data_4S2J
#
_model_server_result.job_id            xnGDCqBjzuqM8ItZUttrdQ 
_model_server_result.datetime_utc      '2024-11-23 01:46:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4s2j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    4S2J 
#
_exptl.entry_id    4S2J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.26 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4S2J 
_cell.length_a            64.05 
_cell.length_b            108.1 
_cell.length_c            162.81 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4S2J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
PISA monomeric 1 software_defined_assembly 4 
PISA monomeric 1 software_defined_assembly 5 
PISA monomeric 1 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,H,I,L 1 1 
B,C,F,G,J,K 2 1 
A,E,I 3 1 
B,F,J 4 1 
C,G,K 5 1 
D,H,L 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 70 A SER 70 1_555 E CAN NXL . A NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 B OG SER 70 B SER 70 1_555 F CAN NXL . B NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale3 C OG SER 70 C SER 70 1_555 G CAN NXL . C NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 D OG SER 70 D SER 70 1_555 H CAN NXL . D NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C7 H13 N3 O6 S' 
_chem_comp.formula_weight    267.26 
_chem_comp.id                NXL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'avibactam, bound form;NXL104, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAK CAO NXL sing 224 n n 
CAJ CAO NXL sing 225 n n 
CAJ N NXL sing 226 n n 
OAL SAR NXL sing 227 n n 
CAO CAH NXL sing 228 n n 
CAN N NXL sing 229 n n 
CAN OAC NXL doub 230 n n 
OAG SAR NXL doub 231 n n 
N CA NXL sing 232 n n 
SAR OAE NXL doub 233 n n 
SAR OAD NXL sing 234 n n 
O C NXL doub 235 n n 
CAH CB NXL sing 236 n n 
CA C NXL sing 237 n n 
CA CB NXL sing 238 n n 
C NAA NXL sing 239 n n 
NAK OAL NXL sing 240 n n 
CAN H1 NXL sing 241 n n 
CAJ H2 NXL sing 242 n n 
CAJ H3 NXL sing 243 n n 
CA H4 NXL sing 244 n n 
NAA H5 NXL sing 245 n n 
NAA H6 NXL sing 246 n n 
CB H7 NXL sing 247 n n 
CB H8 NXL sing 248 n n 
CAH H9 NXL sing 249 n n 
CAH H10 NXL sing 250 n n 
CAO H11 NXL sing 251 n n 
NAK H12 NXL sing 252 n n 
OAD H13 NXL sing 253 n n 
#
_atom_sites.entry_id                     4S2J 
_atom_sites.fract_transf_matrix[1][1]    0.015613 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009251 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006142 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NXL A 1 301 301 NXL NXL . 
F 2 NXL B 1 301 301 NXL NXL . 
G 2 NXL C 1 301 301 NXL NXL . 
H 2 NXL D 1 301 301 NXL NXL . 
I 3 HOH A 1 401 401 HOH HOH . 
I 3 HOH A 2 402 402 HOH HOH . 
I 3 HOH A 3 403 403 HOH HOH . 
I 3 HOH A 4 404 404 HOH HOH . 
I 3 HOH A 5 405 405 HOH HOH . 
I 3 HOH A 6 406 406 HOH HOH . 
I 3 HOH A 7 407 407 HOH HOH . 
I 3 HOH A 8 408 408 HOH HOH . 
I 3 HOH A 9 409 409 HOH HOH . 
I 3 HOH A 10 410 410 HOH HOH . 
I 3 HOH A 11 411 411 HOH HOH . 
I 3 HOH A 12 412 412 HOH HOH . 
I 3 HOH A 13 413 413 HOH HOH . 
I 3 HOH A 14 414 414 HOH HOH . 
I 3 HOH A 15 415 415 HOH HOH . 
I 3 HOH A 16 416 416 HOH HOH . 
I 3 HOH A 17 417 417 HOH HOH . 
I 3 HOH A 18 418 418 HOH HOH . 
I 3 HOH A 19 419 419 HOH HOH . 
I 3 HOH A 20 420 420 HOH HOH . 
I 3 HOH A 21 421 421 HOH HOH . 
I 3 HOH A 22 422 422 HOH HOH . 
I 3 HOH A 23 423 423 HOH HOH . 
I 3 HOH A 24 424 424 HOH HOH . 
I 3 HOH A 25 425 425 HOH HOH . 
I 3 HOH A 26 426 426 HOH HOH . 
I 3 HOH A 27 427 428 HOH HOH . 
I 3 HOH A 28 428 429 HOH HOH . 
I 3 HOH A 29 429 430 HOH HOH . 
I 3 HOH A 30 430 431 HOH HOH . 
I 3 HOH A 31 431 432 HOH HOH . 
I 3 HOH A 32 432 433 HOH HOH . 
I 3 HOH A 33 433 434 HOH HOH . 
I 3 HOH A 34 434 435 HOH HOH . 
I 3 HOH A 35 435 436 HOH HOH . 
I 3 HOH A 36 436 437 HOH HOH . 
I 3 HOH A 37 437 438 HOH HOH . 
I 3 HOH A 38 438 439 HOH HOH . 
I 3 HOH A 39 439 440 HOH HOH . 
I 3 HOH A 40 440 441 HOH HOH . 
I 3 HOH A 41 441 442 HOH HOH . 
I 3 HOH A 42 442 443 HOH HOH . 
I 3 HOH A 43 443 444 HOH HOH . 
I 3 HOH A 44 444 445 HOH HOH . 
I 3 HOH A 45 445 446 HOH HOH . 
I 3 HOH A 46 446 449 HOH HOH . 
I 3 HOH A 47 447 450 HOH HOH . 
I 3 HOH A 48 448 451 HOH HOH . 
I 3 HOH A 49 449 452 HOH HOH . 
I 3 HOH A 50 450 453 HOH HOH . 
I 3 HOH A 51 451 454 HOH HOH . 
I 3 HOH A 52 452 408 HOH HOH . 
J 3 HOH B 1 401 401 HOH HOH . 
J 3 HOH B 2 402 402 HOH HOH . 
J 3 HOH B 3 403 403 HOH HOH . 
J 3 HOH B 4 404 404 HOH HOH . 
J 3 HOH B 5 405 405 HOH HOH . 
J 3 HOH B 6 406 406 HOH HOH . 
J 3 HOH B 7 407 407 HOH HOH . 
J 3 HOH B 8 408 408 HOH HOH . 
J 3 HOH B 9 409 409 HOH HOH . 
J 3 HOH B 10 410 410 HOH HOH . 
J 3 HOH B 11 411 411 HOH HOH . 
J 3 HOH B 12 412 412 HOH HOH . 
J 3 HOH B 13 413 413 HOH HOH . 
J 3 HOH B 14 414 414 HOH HOH . 
J 3 HOH B 15 415 415 HOH HOH . 
J 3 HOH B 16 416 416 HOH HOH . 
J 3 HOH B 17 417 417 HOH HOH . 
J 3 HOH B 18 418 418 HOH HOH . 
J 3 HOH B 19 419 419 HOH HOH . 
J 3 HOH B 20 420 420 HOH HOH . 
J 3 HOH B 21 421 421 HOH HOH . 
J 3 HOH B 22 422 422 HOH HOH . 
J 3 HOH B 23 423 423 HOH HOH . 
J 3 HOH B 24 424 424 HOH HOH . 
J 3 HOH B 25 425 425 HOH HOH . 
J 3 HOH B 26 426 426 HOH HOH . 
J 3 HOH B 27 427 427 HOH HOH . 
J 3 HOH B 28 428 428 HOH HOH . 
J 3 HOH B 29 429 429 HOH HOH . 
J 3 HOH B 30 430 430 HOH HOH . 
J 3 HOH B 31 431 431 HOH HOH . 
J 3 HOH B 32 432 432 HOH HOH . 
J 3 HOH B 33 433 433 HOH HOH . 
J 3 HOH B 34 434 434 HOH HOH . 
J 3 HOH B 35 435 435 HOH HOH . 
J 3 HOH B 36 436 436 HOH HOH . 
J 3 HOH B 37 437 437 HOH HOH . 
J 3 HOH B 38 438 438 HOH HOH . 
J 3 HOH B 39 439 439 HOH HOH . 
J 3 HOH B 40 440 440 HOH HOH . 
J 3 HOH B 41 441 441 HOH HOH . 
J 3 HOH B 42 442 442 HOH HOH . 
J 3 HOH B 43 443 443 HOH HOH . 
J 3 HOH B 44 444 444 HOH HOH . 
J 3 HOH B 45 445 445 HOH HOH . 
J 3 HOH B 46 446 446 HOH HOH . 
K 3 HOH C 1 401 401 HOH HOH . 
K 3 HOH C 2 402 402 HOH HOH . 
K 3 HOH C 3 403 403 HOH HOH . 
K 3 HOH C 4 404 404 HOH HOH . 
K 3 HOH C 5 405 405 HOH HOH . 
K 3 HOH C 6 406 406 HOH HOH . 
K 3 HOH C 7 407 407 HOH HOH . 
K 3 HOH C 8 408 408 HOH HOH . 
K 3 HOH C 9 409 409 HOH HOH . 
K 3 HOH C 10 410 410 HOH HOH . 
K 3 HOH C 11 411 411 HOH HOH . 
K 3 HOH C 12 412 412 HOH HOH . 
K 3 HOH C 13 413 413 HOH HOH . 
K 3 HOH C 14 414 414 HOH HOH . 
K 3 HOH C 15 415 415 HOH HOH . 
K 3 HOH C 16 416 416 HOH HOH . 
K 3 HOH C 17 417 417 HOH HOH . 
K 3 HOH C 18 418 418 HOH HOH . 
K 3 HOH C 19 419 419 HOH HOH . 
K 3 HOH C 20 420 420 HOH HOH . 
K 3 HOH C 21 421 421 HOH HOH . 
K 3 HOH C 22 422 422 HOH HOH . 
K 3 HOH C 23 423 423 HOH HOH . 
K 3 HOH C 24 424 424 HOH HOH . 
K 3 HOH C 25 425 425 HOH HOH . 
K 3 HOH C 26 426 426 HOH HOH . 
K 3 HOH C 27 427 427 HOH HOH . 
K 3 HOH C 28 428 428 HOH HOH . 
K 3 HOH C 29 429 429 HOH HOH . 
K 3 HOH C 30 430 430 HOH HOH . 
K 3 HOH C 31 431 431 HOH HOH . 
K 3 HOH C 32 432 432 HOH HOH . 
K 3 HOH C 33 433 433 HOH HOH . 
K 3 HOH C 34 434 434 HOH HOH . 
K 3 HOH C 35 435 435 HOH HOH . 
K 3 HOH C 36 436 436 HOH HOH . 
K 3 HOH C 37 437 437 HOH HOH . 
K 3 HOH C 38 438 438 HOH HOH . 
K 3 HOH C 39 439 439 HOH HOH . 
K 3 HOH C 40 440 440 HOH HOH . 
K 3 HOH C 41 441 441 HOH HOH . 
L 3 HOH D 1 401 427 HOH HOH . 
L 3 HOH D 2 402 447 HOH HOH . 
L 3 HOH D 3 403 448 HOH HOH . 
L 3 HOH D 4 404 401 HOH HOH . 
L 3 HOH D 5 405 402 HOH HOH . 
L 3 HOH D 6 406 403 HOH HOH . 
L 3 HOH D 7 407 404 HOH HOH . 
L 3 HOH D 8 408 405 HOH HOH . 
L 3 HOH D 9 409 406 HOH HOH . 
L 3 HOH D 10 410 407 HOH HOH . 
L 3 HOH D 11 411 409 HOH HOH . 
L 3 HOH D 12 412 410 HOH HOH . 
L 3 HOH D 13 413 411 HOH HOH . 
L 3 HOH D 14 414 412 HOH HOH . 
L 3 HOH D 15 415 413 HOH HOH . 
L 3 HOH D 16 416 414 HOH HOH . 
L 3 HOH D 17 417 415 HOH HOH . 
L 3 HOH D 18 418 416 HOH HOH . 
L 3 HOH D 19 419 417 HOH HOH . 
L 3 HOH D 20 420 418 HOH HOH . 
L 3 HOH D 21 421 419 HOH HOH . 
L 3 HOH D 22 422 420 HOH HOH . 
L 3 HOH D 23 423 421 HOH HOH . 
L 3 HOH D 24 424 422 HOH HOH . 
L 3 HOH D 25 425 423 HOH HOH . 
L 3 HOH D 26 426 424 HOH HOH . 
L 3 HOH D 27 427 425 HOH HOH . 
L 3 HOH D 28 428 426 HOH HOH . 
L 3 HOH D 29 429 427 HOH HOH . 
L 3 HOH D 30 430 428 HOH HOH . 
L 3 HOH D 31 431 429 HOH HOH . 
L 3 HOH D 32 432 430 HOH HOH . 
L 3 HOH D 33 433 431 HOH HOH . 
L 3 HOH D 34 434 432 HOH HOH . 
L 3 HOH D 35 435 433 HOH HOH . 
L 3 HOH D 36 436 434 HOH HOH . 
L 3 HOH D 37 437 435 HOH HOH . 
L 3 HOH D 38 438 436 HOH HOH . 
L 3 HOH D 39 439 437 HOH HOH . 
L 3 HOH D 40 440 438 HOH HOH . 
L 3 HOH D 41 441 439 HOH HOH . 
L 3 HOH D 42 442 440 HOH HOH . 
L 3 HOH D 43 443 441 HOH HOH . 
L 3 HOH D 44 444 442 HOH HOH . 
L 3 HOH D 45 445 443 HOH HOH . 
L 3 HOH D 46 446 444 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAC NXL . . . F 2 18.279 -8.501 -25.107 1 37.57 ? OAC NXL 301 B 1 
HETATM 2 C CAN NXL . . . F 2 19.225 -7.793 -24.817 1 36.47 ? CAN NXL 301 B 1 
HETATM 3 N N NXL . . . F 2 20.427 -7.973 -25.27 1 36.26 ? N NXL 301 B 1 
HETATM 4 C CAJ NXL . . . F 2 21.494 -7.039 -24.893 1 33.95 ? CAJ NXL 301 B 1 
HETATM 5 C CA NXL . . . F 2 20.658 -9.069 -26.146 1 36.01 ? CA NXL 301 B 1 
HETATM 6 C C NXL . . . F 2 21.776 -9.933 -25.693 1 37.23 ? C NXL 301 B 1 
HETATM 7 O O NXL . . . F 2 22.082 -10 -24.503 1 37.57 ? O NXL 301 B 1 
HETATM 8 N NAA NXL . . . F 2 22.484 -10.667 -26.636 1 43.21 ? NAA NXL 301 B 1 
HETATM 9 C CB NXL . . . F 2 20.882 -8.361 -27.469 1 34.31 ? CB NXL 301 B 1 
HETATM 10 C CAH NXL . . . F 2 21.899 -7.226 -27.403 1 34.25 ? CAH NXL 301 B 1 
HETATM 11 C CAO NXL . . . F 2 21.586 -6.296 -26.218 1 34.68 ? CAO NXL 301 B 1 
HETATM 12 N NAK NXL . . . F 2 20.393 -5.601 -26.512 1 35.28 ? NAK NXL 301 B 1 
HETATM 13 O OAL NXL . . . F 2 20.197 -5.29 -27.815 1 37.56 ? OAL NXL 301 B 1 
HETATM 14 S SAR NXL . . . F 2 18.719 -5.038 -28.101 1 43.71 ? SAR NXL 301 B 1 
HETATM 15 O OAD NXL . . . F 2 17.929 -6.233 -28.27 1 45.83 ? OAD NXL 301 B 1 
HETATM 16 O OAE NXL . . . F 2 18.539 -4.282 -29.325 1 42.77 ? OAE NXL 301 B 1 
HETATM 17 O OAG NXL . . . F 2 17.936 -4.43 -27.053 1 40.83 ? OAG NXL 301 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#