data_4RZJ # _model_server_result.job_id gh-hFoGxeDk0OLj8_IDoGw _model_server_result.datetime_utc '2024-11-13 13:21:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rzj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4RZJ # _exptl.entry_id 4RZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RZJ _cell.length_a 130.148 _cell.length_b 130.148 _cell.length_c 39.693 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 227 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.466 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4RZJ _atom_sites.fract_transf_matrix[1][1] 0.007684 _atom_sites.fract_transf_matrix[1][2] 0.004436 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 1 NAG NAG . C 2 NAG A 1 302 301 NAG NAG . D 3 GOL A 1 303 302 GOL GOL . E 3 GOL A 1 304 303 GOL GOL . F 4 HOH A 1 401 1 HOH HOH . F 4 HOH A 2 402 2 HOH HOH . F 4 HOH A 3 403 3 HOH HOH . F 4 HOH A 4 404 4 HOH HOH . F 4 HOH A 5 405 5 HOH HOH . F 4 HOH A 6 406 6 HOH HOH . F 4 HOH A 7 407 7 HOH HOH . F 4 HOH A 8 408 8 HOH HOH . F 4 HOH A 9 409 9 HOH HOH . F 4 HOH A 10 410 10 HOH HOH . F 4 HOH A 11 411 11 HOH HOH . F 4 HOH A 12 412 12 HOH HOH . F 4 HOH A 13 413 13 HOH HOH . F 4 HOH A 14 414 14 HOH HOH . F 4 HOH A 15 415 15 HOH HOH . F 4 HOH A 16 416 17 HOH HOH . F 4 HOH A 17 417 18 HOH HOH . F 4 HOH A 18 418 19 HOH HOH . F 4 HOH A 19 419 20 HOH HOH . F 4 HOH A 20 420 22 HOH HOH . F 4 HOH A 21 421 23 HOH HOH . F 4 HOH A 22 422 24 HOH HOH . F 4 HOH A 23 423 25 HOH HOH . F 4 HOH A 24 424 26 HOH HOH . F 4 HOH A 25 425 27 HOH HOH . F 4 HOH A 26 426 28 HOH HOH . F 4 HOH A 27 427 29 HOH HOH . F 4 HOH A 28 428 30 HOH HOH . F 4 HOH A 29 429 31 HOH HOH . F 4 HOH A 30 430 32 HOH HOH . F 4 HOH A 31 431 33 HOH HOH . F 4 HOH A 32 432 34 HOH HOH . F 4 HOH A 33 433 35 HOH HOH . F 4 HOH A 34 434 36 HOH HOH . F 4 HOH A 35 435 37 HOH HOH . F 4 HOH A 36 436 38 HOH HOH . F 4 HOH A 37 437 39 HOH HOH . F 4 HOH A 38 438 40 HOH HOH . F 4 HOH A 39 439 41 HOH HOH . F 4 HOH A 40 440 42 HOH HOH . F 4 HOH A 41 441 43 HOH HOH . F 4 HOH A 42 442 44 HOH HOH . F 4 HOH A 43 443 45 HOH HOH . F 4 HOH A 44 444 46 HOH HOH . F 4 HOH A 45 445 47 HOH HOH . F 4 HOH A 46 446 48 HOH HOH . F 4 HOH A 47 447 49 HOH HOH . F 4 HOH A 48 448 50 HOH HOH . F 4 HOH A 49 449 51 HOH HOH . F 4 HOH A 50 450 52 HOH HOH . F 4 HOH A 51 451 53 HOH HOH . F 4 HOH A 52 452 54 HOH HOH . F 4 HOH A 53 453 55 HOH HOH . F 4 HOH A 54 454 56 HOH HOH . F 4 HOH A 55 455 57 HOH HOH . F 4 HOH A 56 456 58 HOH HOH . F 4 HOH A 57 457 59 HOH HOH . F 4 HOH A 58 458 60 HOH HOH . F 4 HOH A 59 459 61 HOH HOH . F 4 HOH A 60 460 62 HOH HOH . F 4 HOH A 61 461 63 HOH HOH . F 4 HOH A 62 462 64 HOH HOH . F 4 HOH A 63 463 65 HOH HOH . F 4 HOH A 64 464 66 HOH HOH . F 4 HOH A 65 465 67 HOH HOH . F 4 HOH A 66 466 68 HOH HOH . F 4 HOH A 67 467 69 HOH HOH . F 4 HOH A 68 468 70 HOH HOH . F 4 HOH A 69 469 71 HOH HOH . F 4 HOH A 70 470 72 HOH HOH . F 4 HOH A 71 471 73 HOH HOH . F 4 HOH A 72 472 74 HOH HOH . F 4 HOH A 73 473 75 HOH HOH . F 4 HOH A 74 474 76 HOH HOH . F 4 HOH A 75 475 77 HOH HOH . F 4 HOH A 76 476 78 HOH HOH . F 4 HOH A 77 477 79 HOH HOH . F 4 HOH A 78 478 80 HOH HOH . F 4 HOH A 79 479 81 HOH HOH . F 4 HOH A 80 480 82 HOH HOH . F 4 HOH A 81 481 83 HOH HOH . F 4 HOH A 82 482 84 HOH HOH . F 4 HOH A 83 483 85 HOH HOH . F 4 HOH A 84 484 86 HOH HOH . F 4 HOH A 85 485 87 HOH HOH . F 4 HOH A 86 486 88 HOH HOH . F 4 HOH A 87 487 89 HOH HOH . F 4 HOH A 88 488 90 HOH HOH . F 4 HOH A 89 489 91 HOH HOH . F 4 HOH A 90 490 92 HOH HOH . F 4 HOH A 91 491 93 HOH HOH . F 4 HOH A 92 492 94 HOH HOH . F 4 HOH A 93 493 95 HOH HOH . F 4 HOH A 94 494 96 HOH HOH . F 4 HOH A 95 495 97 HOH HOH . F 4 HOH A 96 496 98 HOH HOH . F 4 HOH A 97 497 99 HOH HOH . F 4 HOH A 98 498 102 HOH HOH . F 4 HOH A 99 499 103 HOH HOH . F 4 HOH A 100 500 104 HOH HOH . F 4 HOH A 101 501 105 HOH HOH . F 4 HOH A 102 502 107 HOH HOH . F 4 HOH A 103 503 108 HOH HOH . F 4 HOH A 104 504 109 HOH HOH . F 4 HOH A 105 505 110 HOH HOH . F 4 HOH A 106 506 111 HOH HOH . F 4 HOH A 107 507 112 HOH HOH . F 4 HOH A 108 508 113 HOH HOH . F 4 HOH A 109 509 114 HOH HOH . F 4 HOH A 110 510 115 HOH HOH . F 4 HOH A 111 511 116 HOH HOH . F 4 HOH A 112 512 117 HOH HOH . F 4 HOH A 113 513 118 HOH HOH . F 4 HOH A 114 514 119 HOH HOH . F 4 HOH A 115 515 121 HOH HOH . F 4 HOH A 116 516 122 HOH HOH . F 4 HOH A 117 517 123 HOH HOH . F 4 HOH A 118 518 124 HOH HOH . F 4 HOH A 119 519 125 HOH HOH . F 4 HOH A 120 520 126 HOH HOH . F 4 HOH A 121 521 127 HOH HOH . F 4 HOH A 122 522 128 HOH HOH . F 4 HOH A 123 523 129 HOH HOH . F 4 HOH A 124 524 130 HOH HOH . F 4 HOH A 125 525 131 HOH HOH . F 4 HOH A 126 526 132 HOH HOH . F 4 HOH A 127 527 133 HOH HOH . F 4 HOH A 128 528 134 HOH HOH . F 4 HOH A 129 529 135 HOH HOH . F 4 HOH A 130 530 136 HOH HOH . F 4 HOH A 131 531 137 HOH HOH . F 4 HOH A 132 532 138 HOH HOH . F 4 HOH A 133 533 139 HOH HOH . F 4 HOH A 134 534 140 HOH HOH . F 4 HOH A 135 535 141 HOH HOH . F 4 HOH A 136 536 142 HOH HOH . F 4 HOH A 137 537 143 HOH HOH . F 4 HOH A 138 538 144 HOH HOH . F 4 HOH A 139 539 145 HOH HOH . F 4 HOH A 140 540 146 HOH HOH . F 4 HOH A 141 541 147 HOH HOH . F 4 HOH A 142 542 148 HOH HOH . F 4 HOH A 143 543 149 HOH HOH . F 4 HOH A 144 544 150 HOH HOH . F 4 HOH A 145 545 151 HOH HOH . F 4 HOH A 146 546 152 HOH HOH . F 4 HOH A 147 547 154 HOH HOH . F 4 HOH A 148 548 155 HOH HOH . F 4 HOH A 149 549 156 HOH HOH . F 4 HOH A 150 550 157 HOH HOH . F 4 HOH A 151 551 158 HOH HOH . F 4 HOH A 152 552 159 HOH HOH . F 4 HOH A 153 553 160 HOH HOH . F 4 HOH A 154 554 161 HOH HOH . F 4 HOH A 155 555 162 HOH HOH . F 4 HOH A 156 556 164 HOH HOH . F 4 HOH A 157 557 165 HOH HOH . F 4 HOH A 158 558 166 HOH HOH . F 4 HOH A 159 559 168 HOH HOH . F 4 HOH A 160 560 171 HOH HOH . F 4 HOH A 161 561 172 HOH HOH . F 4 HOH A 162 562 173 HOH HOH . F 4 HOH A 163 563 175 HOH HOH . F 4 HOH A 164 564 176 HOH HOH . F 4 HOH A 165 565 177 HOH HOH . F 4 HOH A 166 566 178 HOH HOH . F 4 HOH A 167 567 179 HOH HOH . F 4 HOH A 168 568 180 HOH HOH . F 4 HOH A 169 569 181 HOH HOH . F 4 HOH A 170 570 182 HOH HOH . F 4 HOH A 171 571 183 HOH HOH . F 4 HOH A 172 572 184 HOH HOH . F 4 HOH A 173 573 185 HOH HOH . F 4 HOH A 174 574 186 HOH HOH . F 4 HOH A 175 575 187 HOH HOH . F 4 HOH A 176 576 188 HOH HOH . F 4 HOH A 177 577 189 HOH HOH . F 4 HOH A 178 578 190 HOH HOH . F 4 HOH A 179 579 191 HOH HOH . F 4 HOH A 180 580 192 HOH HOH . F 4 HOH A 181 581 193 HOH HOH . F 4 HOH A 182 582 194 HOH HOH . F 4 HOH A 183 583 195 HOH HOH . F 4 HOH A 184 584 196 HOH HOH . F 4 HOH A 185 585 197 HOH HOH . F 4 HOH A 186 586 198 HOH HOH . F 4 HOH A 187 587 199 HOH HOH . F 4 HOH A 188 588 200 HOH HOH . F 4 HOH A 189 589 201 HOH HOH . F 4 HOH A 190 590 202 HOH HOH . F 4 HOH A 191 591 203 HOH HOH . F 4 HOH A 192 592 204 HOH HOH . F 4 HOH A 193 593 205 HOH HOH . F 4 HOH A 194 594 208 HOH HOH . F 4 HOH A 195 595 209 HOH HOH . F 4 HOH A 196 596 210 HOH HOH . F 4 HOH A 197 597 211 HOH HOH . F 4 HOH A 198 598 212 HOH HOH . F 4 HOH A 199 599 213 HOH HOH . F 4 HOH A 200 600 214 HOH HOH . F 4 HOH A 201 601 215 HOH HOH . F 4 HOH A 202 602 216 HOH HOH . F 4 HOH A 203 603 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 8.443 -37.631 -15.996 1 64.23 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . E 3 7.492 -37.419 -17.08 1 48.37 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . E 3 8.187 -38.678 -14.891 1 67.47 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . E 3 6.841 -39.148 -14.737 1 72.41 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . E 3 8.591 -38.038 -13.562 1 69.36 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . E 3 8.365 -38.966 -12.491 1 79.99 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #