data_4S1K
#
_model_server_result.job_id            a-WDUjQz6pLmKfpzMd4yCg 
_model_server_result.datetime_utc      '2025-04-15 17:29:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4s1k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4S1K 
#
_exptl.entry_id    4S1K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4S1K 
_cell.length_a            104.879 
_cell.length_b            104.879 
_cell.length_c            104.879 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4S1K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 104.879 0 104.879 
3 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 104.879 104.879 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O2G ATP . A ATP 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc2 B O2A ATP . A ATP 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc3 B O2B ATP . A ATP 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
metalc ? metalc4 C MG MG . A MG 302 1_555 D O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc5 C MG MG . A MG 302 1_555 D O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
metalc ? metalc6 C MG MG . A MG 302 1_555 D O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     4S1K 
_atom_sites.fract_transf_matrix[1][1]    0.009535 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009535 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 301 252 ATP ATP . 
C 3 MG A 1 302 1 MG MG . 
D 4 HOH A 1 401 1 HOH HOH . 
D 4 HOH A 2 402 2 HOH HOH . 
D 4 HOH A 3 403 3 HOH HOH . 
D 4 HOH A 4 404 4 HOH HOH . 
D 4 HOH A 5 405 5 HOH HOH . 
D 4 HOH A 6 406 6 HOH HOH . 
D 4 HOH A 7 407 7 HOH HOH . 
D 4 HOH A 8 408 8 HOH HOH . 
D 4 HOH A 9 409 9 HOH HOH . 
D 4 HOH A 10 410 10 HOH HOH . 
D 4 HOH A 11 411 11 HOH HOH . 
D 4 HOH A 12 412 12 HOH HOH . 
D 4 HOH A 13 413 13 HOH HOH . 
D 4 HOH A 14 414 14 HOH HOH . 
D 4 HOH A 15 415 15 HOH HOH . 
D 4 HOH A 16 416 16 HOH HOH . 
D 4 HOH A 17 417 17 HOH HOH . 
D 4 HOH A 18 418 18 HOH HOH . 
D 4 HOH A 19 419 19 HOH HOH . 
D 4 HOH A 20 420 20 HOH HOH . 
D 4 HOH A 21 421 21 HOH HOH . 
D 4 HOH A 22 422 22 HOH HOH . 
D 4 HOH A 23 423 23 HOH HOH . 
D 4 HOH A 24 424 24 HOH HOH . 
D 4 HOH A 25 425 25 HOH HOH . 
D 4 HOH A 26 426 26 HOH HOH . 
D 4 HOH A 27 427 27 HOH HOH . 
D 4 HOH A 28 428 28 HOH HOH . 
D 4 HOH A 29 429 29 HOH HOH . 
D 4 HOH A 30 430 30 HOH HOH . 
D 4 HOH A 31 431 31 HOH HOH . 
D 4 HOH A 32 432 32 HOH HOH . 
D 4 HOH A 33 433 33 HOH HOH . 
D 4 HOH A 34 434 34 HOH HOH . 
D 4 HOH A 35 435 35 HOH HOH . 
D 4 HOH A 36 436 36 HOH HOH . 
D 4 HOH A 37 437 37 HOH HOH . 
D 4 HOH A 38 438 38 HOH HOH . 
D 4 HOH A 39 439 39 HOH HOH . 
D 4 HOH A 40 440 40 HOH HOH . 
D 4 HOH A 41 441 41 HOH HOH . 
D 4 HOH A 42 442 42 HOH HOH . 
D 4 HOH A 43 443 43 HOH HOH . 
D 4 HOH A 44 444 44 HOH HOH . 
D 4 HOH A 45 445 45 HOH HOH . 
D 4 HOH A 46 446 46 HOH HOH . 
D 4 HOH A 47 447 47 HOH HOH . 
D 4 HOH A 48 448 48 HOH HOH . 
D 4 HOH A 49 449 49 HOH HOH . 
D 4 HOH A 50 450 50 HOH HOH . 
D 4 HOH A 51 451 51 HOH HOH . 
D 4 HOH A 52 452 52 HOH HOH . 
D 4 HOH A 53 453 53 HOH HOH . 
D 4 HOH A 54 454 54 HOH HOH . 
D 4 HOH A 55 455 55 HOH HOH . 
D 4 HOH A 56 456 56 HOH HOH . 
D 4 HOH A 57 457 57 HOH HOH . 
D 4 HOH A 58 458 58 HOH HOH . 
D 4 HOH A 59 459 59 HOH HOH . 
D 4 HOH A 60 460 60 HOH HOH . 
D 4 HOH A 61 461 61 HOH HOH . 
D 4 HOH A 62 462 62 HOH HOH . 
D 4 HOH A 63 463 63 HOH HOH . 
D 4 HOH A 64 464 64 HOH HOH . 
D 4 HOH A 65 465 65 HOH HOH . 
D 4 HOH A 66 466 66 HOH HOH . 
D 4 HOH A 67 467 67 HOH HOH . 
D 4 HOH A 68 468 68 HOH HOH . 
D 4 HOH A 69 469 69 HOH HOH . 
D 4 HOH A 70 470 70 HOH HOH . 
D 4 HOH A 71 471 71 HOH HOH . 
D 4 HOH A 72 472 72 HOH HOH . 
D 4 HOH A 73 473 73 HOH HOH . 
D 4 HOH A 74 474 74 HOH HOH . 
D 4 HOH A 75 475 75 HOH HOH . 
D 4 HOH A 76 476 76 HOH HOH . 
D 4 HOH A 77 477 77 HOH HOH . 
D 4 HOH A 78 478 78 HOH HOH . 
D 4 HOH A 79 479 79 HOH HOH . 
D 4 HOH A 80 480 80 HOH HOH . 
D 4 HOH A 81 481 81 HOH HOH . 
D 4 HOH A 82 482 82 HOH HOH . 
D 4 HOH A 83 483 83 HOH HOH . 
D 4 HOH A 84 484 84 HOH HOH . 
D 4 HOH A 85 485 85 HOH HOH . 
D 4 HOH A 86 486 86 HOH HOH . 
D 4 HOH A 87 487 87 HOH HOH . 
D 4 HOH A 88 488 88 HOH HOH . 
D 4 HOH A 89 489 89 HOH HOH . 
D 4 HOH A 90 490 90 HOH HOH . 
D 4 HOH A 91 491 92 HOH HOH . 
D 4 HOH A 92 492 93 HOH HOH . 
D 4 HOH A 93 493 94 HOH HOH . 
D 4 HOH A 94 494 95 HOH HOH . 
D 4 HOH A 95 495 96 HOH HOH . 
D 4 HOH A 96 496 97 HOH HOH . 
D 4 HOH A 97 497 98 HOH HOH . 
D 4 HOH A 98 498 99 HOH HOH . 
D 4 HOH A 99 499 100 HOH HOH . 
D 4 HOH A 100 500 101 HOH HOH . 
D 4 HOH A 101 501 102 HOH HOH . 
D 4 HOH A 102 502 103 HOH HOH . 
D 4 HOH A 103 503 104 HOH HOH . 
D 4 HOH A 104 504 105 HOH HOH . 
D 4 HOH A 105 505 106 HOH HOH . 
D 4 HOH A 106 506 107 HOH HOH . 
D 4 HOH A 107 507 108 HOH HOH . 
D 4 HOH A 108 508 109 HOH HOH . 
D 4 HOH A 109 509 111 HOH HOH . 
D 4 HOH A 110 510 113 HOH HOH . 
D 4 HOH A 111 511 114 HOH HOH . 
D 4 HOH A 112 512 115 HOH HOH . 
D 4 HOH A 113 513 116 HOH HOH . 
D 4 HOH A 114 514 117 HOH HOH . 
D 4 HOH A 115 515 118 HOH HOH . 
D 4 HOH A 116 516 120 HOH HOH . 
D 4 HOH A 117 517 121 HOH HOH . 
D 4 HOH A 118 518 122 HOH HOH . 
D 4 HOH A 119 519 123 HOH HOH . 
D 4 HOH A 120 520 126 HOH HOH . 
D 4 HOH A 121 521 127 HOH HOH . 
D 4 HOH A 122 522 130 HOH HOH . 
D 4 HOH A 123 523 142 HOH HOH . 
D 4 HOH A 124 524 153 HOH HOH . 
D 4 HOH A 125 525 154 HOH HOH . 
D 4 HOH A 126 526 157 HOH HOH . 
D 4 HOH A 127 527 170 HOH HOH . 
D 4 HOH A 128 528 173 HOH HOH . 
D 4 HOH A 129 529 196 HOH HOH . 
D 4 HOH A 130 530 200 HOH HOH . 
D 4 HOH A 131 531 206 HOH HOH . 
D 4 HOH A 132 532 207 HOH HOH . 
D 4 HOH A 133 533 215 HOH HOH . 
D 4 HOH A 134 534 217 HOH HOH . 
D 4 HOH A 135 535 218 HOH HOH . 
D 4 HOH A 136 536 219 HOH HOH . 
D 4 HOH A 137 537 220 HOH HOH . 
D 4 HOH A 138 538 221 HOH HOH . 
D 4 HOH A 139 539 222 HOH HOH . 
D 4 HOH A 140 540 223 HOH HOH . 
D 4 HOH A 141 541 224 HOH HOH . 
D 4 HOH A 142 542 225 HOH HOH . 
D 4 HOH A 143 543 226 HOH HOH . 
D 4 HOH A 144 544 227 HOH HOH . 
D 4 HOH A 145 545 228 HOH HOH . 
D 4 HOH A 146 546 229 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . B 2 7.613 19.862 53.442 1 41.06 ? PG ATP 301 A 1 
HETATM 2 O O1G ATP . . . B 2 8.238 20.925 54.328 1 37.07 ? O1G ATP 301 A 1 
HETATM 3 O O2G ATP . . . B 2 6.125 20.054 53.235 1 45.56 ? O2G ATP 301 A 1 
HETATM 4 O O3G ATP . . . B 2 7.971 18.412 53.725 1 34.8 ? O3G ATP 301 A 1 
HETATM 5 P PB ATP . . . B 2 7.471 20.073 50.568 1 46.05 ? PB ATP 301 A 1 
HETATM 6 O O1B ATP . . . B 2 8.545 19.938 49.509 1 45.35 ? O1B ATP 301 A 1 
HETATM 7 O O2B ATP . . . B 2 6.375 19.016 50.623 1 49.26 ? O2B ATP 301 A 1 
HETATM 8 O O3B ATP . . . B 2 8.261 20.15 51.996 1 43.61 ? O3B ATP 301 A 1 
HETATM 9 P PA ATP . . . B 2 5.272 21.902 50.094 1 57.08 ? PA ATP 301 A 1 
HETATM 10 O O1A ATP . . . B 2 5.187 22.258 48.615 1 51.42 ? O1A ATP 301 A 1 
HETATM 11 O O2A ATP . . . B 2 4.35 20.811 50.638 1 52.82 ? O2A ATP 301 A 1 
HETATM 12 O O3A ATP . . . B 2 6.817 21.564 50.492 1 50 ? O3A ATP 301 A 1 
HETATM 13 O O5' ATP . . . B 2 5.031 23.28 50.931 1 55.81 ? O5' ATP 301 A 1 
HETATM 14 C C5' ATP . . . B 2 5.319 23.399 52.323 1 54.24 ? C5' ATP 301 A 1 
HETATM 15 C C4' ATP . . . B 2 5.027 24.818 52.773 1 53.62 ? C4' ATP 301 A 1 
HETATM 16 O O4' ATP . . . B 2 5.89 25.78 52.139 1 52.46 ? O4' ATP 301 A 1 
HETATM 17 C C3' ATP . . . B 2 3.604 25.184 52.401 1 55.06 ? C3' ATP 301 A 1 
HETATM 18 O O3' ATP . . . B 2 2.929 25.75 53.531 1 61.87 ? O3' ATP 301 A 1 
HETATM 19 C C2' ATP . . . B 2 3.787 26.182 51.278 1 54.2 ? C2' ATP 301 A 1 
HETATM 20 O O2' ATP . . . B 2 2.7 27.107 51.159 1 58.21 ? O2' ATP 301 A 1 
HETATM 21 C C1' ATP . . . B 2 5.12 26.858 51.588 1 52.13 ? C1' ATP 301 A 1 
HETATM 22 N N9 ATP . . . B 2 5.617 27.502 50.319 1 51.24 ? N9 ATP 301 A 1 
HETATM 23 C C8 ATP . . . B 2 5.893 26.88 49.135 1 49.11 ? C8 ATP 301 A 1 
HETATM 24 N N7 ATP . . . B 2 6.284 27.777 48.187 1 46.03 ? N7 ATP 301 A 1 
HETATM 25 C C5 ATP . . . B 2 6.248 29.015 48.744 1 48.07 ? C5 ATP 301 A 1 
HETATM 26 C C6 ATP . . . B 2 6.527 30.421 48.302 1 47.53 ? C6 ATP 301 A 1 
HETATM 27 N N6 ATP . . . B 2 6.95 30.743 47.037 1 47.89 ? N6 ATP 301 A 1 
HETATM 28 N N1 ATP . . . B 2 6.354 31.395 49.225 1 50.12 ? N1 ATP 301 A 1 
HETATM 29 C C2 ATP . . . B 2 5.941 31.152 50.49 1 50.35 ? C2 ATP 301 A 1 
HETATM 30 N N3 ATP . . . B 2 5.67 29.914 50.942 1 50.49 ? N3 ATP 301 A 1 
HETATM 31 C C4 ATP . . . B 2 5.802 28.822 50.142 1 48.74 ? C4 ATP 301 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#