data_4SBV # _model_server_result.job_id xaQsonapy1tjJKbtJXWZQA _model_server_result.datetime_utc '2025-02-26 07:15:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4sbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":261}' # _entry.id 4SBV # _exptl.entry_id 4SBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4SBV _cell.length_a 334.3 _cell.length_b 334.3 _cell.length_c 757.5 _cell.Z_PDB 540 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4SBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 180-meric 180 'complete icosahedral assembly' 1 ? trimeric 3 'icosahedral asymmetric unit' 2 ? pentadecameric 15 'icosahedral pentamer' 3 ? octadecameric 18 'icosahedral 23 hexamer' 4 ? trimeric 3 'icosahedral asymmetric unit, std point frame' 5 ? 90-meric 90 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 (1-60) A,B,C,D,E,F,G,H,I 2 1 A,B,C,D,E,F,G,H,I 3 (1-5) A,B,C,D,E,F,G,H,I 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H,I 5 P A,B,C,D,E,F,G,H,I 6 (X0)(1-10,26-30) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 P 'transform to point frame' ? ? 0 -0.934172 0.356823 0 0.356823 0.934172 -1 0 0 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.5 -0.645497 0.577351 0.866025 0.372678 -0.333333 0 0.666667 0.745356 0 0 0 3 'point symmetry operation' ? ? -0.309017 -0.17841 0.934173 0.755762 -0.642349 0.127323 0.57735 0.745357 0.333332 0 0 0 4 'point symmetry operation' ? ? -0.309017 0.755762 0.57735 -0.17841 -0.642349 0.745357 0.934173 0.127323 0.333332 0 0 0 5 'point symmetry operation' ? ? 0.5 0.866025 0 -0.645497 0.372678 0.666667 0.577351 -0.333333 0.745356 0 0 0 6 'point symmetry operation' ? ? -1 0 0 0 -0.745355 0.666668 0 0.666668 0.745355 0 0 0 7 'point symmetry operation' ? ? -0.5 0.645497 -0.577351 -0.645497 0.166668 0.745356 0.577351 0.745356 0.333332 0 0 0 8 'point symmetry operation' ? ? 0.309017 0.17841 -0.934173 -0.17841 0.975684 0.127321 0.934173 0.127321 0.333333 0 0 0 9 'point symmetry operation' ? ? 0.309017 -0.755762 -0.57735 0.755762 0.56366 -0.333333 0.57735 -0.333333 0.745357 0 0 0 10 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0.000001 0 0.000001 1 0 0 0 11 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 0 0 12 'point symmetry operation' ? ? 0.5 -0.645497 0.577351 -0.866025 -0.372678 0.333333 0 -0.666667 -0.745356 0 0 0 13 'point symmetry operation' ? ? -0.309017 -0.17841 0.934173 -0.755762 0.642349 -0.127323 -0.577349 -0.745357 -0.333332 0 0 0 14 'point symmetry operation' ? ? -0.309017 0.755762 0.57735 0.17841 0.642349 -0.745357 -0.934172 -0.127323 -0.333332 0 0 0 15 'point symmetry operation' ? ? 0.5 0.866025 0 0.645497 -0.372678 -0.666667 -0.577351 0.333333 -0.745356 0 0 0 16 'point symmetry operation' ? ? -1 0 0 0 0.745355 -0.666668 0 -0.666668 -0.745355 0 0 0 17 'point symmetry operation' ? ? -0.5 0.645497 -0.577351 0.645497 -0.166668 -0.745356 -0.577351 -0.745356 -0.333332 0 0 0 18 'point symmetry operation' ? ? 0.309017 0.17841 -0.934173 0.17841 -0.975684 -0.127321 -0.934172 -0.127321 -0.333333 0 0 0 19 'point symmetry operation' ? ? 0.309017 -0.755762 -0.57735 -0.755762 -0.56366 0.333333 -0.577349 0.333333 -0.745357 0 0 0 20 'point symmetry operation' ? ? -0.5 -0.866025 0 -0.866025 0.5 -0.000001 0 -0.000001 -1 0 0 0 21 'point symmetry operation' ? ? 0 -0.934172 0.356823 0.356823 -0.333334 -0.872677 0.934172 0.127323 0.333334 0 0 0 22 'point symmetry operation' ? ? -0.809017 -0.110264 0.57735 -0.110264 -0.93634 -0.333332 0.57735 -0.333332 0.745357 0 0 0 23 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0.000001 0 0.000001 1 0 0 0 24 'point symmetry operation' ? ? 0.5 0.645497 -0.577351 -0.866025 0.372678 -0.333333 0 0.666667 0.745356 0 0 0 25 'point symmetry operation' ? ? 0.809017 -0.467087 -0.356822 -0.110264 0.475684 -0.872678 0.57735 0.745356 0.333333 0 0 0 26 'point symmetry operation' ? ? 0 0.934172 -0.356823 -0.356823 -0.333334 -0.872677 -0.934172 0.127323 0.333334 0 0 0 27 'point symmetry operation' ? ? 0.809017 0.110264 -0.57735 -0.467087 -0.475684 -0.745356 -0.356822 0.872678 -0.333333 0 0 0 28 'point symmetry operation' ? ? 0.5 -0.866025 0 -0.645497 -0.372678 -0.666667 0.577351 0.333333 -0.745356 0 0 0 29 'point symmetry operation' ? ? -0.5 -0.645497 0.577351 -0.645497 -0.166668 -0.745356 0.577351 -0.745356 -0.333332 0 0 0 30 'point symmetry operation' ? ? -0.809017 0.467087 0.356822 -0.467087 -0.142352 -0.872678 -0.356822 -0.872678 0.333335 0 0 0 31 'point symmetry operation' ? ? 0 0.934172 -0.356823 0.356823 0.333334 0.872677 0.934172 -0.127323 -0.333334 0 0 0 32 'point symmetry operation' ? ? 0.809017 0.110264 -0.57735 0.467087 0.475684 0.745356 0.356822 -0.872678 0.333333 0 0 0 33 'point symmetry operation' ? ? 0.5 -0.866025 0 0.645497 0.372678 0.666667 -0.577351 -0.333333 0.745356 0 0 0 34 'point symmetry operation' ? ? -0.5 -0.645497 0.577351 0.645497 0.166668 0.745356 -0.577351 0.745356 0.333332 0 0 0 35 'point symmetry operation' ? ? -0.809017 0.467087 0.356822 0.467087 0.142352 0.872678 0.356822 0.872678 -0.333335 0 0 0 36 'point symmetry operation' ? ? 0 -0.934172 0.356823 -0.356823 0.333334 0.872677 -0.934172 -0.127323 -0.333334 0 0 0 37 'point symmetry operation' ? ? -0.809017 -0.110264 0.57735 0.110264 0.93634 0.333332 -0.57735 0.333332 -0.745357 0 0 0 38 'point symmetry operation' ? ? -0.5 0.866025 0 0.866025 0.5 -0.000001 0 -0.000001 -1 0 0 0 39 'point symmetry operation' ? ? 0.5 0.645497 -0.577351 0.866025 -0.372678 0.333333 0 -0.666667 -0.745356 0 0 0 40 'point symmetry operation' ? ? 0.809017 -0.467087 -0.356822 0.110264 -0.475684 0.872678 -0.57735 -0.745356 -0.333333 0 0 0 41 'point symmetry operation' ? ? 0 0.356823 0.934172 -0.934172 -0.333334 0.127323 0.356823 -0.872677 0.333334 0 0 0 42 'point symmetry operation' ? ? 0.309017 0.755762 0.57735 -0.755762 0.56366 -0.333333 -0.577349 -0.333333 0.745357 0 0 0 43 'point symmetry operation' ? ? 0.809017 0.467087 0.356822 0.110264 0.475684 -0.872678 -0.57735 0.745356 0.333333 0 0 0 44 'point symmetry operation' ? ? 0.809017 -0.110264 0.57735 0.467087 -0.475684 -0.745356 0.356822 0.872678 -0.333333 0 0 0 45 'point symmetry operation' ? ? 0.309017 -0.17841 0.934173 -0.17841 -0.975684 -0.127321 0.934173 -0.127321 -0.333333 0 0 0 46 'point symmetry operation' ? ? 0 0.356823 0.934172 0.934172 0.333334 -0.127323 -0.356823 0.872677 -0.333334 0 0 0 47 'point symmetry operation' ? ? 0.309017 0.755762 0.57735 0.755762 -0.56366 0.333333 0.57735 0.333333 -0.745357 0 0 0 48 'point symmetry operation' ? ? 0.809017 0.467087 0.356822 -0.110264 -0.475684 0.872678 0.57735 -0.745356 -0.333333 0 0 0 49 'point symmetry operation' ? ? 0.809017 -0.110264 0.57735 -0.467087 0.475684 0.745356 -0.356822 -0.872678 0.333333 0 0 0 50 'point symmetry operation' ? ? 0.309017 -0.17841 0.934173 0.17841 0.975684 0.127321 -0.934172 0.127321 0.333333 0 0 0 51 'point symmetry operation' ? ? 0 -0.356823 -0.934172 -0.934172 0.333334 -0.127323 0.356823 0.872677 -0.333334 0 0 0 52 'point symmetry operation' ? ? -0.309017 -0.755762 -0.57735 -0.17841 0.642349 -0.745357 0.934173 -0.127323 -0.333332 0 0 0 53 'point symmetry operation' ? ? -0.809017 -0.467087 -0.356822 0.467087 -0.142352 -0.872678 0.356822 -0.872678 0.333335 0 0 0 54 'point symmetry operation' ? ? -0.809017 0.110264 -0.57735 0.110264 -0.93634 -0.333332 -0.57735 -0.333332 0.745357 0 0 0 55 'point symmetry operation' ? ? -0.309017 0.17841 -0.934173 -0.755762 -0.642349 0.127323 -0.577349 0.745357 0.333332 0 0 0 56 'point symmetry operation' ? ? 0 -0.356823 -0.934172 0.934172 -0.333334 0.127323 -0.356823 -0.872677 0.333334 0 0 0 57 'point symmetry operation' ? ? -0.309017 -0.755762 -0.57735 0.17841 -0.642349 0.745357 -0.934172 0.127323 0.333332 0 0 0 58 'point symmetry operation' ? ? -0.809017 -0.467087 -0.356822 -0.467087 0.142352 0.872678 -0.356822 0.872678 -0.333335 0 0 0 59 'point symmetry operation' ? ? -0.809017 0.110264 -0.57735 -0.110264 0.93634 0.333332 0.57735 0.333332 -0.745357 0 0 0 60 'point symmetry operation' ? ? -0.309017 0.17841 -0.934173 0.755762 0.642349 -0.127323 0.57735 -0.745357 -0.333332 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 169 A CYS 169 1_555 A SG CYS 176 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? disulf ? disulf2 B SG CYS 169 B CYS 169 1_555 B SG CYS 176 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf3 C SG CYS 169 C CYS 169 1_555 C SG CYS 176 C CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc1 A OD1 ASP 138 A ASP 138 1_555 D CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 A OD1 ASP 141 A ASP 141 1_555 D CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 A O PHE 199 A PHE 199 1_555 F CA CA . C CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc4 A OD1 ASN 259 A ASN 259 1_555 F CA CA . C CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc5 A O LEU 260 A LEU 260 1_555 F CA CA . C CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 D CA CA . A CA 261 1_555 B O PHE 199 B PHE 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc7 D CA CA . A CA 261 1_555 B OD1 ASN 259 B ASN 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc8 D CA CA . A CA 261 1_555 B O LEU 260 B LEU 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc9 B OD1 ASP 138 B ASP 138 1_555 E CA CA . B CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? metalc ? metalc10 B OD1 ASP 141 B ASP 141 1_555 E CA CA . B CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc11 B OD2 ASP 141 B ASP 141 1_555 E CA CA . B CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc12 E CA CA . B CA 261 1_555 C O PHE 199 C PHE 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc13 E CA CA . B CA 261 1_555 C OD1 ASN 259 C ASN 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc14 E CA CA . B CA 261 1_555 C O LEU 260 C LEU 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc15 C OD1 ASP 138 C ASP 138 1_555 F CA CA . C CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc16 C OD1 ASP 141 C ASP 141 1_555 F CA CA . C CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.154 ? metalc ? metalc17 C OD2 ASP 141 C ASP 141 1_555 F CA CA . C CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4SBV _atom_sites.fract_transf_matrix[1][1] 0.002991 _atom_sites.fract_transf_matrix[1][2] 0.001727 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CA A 1 261 1 CA CA . E 2 CA B 1 261 1 CA CA . F 2 CA C 1 261 1 CA CA . G 3 HOH A 1 262 2 HOH HOH . G 3 HOH A 2 263 4 HOH HOH . G 3 HOH A 3 264 8 HOH HOH . G 3 HOH A 4 265 9 HOH HOH . G 3 HOH A 5 266 10 HOH HOH . G 3 HOH A 6 267 12 HOH HOH . G 3 HOH A 7 268 13 HOH HOH . G 3 HOH A 8 269 14 HOH HOH . G 3 HOH A 9 270 15 HOH HOH . G 3 HOH A 10 271 16 HOH HOH . G 3 HOH A 11 272 17 HOH HOH . G 3 HOH A 12 273 18 HOH HOH . G 3 HOH A 13 274 19 HOH HOH . G 3 HOH A 14 275 20 HOH HOH . G 3 HOH A 15 276 21 HOH HOH . H 3 HOH B 1 262 2 HOH HOH . H 3 HOH B 2 263 3 HOH HOH . H 3 HOH B 3 264 4 HOH HOH . H 3 HOH B 4 265 5 HOH HOH . H 3 HOH B 5 266 6 HOH HOH . H 3 HOH B 6 267 7 HOH HOH . H 3 HOH B 7 268 9 HOH HOH . H 3 HOH B 8 269 10 HOH HOH . H 3 HOH B 9 270 11 HOH HOH . H 3 HOH B 10 271 12 HOH HOH . I 3 HOH C 1 262 8 HOH HOH . I 3 HOH C 2 263 2 HOH HOH . I 3 HOH C 3 264 3 HOH HOH . I 3 HOH C 4 265 4 HOH HOH . I 3 HOH C 5 266 5 HOH HOH . I 3 HOH C 6 267 6 HOH HOH . I 3 HOH C 7 268 7 HOH HOH . I 3 HOH C 8 269 8 HOH HOH . I 3 HOH C 9 270 9 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 12.452 _atom_site.Cartn_y 44.514 _atom_site.Cartn_z 123.899 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 261 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #