data_4RZQ # _model_server_result.job_id lSCcWQzRYlXrrFB9lxtMBQ _model_server_result.datetime_utc '2025-01-11 02:02:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rzq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4RZQ # _exptl.entry_id 4RZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.373 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (3aS,4S,6aR)-4-(5-methoxy-5-oxopentyl)-2-oxohexahydro-1H-thieno[3,4-d]imidazole-1-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RZQ _cell.length_a 86.197 _cell.length_b 86.197 _cell.length_c 102.364 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 86.197 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H20 N2 O5 S' _chem_comp.formula_weight 316.373 _chem_comp.id Y7Y _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (3aS,4S,6aR)-4-(5-methoxy-5-oxopentyl)-2-oxohexahydro-1H-thieno[3,4-d]imidazole-1-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAU OAT Y7Y sing 420 n n OAT CAR Y7Y sing 421 n n CAR OAS Y7Y doub 422 n n CAR CAQ Y7Y sing 423 n n CAP CAQ Y7Y sing 424 n n CAP CAO Y7Y sing 425 n n CAO CAM Y7Y sing 426 n n CAM CAC Y7Y sing 427 n n CAC SAB Y7Y sing 428 n n CAC CAD Y7Y sing 429 n n SAB CAA Y7Y sing 430 n n CAD NAF Y7Y sing 431 n n CAD CAE Y7Y sing 432 n n CAA CAE Y7Y sing 433 n n NAF CAG Y7Y sing 434 n n CAE NAH Y7Y sing 435 n n CAG NAH Y7Y sing 436 n n CAG OAN Y7Y doub 437 n n NAH CAV Y7Y sing 438 n n CAV OAW Y7Y doub 439 n n CAV OAX Y7Y sing 440 n n CAY OAX Y7Y sing 441 n n CAU H1 Y7Y sing 442 n n CAU H2 Y7Y sing 443 n n CAU H3 Y7Y sing 444 n n CAQ H4 Y7Y sing 445 n n CAQ H5 Y7Y sing 446 n n CAP H6 Y7Y sing 447 n n CAP H7 Y7Y sing 448 n n CAO H8 Y7Y sing 449 n n CAO H9 Y7Y sing 450 n n CAM H10 Y7Y sing 451 n n CAM H11 Y7Y sing 452 n n CAC H12 Y7Y sing 453 n n CAA H13 Y7Y sing 454 n n CAA H14 Y7Y sing 455 n n CAE H15 Y7Y sing 456 n n CAD H16 Y7Y sing 457 n n NAF H17 Y7Y sing 458 n n CAY H18 Y7Y sing 459 n n CAY H19 Y7Y sing 460 n n CAY H20 Y7Y sing 461 n n # _atom_sites.entry_id 4RZQ _atom_sites.fract_transf_matrix[1][1] 0.011601 _atom_sites.fract_transf_matrix[1][2] 0.006698 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y7Y A 1 501 1 Y7Y Y7Y . C 3 ADP A 1 502 1001 ADP ADP . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 5 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 8 HOH HOH . D 4 HOH A 9 609 9 HOH HOH . D 4 HOH A 10 610 10 HOH HOH . D 4 HOH A 11 611 11 HOH HOH . D 4 HOH A 12 612 12 HOH HOH . D 4 HOH A 13 613 13 HOH HOH . D 4 HOH A 14 614 14 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 16 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 19 HOH HOH . D 4 HOH A 20 620 20 HOH HOH . D 4 HOH A 21 621 21 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 23 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 25 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 27 HOH HOH . D 4 HOH A 28 628 28 HOH HOH . D 4 HOH A 29 629 29 HOH HOH . D 4 HOH A 30 630 30 HOH HOH . D 4 HOH A 31 631 31 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 33 HOH HOH . D 4 HOH A 34 634 34 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 36 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 40 HOH HOH . D 4 HOH A 41 641 41 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 44 HOH HOH . D 4 HOH A 45 645 45 HOH HOH . D 4 HOH A 46 646 46 HOH HOH . D 4 HOH A 47 647 47 HOH HOH . D 4 HOH A 48 648 48 HOH HOH . D 4 HOH A 49 649 49 HOH HOH . D 4 HOH A 50 650 50 HOH HOH . D 4 HOH A 51 651 51 HOH HOH . D 4 HOH A 52 652 52 HOH HOH . D 4 HOH A 53 653 53 HOH HOH . D 4 HOH A 54 654 54 HOH HOH . D 4 HOH A 55 655 55 HOH HOH . D 4 HOH A 56 656 56 HOH HOH . D 4 HOH A 57 657 57 HOH HOH . D 4 HOH A 58 658 58 HOH HOH . D 4 HOH A 59 659 59 HOH HOH . D 4 HOH A 60 660 60 HOH HOH . D 4 HOH A 61 661 61 HOH HOH . D 4 HOH A 62 662 62 HOH HOH . D 4 HOH A 63 663 63 HOH HOH . D 4 HOH A 64 664 64 HOH HOH . D 4 HOH A 65 665 65 HOH HOH . D 4 HOH A 66 666 66 HOH HOH . D 4 HOH A 67 667 67 HOH HOH . D 4 HOH A 68 668 68 HOH HOH . D 4 HOH A 69 669 69 HOH HOH . D 4 HOH A 70 670 70 HOH HOH . D 4 HOH A 71 671 71 HOH HOH . D 4 HOH A 72 672 72 HOH HOH . D 4 HOH A 73 673 73 HOH HOH . D 4 HOH A 74 674 74 HOH HOH . D 4 HOH A 75 675 75 HOH HOH . D 4 HOH A 76 676 76 HOH HOH . D 4 HOH A 77 677 77 HOH HOH . D 4 HOH A 78 678 78 HOH HOH . D 4 HOH A 79 679 79 HOH HOH . D 4 HOH A 80 680 80 HOH HOH . D 4 HOH A 81 681 81 HOH HOH . D 4 HOH A 82 682 82 HOH HOH . D 4 HOH A 83 683 83 HOH HOH . D 4 HOH A 84 684 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAU Y7Y . . . B 2 24.268 4.831 -11.797 1 25.77 ? CAU Y7Y 501 A 1 HETATM 2 O OAT Y7Y . . . B 2 23.17 5.41 -11.122 1 42.87 ? OAT Y7Y 501 A 1 HETATM 3 C CAR Y7Y . . . B 2 23.078 5.085 -9.7 1 49.13 ? CAR Y7Y 501 A 1 HETATM 4 O OAS Y7Y . . . B 2 23.629 4.046 -9.272 1 25.42 ? OAS Y7Y 501 A 1 HETATM 5 C CAQ Y7Y . . . B 2 22.247 6.125 -8.709 1 38.88 ? CAQ Y7Y 501 A 1 HETATM 6 C CAP Y7Y . . . B 2 22.815 7.566 -8.817 1 50.93 ? CAP Y7Y 501 A 1 HETATM 7 C CAO Y7Y . . . B 2 23.166 8.421 -7.523 1 58.58 ? CAO Y7Y 501 A 1 HETATM 8 C CAM Y7Y . . . B 2 22.02 8.853 -6.552 1 56.78 ? CAM Y7Y 501 A 1 HETATM 9 C CAC Y7Y . . . B 2 22.426 10.221 -5.782 1 67.9 ? CAC Y7Y 501 A 1 HETATM 10 S SAB Y7Y . . . B 2 24.094 10.886 -5.634 1 81.63 ? SAB Y7Y 501 A 1 HETATM 11 C CAA Y7Y . . . B 2 24.045 11.932 -4.148 1 48.95 ? CAA Y7Y 501 A 1 HETATM 12 C CAE Y7Y . . . B 2 22.961 11.357 -3.358 1 56.42 ? CAE Y7Y 501 A 1 HETATM 13 C CAD Y7Y . . . B 2 22.144 10.23 -4.215 1 62.68 ? CAD Y7Y 501 A 1 HETATM 14 N NAF Y7Y . . . B 2 22.521 8.974 -3.528 1 60.8 ? NAF Y7Y 501 A 1 HETATM 15 C CAG Y7Y . . . B 2 23.28 9.311 -2.423 1 53.48 ? CAG Y7Y 501 A 1 HETATM 16 O OAN Y7Y . . . B 2 23.649 8.613 -1.553 1 26.93 ? OAN Y7Y 501 A 1 HETATM 17 N NAH Y7Y . . . B 2 23.639 10.552 -2.219 1 51.06 ? NAH Y7Y 501 A 1 HETATM 18 C CAV Y7Y . . . B 2 24.156 10.734 -1.025 1 43.45 ? CAV Y7Y 501 A 1 HETATM 19 O OAW Y7Y . . . B 2 25.168 11.389 -0.807 1 37.69 ? OAW Y7Y 501 A 1 HETATM 20 O OAX Y7Y . . . B 2 23.174 10.847 -0.129 1 56.34 ? OAX Y7Y 501 A 1 HETATM 21 C CAY Y7Y . . . B 2 22.435 12.12 -0.38 1 54.5 ? CAY Y7Y 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #