data_4S21 # _model_server_result.job_id zxi9tSHvKVrZDgipIJCoHA _model_server_result.datetime_utc '2024-11-23 12:13:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4s21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 4S21 # _exptl.entry_id 4S21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4S21 _cell.length_a 175.36 _cell.length_b 175.36 _cell.length_c 96.19 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4S21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 35 A CYS 15 1_555 C CBC BLA . A BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.644 ? covale ? covale2 B SG CYS 35 B CYS 15 1_555 D CBC BLA . B BLA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.661 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 4S21 _atom_sites.fract_transf_matrix[1][1] 0.005703 _atom_sites.fract_transf_matrix[1][2] 0.003292 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BLA A 1 900 900 BLA BLA . D 2 BLA B 1 900 900 BLA BLA . E 3 HOH A 1 1001 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . D 2 40.753 -35.781 17.113 1 151.1 ? CHA BLA 900 B 1 HETATM 2 N NA BLA . . . D 2 42.623 -34.617 16 1 134.1 ? NA BLA 900 B 1 HETATM 3 C C1A BLA . . . D 2 41.719 -35.579 16.135 1 134.81 ? C1A BLA 900 B 1 HETATM 4 C C2A BLA . . . D 2 41.883 -36.476 15.099 1 136.77 ? C2A BLA 900 B 1 HETATM 5 C C3A BLA . . . D 2 42.925 -35.997 14.335 1 147.15 ? C3A BLA 900 B 1 HETATM 6 C C4A BLA . . . D 2 43.373 -34.809 14.921 1 142.35 ? C4A BLA 900 B 1 HETATM 7 C CMA BLA . . . D 2 43.432 -36.711 13.08 1 154.69 ? CMA BLA 900 B 1 HETATM 8 C CAA BLA . . . D 2 41.071 -37.738 14.873 1 137.51 ? CAA BLA 900 B 1 HETATM 9 C CBA BLA . . . D 2 39.852 -37.5 13.965 1 138.78 ? CBA BLA 900 B 1 HETATM 10 C CGA BLA . . . D 2 40.232 -37.009 12.556 1 141.23 ? CGA BLA 900 B 1 HETATM 11 O O1A BLA . . . D 2 40.291 -35.775 12.371 1 137.61 ? O1A BLA 900 B 1 HETATM 12 O O2A BLA . . . D 2 40.486 -37.878 11.691 1 144.79 ? O2A BLA 900 B 1 HETATM 13 C CHB BLA . . . D 2 44.482 -33.808 14.544 1 144.89 ? CHB BLA 900 B 1 HETATM 14 N NB BLA . . . D 2 44.275 -34.006 11.964 1 137.83 ? NB BLA 900 B 1 HETATM 15 C C1B BLA . . . D 2 44.984 -33.888 13.1 1 141.76 ? C1B BLA 900 B 1 HETATM 16 C C2B BLA . . . D 2 46.325 -33.842 12.759 1 142.4 ? C2B BLA 900 B 1 HETATM 17 C C3B BLA . . . D 2 46.423 -33.95 11.396 1 140.47 ? C3B BLA 900 B 1 HETATM 18 C C4B BLA . . . D 2 45.118 -34.054 10.927 1 140.14 ? C4B BLA 900 B 1 HETATM 19 C CMB BLA . . . D 2 47.495 -33.703 13.738 1 145.51 ? CMB BLA 900 B 1 HETATM 20 O OB BLA . . . D 2 44.767 -34.166 9.753 1 142.81 ? OB BLA 900 B 1 HETATM 21 C CAB BLA . . . D 2 47.631 -33.941 10.708 1 143 ? CAB BLA 900 B 1 HETATM 22 C CBB BLA . . . D 2 47.688 -34.054 9.328 1 147.15 ? CBB BLA 900 B 1 HETATM 23 N NC BLA . . . D 2 42.512 -30.584 18.467 1 176.74 ? NC BLA 900 B 1 HETATM 24 C C1C BLA . . . D 2 43.342 -29.537 18.49 1 169.44 ? C1C BLA 900 B 1 HETATM 25 C C2C BLA . . . D 2 43.537 -29.114 19.795 1 161.16 ? C2C BLA 900 B 1 HETATM 26 C C3C BLA . . . D 2 42.787 -29.955 20.603 1 167.42 ? C3C BLA 900 B 1 HETATM 27 C C4C BLA . . . D 2 42.167 -30.849 19.734 1 167.22 ? C4C BLA 900 B 1 HETATM 28 C CMC BLA . . . D 2 44.426 -27.939 20.22 1 141.8 ? CMC BLA 900 B 1 HETATM 29 O OC BLA . . . D 2 43.866 -29.025 17.504 1 172.25 ? OC BLA 900 B 1 HETATM 30 C CAC BLA . . . D 2 42.572 -29.974 22.139 1 183.78 ? CAC BLA 900 B 1 HETATM 31 C CBC BLA . . . D 2 43.825 -29.964 23.03 1 177.77 ? CBC BLA 900 B 1 HETATM 32 C CHD BLA . . . D 2 41.232 -31.903 20.315 1 165.96 ? CHD BLA 900 B 1 HETATM 33 N ND BLA . . . D 2 41.315 -33.711 18.396 1 161.92 ? ND BLA 900 B 1 HETATM 34 C C1D BLA . . . D 2 40.879 -33.165 19.535 1 163.36 ? C1D BLA 900 B 1 HETATM 35 C C2D BLA . . . D 2 39.93 -34.003 20.045 1 160.39 ? C2D BLA 900 B 1 HETATM 36 C C3D BLA . . . D 2 39.747 -35.07 19.216 1 155.58 ? C3D BLA 900 B 1 HETATM 37 C C4D BLA . . . D 2 40.63 -34.851 18.147 1 160.51 ? C4D BLA 900 B 1 HETATM 38 C CMD BLA . . . D 2 39.206 -33.743 21.355 1 159.2 ? CMD BLA 900 B 1 HETATM 39 C CAD BLA . . . D 2 38.749 -36.175 19.546 1 145.97 ? CAD BLA 900 B 1 HETATM 40 C CBD BLA . . . D 2 37.294 -35.838 19.231 1 143.09 ? CBD BLA 900 B 1 HETATM 41 C CGD BLA . . . D 2 36.414 -37.019 19.652 1 144.28 ? CGD BLA 900 B 1 HETATM 42 O O1D BLA . . . D 2 35.393 -36.758 20.318 1 146.28 ? O1D BLA 900 B 1 HETATM 43 O O2D BLA . . . D 2 36.796 -38.164 19.334 1 143.48 ? O2D BLA 900 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #