data_4S0F # _model_server_result.job_id qpnFy3j9S3gGIlpDW5gvqg _model_server_result.datetime_utc '2024-11-06 03:09:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4s0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 4S0F # _exptl.entry_id 4S0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4S0F _cell.length_a 230 _cell.length_b 230 _cell.length_c 89.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4S0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id AGS _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG S1G AGS doub 1 n n PG O2G AGS sing 2 n n PG O3G AGS sing 3 n n PG O3B AGS sing 4 n n PB O1B AGS doub 5 n n PB O2B AGS sing 6 n n PB O3B AGS sing 7 n n PB O3A AGS sing 8 n n PA O1A AGS doub 9 n n PA O2A AGS sing 10 n n PA O3A AGS sing 11 n n PA O5' AGS sing 12 n n O5' C5' AGS sing 13 n n C5' C4' AGS sing 14 n n C4' O4' AGS sing 15 n n C4' C3' AGS sing 16 n n O4' C1' AGS sing 17 n n C3' O3' AGS sing 18 n n C3' C2' AGS sing 19 n n C2' O2' AGS sing 20 n n C2' C1' AGS sing 21 n n C1' N9 AGS sing 22 n n N9 C8 AGS sing 23 n y N9 C4 AGS sing 24 n y C8 N7 AGS doub 25 n y N7 C5 AGS sing 26 n y C5 C6 AGS sing 27 n y C5 C4 AGS doub 28 n y C6 N6 AGS sing 29 n n C6 N1 AGS doub 30 n y N1 C2 AGS sing 31 n y C2 N3 AGS doub 32 n y N3 C4 AGS sing 33 n y O2G HOG2 AGS sing 34 n n O3G H21 AGS sing 35 n n O2B HOB2 AGS sing 36 n n O2A HOA2 AGS sing 37 n n C5' "H5'1" AGS sing 38 n n C5' "H5'2" AGS sing 39 n n C4' H4' AGS sing 40 n n C3' H3' AGS sing 41 n n O3' HO3' AGS sing 42 n n C2' H2' AGS sing 43 n n O2' HO2' AGS sing 44 n n C1' H1' AGS sing 45 n n C8 H8 AGS sing 46 n n N6 HN61 AGS sing 47 n n N6 HN62 AGS sing 48 n n C2 H2 AGS sing 49 n n # _atom_sites.entry_id 4S0F _atom_sites.fract_transf_matrix[1][1] 0.004348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AGS A 1 801 1 AGS AGS . D 2 AGS B 1 801 2 AGS AGS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG AGS . . . C 2 92.811 8.961 22.544 1 248.07 ? PG AGS 801 A 1 HETATM 2 S S1G AGS . . . C 2 90.967 9.4 22.12 1 248.07 ? S1G AGS 801 A 1 HETATM 3 O O2G AGS . . . C 2 92.882 7.618 23.337 1 248.07 ? O2G AGS 801 A 1 HETATM 4 O O3G AGS . . . C 2 93.356 10.106 23.448 1 248.07 ? O3G AGS 801 A 1 HETATM 5 P PB AGS . . . C 2 94.812 7.834 21.088 1 248.07 ? PB AGS 801 A 1 HETATM 6 O O1B AGS . . . C 2 96.095 8.577 21.022 1 248.07 ? O1B AGS 801 A 1 HETATM 7 O O2B AGS . . . C 2 94.638 6.955 22.331 1 248.07 ? O2B AGS 801 A 1 HETATM 8 O O3B AGS . . . C 2 93.611 8.864 21.203 1 248.07 ? O3B AGS 801 A 1 HETATM 9 P PA AGS . . . C 2 93.231 6.384 19.309 1 248.07 ? PA AGS 801 A 1 HETATM 10 O O1A AGS . . . C 2 92.106 7.027 20.013 1 248.07 ? O1A AGS 801 A 1 HETATM 11 O O2A AGS . . . C 2 93.055 6.77 17.84 1 248.07 ? O2A AGS 801 A 1 HETATM 12 O O3A AGS . . . C 2 94.678 6.889 19.8 1 248.07 ? O3A AGS 801 A 1 HETATM 13 O O5' AGS . . . C 2 93.195 4.813 19.52 1 248.07 ? O5' AGS 801 A 1 HETATM 14 C C5' AGS . . . C 2 93.583 3.977 18.426 1 248.07 ? C5' AGS 801 A 1 HETATM 15 C C4' AGS . . . C 2 94.117 2.713 19.033 1 248.07 ? C4' AGS 801 A 1 HETATM 16 O O4' AGS . . . C 2 93.391 1.584 18.512 1 248.07 ? O4' AGS 801 A 1 HETATM 17 C C3' AGS . . . C 2 95.604 2.442 18.786 1 248.07 ? C3' AGS 801 A 1 HETATM 18 O O3' AGS . . . C 2 96.302 2.435 20.026 1 248.07 ? O3' AGS 801 A 1 HETATM 19 C C2' AGS . . . C 2 95.627 1.067 18.101 1 248.07 ? C2' AGS 801 A 1 HETATM 20 O O2' AGS . . . C 2 96.677 0.244 18.595 1 248.07 ? O2' AGS 801 A 1 HETATM 21 C C1' AGS . . . C 2 94.27 0.488 18.485 1 248.07 ? C1' AGS 801 A 1 HETATM 22 N N9 AGS . . . C 2 93.765 -0.485 17.534 1 248.07 ? N9 AGS 801 A 1 HETATM 23 C C8 AGS . . . C 2 93.86 -0.441 16.167 1 248.07 ? C8 AGS 801 A 1 HETATM 24 N N7 AGS . . . C 2 93.32 -1.468 15.56 1 248.07 ? N7 AGS 801 A 1 HETATM 25 C C5 AGS . . . C 2 92.832 -2.245 16.6 1 248.07 ? C5 AGS 801 A 1 HETATM 26 C C6 AGS . . . C 2 92.15 -3.475 16.626 1 248.07 ? C6 AGS 801 A 1 HETATM 27 N N6 AGS . . . C 2 91.817 -4.162 15.53 1 248.07 ? N6 AGS 801 A 1 HETATM 28 N N1 AGS . . . C 2 91.802 -3.975 17.833 1 248.07 ? N1 AGS 801 A 1 HETATM 29 C C2 AGS . . . C 2 92.131 -3.29 18.932 1 248.07 ? C2 AGS 801 A 1 HETATM 30 N N3 AGS . . . C 2 92.776 -2.125 19.031 1 248.07 ? N3 AGS 801 A 1 HETATM 31 C C4 AGS . . . C 2 93.101 -1.653 17.82 1 248.07 ? C4 AGS 801 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #