31 1131 44 HOH HOH . J 6 HOH A 32 1132 45 HOH HOH . J 6 HOH A 33 1133 46 HOH HOH . J 6 HOH A 34 1134 48 HOH HOH . J 6 HOH A 35 1135 49 HOH HOH . J 6 HOH A 36 1136 51 HOH HOH . J 6 HOH A 37 1137 53 HOH HOH . J 6 HOH A 38 1138 55 HOH HOH . J 6 HOH A 39 1139 56 HOH HOH . J 6 HOH A 40 1140 57 HOH HOH . J 6 HOH A 41 1141 58 HOH HOH . J 6 HOH A 42 1142 59 HOH HOH . J 6 HOH A 43 1143 60 HOH HOH . J 6 HOH A 44 1144 70 HOH HOH . J 6 HOH A 45 1145 71 HOH HOH . J 6 HOH A 46 1146 74 HOH HOH . J 6 HOH A 47 1147 76 HOH HOH . J 6 HOH A 48 1148 77 HOH HOH . J 6 HOH A 49 1149 79 HOH HOH . J 6 HOH A 50 1150 80 HOH HOH . J 6 HOH A 51 1151 82 HOH HOH . J 6 HOH A 52 1152 83 HOH HOH . J 6 HOH A 53 1153 86 HOH HOH . J 6 HOH A 54 1154 88 HOH HOH . J 6 HOH A 55 1155 89 HOH HOH . J 6 HOH A 56 1156 91 HOH HOH . J 6 HOH A 57 1157 92 HOH HOH . J 6 HOH A 58 1158 93 HOH HOH . J 6 HOH A 59 1159 94 HOH HOH . J 6 HOH A 60 1160 96 HOH HOH . J 6 HOH A 61 1161 101 HOH HOH . J 6 HOH A 62 1162 103 HOH HOH . J 6 HOH A 63 1163 105 HOH HOH . J 6 HOH A 64 1164 107 HOH HOH . J 6 HOH A 65 1165 108 HOH HOH . J 6 HOH A 66 1166 112 HOH HOH . J 6 HOH A 67 1167 113 HOH HOH . J 6 HOH A 68 1168 120 HOH HOH . J 6 HOH A 69 1169 121 HOH HOH . J 6 HOH A 70 1170 122 HOH HOH . J 6 HOH A 71 1171 129 HOH HOH . J 6 HOH A 72 1172 131 HOH HOH . J 6 HOH A 73 1173 132 HOH HOH . J 6 HOH A 74 1174 134 HOH HOH . J 6 HOH A 75 1175 137 HOH HOH . J 6 HOH A 76 1176 139 HOH HOH . J 6 HOH A 77 1177 140 HOH HOH . J 6 HOH A 78 1178 141 HOH HOH . J 6 HOH A 79 1179 143 HOH HOH . J 6 HOH A 80 1180 144 HOH HOH . J 6 HOH A 81 1181 145 HOH HOH . J 6 HOH A 82 1182 148 HOH HOH . J 6 HOH A 83 1183 151 HOH HOH . J 6 HOH A 84 1184 152 HOH HOH . J 6 HOH A 85 1185 154 HOH HOH . J 6 HOH A 86 1186 157 HOH HOH . J 6 HOH A 87 1187 159 HOH HOH . J 6 HOH A 88 1188 160 HOH HOH . J 6 HOH A 89 1189 161 HOH HOH . J 6 HOH A 90 1190 163 HOH HOH . J 6 HOH A 91 1191 168 HOH HOH . J 6 HOH A 92 1192 169 HOH HOH . J 6 HOH A 93 1193 171 HOH HOH . J 6 HOH A 94 1194 174 HOH HOH . J 6 HOH A 95 1195 175 HOH HOH . K 6 HOH B 1 1101 1 HOH HOH . K 6 HOH B 2 1102 3 HOH HOH . K 6 HOH B 3 1103 6 HOH HOH . K 6 HOH B 4 1104 8 HOH HOH . K 6 HOH B 5 1105 11 HOH HOH . K 6 HOH B 6 1106 13 HOH HOH . K 6 HOH B 7 1107 17 HOH HOH . K 6 HOH B 8 1108 22 HOH HOH . K 6 HOH B 9 1109 30 HOH HOH . K 6 HOH B 10 1110 31 HOH HOH . K 6 HOH B 11 1111 36 HOH HOH . K 6 HOH B 12 1112 38 HOH HOH . K 6 HOH B 13 1113 40 HOH HOH . K 6 HOH B 14 1114 47 HOH HOH . K 6 HOH B 15 1115 50 HOH HOH . K 6 HOH B 16 1116 52 HOH HOH . K 6 HOH B 17 1117 54 HOH HOH . K 6 HOH B 18 1118 61 HOH HOH . K 6 HOH B 19 1119 62 HOH HOH . K 6 HOH B 20 1120 63 HOH HOH . K 6 HOH B 21 1121 64 HOH HOH . K 6 HOH B 22 1122 65 HOH HOH . K 6 HOH B 23 1123 66 HOH HOH . K 6 HOH B 24 1124 67 HOH HOH . K 6 HOH B 25 1125 68 HOH HOH . K 6 HOH B 26 1126 69 HOH HOH . K 6 HOH B 27 1127 72 HOH HOH . K 6 HOH B 28 1128 73 HOH HOH . K 6 HOH B 29 1129 75 HOH HOH . K 6 HOH B 30 1130 78 HOH HOH . K 6 HOH B 31 1131 81 HOH HOH . K 6 HOH B 32 1132 84 HOH HOH . K 6 HOH B 33 1133 85 HOH HOH . K 6 HOH B 34 1134 87 HOH HOH . K 6 HOH B 35 1135 90 HOH HOH . K 6 HOH B 36 1136 95 HOH HOH . K 6 HOH B 37 1137 97 HOH HOH . K 6 HOH B 38 1138 98 HOH HOH . K 6 HOH B 39 1139 99 HOH HOH . K 6 HOH B 40 1140 100 HOH HOH . K 6 HOH B 41 1141 102 HOH HOH . K 6 HOH B 42 1142 104 HOH HOH . K 6 HOH B 43 1143 106 HOH HOH . K 6 HOH B 44 1144 109 HOH HOH . K 6 HOH B 45 1145 110 HOH HOH . K 6 HOH B 46 1146 111 HOH HOH . K 6 HOH B 47 1147 114 HOH HOH . K 6 HOH B 48 1148 115 HOH HOH . K 6 HOH B 49 1149 116 HOH HOH . K 6 HOH B 50 1150 117 HOH HOH . K 6 HOH B 51 1151 118 HOH HOH . K 6 HOH B 52 1152 119 HOH HOH . K 6 HOH B 53 1153 123 HOH HOH . K 6 HOH B 54 1154 124 HOH HOH . K 6 HOH B 55 1155 125 HOH HOH . K 6 HOH B 56 1156 126 HOH HOH . K 6 HOH B 57 1157 127 HOH HOH . K 6 HOH B 58 1158 128 HOH HOH . K 6 HOH B 59 1159 130 HOH HOH . K 6 HOH B 60 1160 133 HOH HOH . K 6 HOH B 61 1161 135 HOH HOH . K 6 HOH B 62 1162 136 HOH HOH . K 6 HOH B 63 1163 138 HOH HOH . K 6 HOH B 64 1164 142 HOH HOH . K 6 HOH B 65 1165 146 HOH HOH . K 6 HOH B 66 1166 147 HOH HOH . K 6 HOH B 67 1167 149 HOH HOH . K 6 HOH B 68 1168 150 HOH HOH . K 6 HOH B 69 1169 153 HOH HOH . K 6 HOH B 70 1170 155 HOH HOH . K 6 HOH B 71 1171 156 HOH HOH . K 6 HOH B 72 1172 158 HOH HOH . K 6 HOH B 73 1173 162 HOH HOH . K 6 HOH B 74 1174 164 HOH HOH . K 6 HOH B 75 1175 165 HOH HOH . K 6 HOH B 76 1176 166 HOH HOH . K 6 HOH B 77 1177 167 HOH HOH . K 6 HOH B 78 1178 170 HOH HOH . K 6 HOH B 79 1179 172 HOH HOH . K 6 HOH B 80 1180 173 HOH HOH . K 6 HOH B 81 1181 176 HOH HOH . K 6 HOH B 82 1182 177 HOH HOH . K 6 HOH B 83 1183 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 5 69.66 84.791 -17.016 1 74.43 ? S DMS 1002 B 1 HETATM 2 O O DMS . . . H 5 71.008 85.261 -16.651 1 73.46 ? O DMS 1002 B 1 HETATM 3 C C1 DMS . . . H 5 69.828 84.81 -18.773 1 77.08 ? C1 DMS 1002 B 1 HETATM 4 C C2 DMS . . . H 5 69.706 83.035 -16.755 1 73.58 ? C2 DMS 1002 B 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #