data_4THI
#
_model_server_result.job_id            T7w544mhkPvZPWCe6DzHOw 
_model_server_result.datetime_utc      '2024-11-13 14:15:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4thi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":371}' 
#
_entry.id    4THI 
#
_exptl.entry_id    4THI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              123.156 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,5-DIMETHYL-PYRIMIDIN-4-YLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4THI 
_cell.length_a            86.7 
_cell.length_b            119.3 
_cell.length_c            37.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4THI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             105 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              113 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C6' 
_struct_conn.ptnr2_label_comp_id            PYD 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             PYD 
_struct_conn.ptnr2_auth_seq_id              371 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.823 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C6 H9 N3' 
_chem_comp.formula_weight    123.156 
_chem_comp.id                PYD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,5-DIMETHYL-PYRIMIDIN-4-YLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1' C2' PYD doub 277 n y 
N1' C6' PYD sing 278 n y 
C2' CM2 PYD sing 279 n n 
C2' N3' PYD sing 280 n y 
CM2 HM21 PYD sing 281 n n 
CM2 HM22 PYD sing 282 n n 
CM2 HM23 PYD sing 283 n n 
N3' C4' PYD doub 284 n y 
C4' N4' PYD sing 285 n n 
C4' C5' PYD sing 286 n y 
N4' HN41 PYD sing 287 n n 
N4' HN42 PYD sing 288 n n 
C5' C6' PYD doub 289 n y 
C5' C7' PYD sing 290 n n 
C6' HC6' PYD sing 291 n n 
C7' HC71 PYD sing 292 n n 
C7' HC72 PYD sing 293 n n 
C7' HC73 PYD sing 294 n n 
#
_atom_sites.entry_id                     4THI 
_atom_sites.fract_transf_matrix[1][1]    0.011534 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008382 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02681 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 372 372 SO4 SO4 . 
C 3 PYD A 1 371 371 PYD PYD . 
D 4 HOH A 1 373 1 HOH HOH . 
D 4 HOH A 2 374 2 HOH HOH . 
D 4 HOH A 3 375 3 HOH HOH . 
D 4 HOH A 4 376 4 HOH HOH . 
D 4 HOH A 5 377 5 HOH HOH . 
D 4 HOH A 6 378 6 HOH HOH . 
D 4 HOH A 7 379 7 HOH HOH . 
D 4 HOH A 8 380 8 HOH HOH . 
D 4 HOH A 9 381 9 HOH HOH . 
D 4 HOH A 10 382 10 HOH HOH . 
D 4 HOH A 11 383 11 HOH HOH . 
D 4 HOH A 12 384 12 HOH HOH . 
D 4 HOH A 13 385 13 HOH HOH . 
D 4 HOH A 14 386 14 HOH HOH . 
D 4 HOH A 15 387 15 HOH HOH . 
D 4 HOH A 16 388 16 HOH HOH . 
D 4 HOH A 17 389 17 HOH HOH . 
D 4 HOH A 18 390 18 HOH HOH . 
D 4 HOH A 19 391 19 HOH HOH . 
D 4 HOH A 20 392 20 HOH HOH . 
D 4 HOH A 21 393 21 HOH HOH . 
D 4 HOH A 22 394 22 HOH HOH . 
D 4 HOH A 23 395 23 HOH HOH . 
D 4 HOH A 24 396 24 HOH HOH . 
D 4 HOH A 25 397 25 HOH HOH . 
D 4 HOH A 26 398 26 HOH HOH . 
D 4 HOH A 27 399 27 HOH HOH . 
D 4 HOH A 28 400 28 HOH HOH . 
D 4 HOH A 29 401 29 HOH HOH . 
D 4 HOH A 30 402 30 HOH HOH . 
D 4 HOH A 31 403 31 HOH HOH . 
D 4 HOH A 32 404 32 HOH HOH . 
D 4 HOH A 33 405 33 HOH HOH . 
D 4 HOH A 34 406 34 HOH HOH . 
D 4 HOH A 35 407 35 HOH HOH . 
D 4 HOH A 36 408 36 HOH HOH . 
D 4 HOH A 37 409 37 HOH HOH . 
D 4 HOH A 38 410 38 HOH HOH . 
D 4 HOH A 39 411 39 HOH HOH . 
D 4 HOH A 40 412 40 HOH HOH . 
D 4 HOH A 41 413 41 HOH HOH . 
D 4 HOH A 42 414 42 HOH HOH . 
D 4 HOH A 43 415 43 HOH HOH . 
D 4 HOH A 44 416 44 HOH HOH . 
D 4 HOH A 45 417 45 HOH HOH . 
D 4 HOH A 46 418 46 HOH HOH . 
D 4 HOH A 47 419 47 HOH HOH . 
D 4 HOH A 48 420 48 HOH HOH . 
D 4 HOH A 49 421 49 HOH HOH . 
D 4 HOH A 50 422 50 HOH HOH . 
D 4 HOH A 51 423 51 HOH HOH . 
D 4 HOH A 52 424 52 HOH HOH . 
D 4 HOH A 53 425 53 HOH HOH . 
D 4 HOH A 54 426 54 HOH HOH . 
D 4 HOH A 55 427 55 HOH HOH . 
D 4 HOH A 56 428 56 HOH HOH . 
D 4 HOH A 57 429 57 HOH HOH . 
D 4 HOH A 58 430 58 HOH HOH . 
D 4 HOH A 59 431 59 HOH HOH . 
D 4 HOH A 60 432 60 HOH HOH . 
D 4 HOH A 61 433 61 HOH HOH . 
D 4 HOH A 62 434 62 HOH HOH . 
D 4 HOH A 63 435 63 HOH HOH . 
D 4 HOH A 64 436 64 HOH HOH . 
D 4 HOH A 65 437 65 HOH HOH . 
D 4 HOH A 66 438 66 HOH HOH . 
D 4 HOH A 67 439 67 HOH HOH . 
D 4 HOH A 68 440 68 HOH HOH . 
D 4 HOH A 69 441 69 HOH HOH . 
D 4 HOH A 70 442 70 HOH HOH . 
D 4 HOH A 71 443 71 HOH HOH . 
D 4 HOH A 72 444 72 HOH HOH . 
D 4 HOH A 73 445 73 HOH HOH . 
D 4 HOH A 74 446 74 HOH HOH . 
D 4 HOH A 75 447 75 HOH HOH . 
D 4 HOH A 76 448 76 HOH HOH . 
D 4 HOH A 77 449 77 HOH HOH . 
D 4 HOH A 78 450 78 HOH HOH . 
D 4 HOH A 79 451 79 HOH HOH . 
D 4 HOH A 80 452 80 HOH HOH . 
D 4 HOH A 81 453 81 HOH HOH . 
D 4 HOH A 82 454 82 HOH HOH . 
D 4 HOH A 83 455 83 HOH HOH . 
D 4 HOH A 84 456 84 HOH HOH . 
D 4 HOH A 85 457 85 HOH HOH . 
D 4 HOH A 86 458 86 HOH HOH . 
D 4 HOH A 87 459 87 HOH HOH . 
D 4 HOH A 88 460 88 HOH HOH . 
D 4 HOH A 89 461 89 HOH HOH . 
D 4 HOH A 90 462 90 HOH HOH . 
D 4 HOH A 91 463 91 HOH HOH . 
D 4 HOH A 92 464 92 HOH HOH . 
D 4 HOH A 93 465 93 HOH HOH . 
D 4 HOH A 94 466 94 HOH HOH . 
D 4 HOH A 95 467 95 HOH HOH . 
D 4 HOH A 96 468 96 HOH HOH . 
D 4 HOH A 97 469 97 HOH HOH . 
D 4 HOH A 98 470 98 HOH HOH . 
D 4 HOH A 99 471 99 HOH HOH . 
D 4 HOH A 100 472 100 HOH HOH . 
D 4 HOH A 101 473 101 HOH HOH . 
D 4 HOH A 102 474 102 HOH HOH . 
D 4 HOH A 103 475 103 HOH HOH . 
D 4 HOH A 104 476 104 HOH HOH . 
D 4 HOH A 105 477 105 HOH HOH . 
D 4 HOH A 106 478 106 HOH HOH . 
D 4 HOH A 107 479 107 HOH HOH . 
D 4 HOH A 108 480 108 HOH HOH . 
D 4 HOH A 109 481 109 HOH HOH . 
D 4 HOH A 110 482 110 HOH HOH . 
D 4 HOH A 111 483 111 HOH HOH . 
D 4 HOH A 112 484 112 HOH HOH . 
D 4 HOH A 113 485 113 HOH HOH . 
D 4 HOH A 114 486 114 HOH HOH . 
D 4 HOH A 115 487 115 HOH HOH . 
D 4 HOH A 116 488 116 HOH HOH . 
D 4 HOH A 117 489 117 HOH HOH . 
D 4 HOH A 118 490 118 HOH HOH . 
D 4 HOH A 119 491 119 HOH HOH . 
D 4 HOH A 120 492 120 HOH HOH . 
D 4 HOH A 121 493 121 HOH HOH . 
D 4 HOH A 122 494 122 HOH HOH . 
D 4 HOH A 123 495 123 HOH HOH . 
D 4 HOH A 124 496 124 HOH HOH . 
D 4 HOH A 125 497 125 HOH HOH . 
D 4 HOH A 126 498 126 HOH HOH . 
D 4 HOH A 127 499 127 HOH HOH . 
D 4 HOH A 128 500 128 HOH HOH . 
D 4 HOH A 129 501 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1' PYD . . . C 3 14.689 27.263 5.358 1 20.84 ? N1' PYD 371 A 1 
HETATM 2 C C2' PYD . . . C 3 14.884 27.868 4.158 1 20 ? C2' PYD 371 A 1 
HETATM 3 C CM2 PYD . . . C 3 14.275 29.185 3.979 1 20.32 ? CM2 PYD 371 A 1 
HETATM 4 N N3' PYD . . . C 3 15.585 27.312 3.189 1 20.72 ? N3' PYD 371 A 1 
HETATM 5 C C4' PYD . . . C 3 16.121 26.057 3.408 1 20.33 ? C4' PYD 371 A 1 
HETATM 6 N N4' PYD . . . C 3 16.802 25.536 2.428 1 20.38 ? N4' PYD 371 A 1 
HETATM 7 C C5' PYD . . . C 3 15.929 25.362 4.653 1 20.39 ? C5' PYD 371 A 1 
HETATM 8 C C6' PYD . . . C 3 15.206 26.016 5.595 1 20.66 ? C6' PYD 371 A 1 
HETATM 9 C C7' PYD . . . C 3 16.506 23.977 4.906 1 20.61 ? C7' PYD 371 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#