data_4THN # _model_server_result.job_id L6eYyir-fpu2gYuJp1ndfw _model_server_result.datetime_utc '2024-12-27 00:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4thn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 4THN # _exptl.entry_id 4THN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100 _cell.angle_gamma 90 _cell.entry_id 4THN _cell.length_a 72.3 _cell.length_b 72.7 _cell.length_c 73.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4THN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 D C1 NAG . H NAG 400 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.58 ? covale ? covale2 C C CHG 1 I CHG 1 1_555 C N ARG 2 I ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale3 C C ARG 2 I ARG 2 1_555 C N NAL 3 I NAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 C C PRO 21 I PRO 21 1_555 C N AIB 22 I AIB 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale5 C C AIB 22 I AIB 22 1_555 C N AIB 23 I AIB 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C AIB 23 I AIB 23 1_555 C N TYR 24 I TYR 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 C C TYR 24 I TYR 24 1_555 C N ALC 25 I ALC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 C C ALC 25 I ALC 25 1_555 C N DGL 26 I DGL 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4THN _atom_sites.fract_transf_matrix[1][1] 0.013831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002439 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 400 400 NAG NAG . E 5 HOH L 1 416 416 HOH HOH . E 5 HOH L 2 421 421 HOH HOH . E 5 HOH L 3 423 423 HOH HOH . E 5 HOH L 4 425 425 HOH HOH . E 5 HOH L 5 442 442 HOH HOH . E 5 HOH L 6 449 449 HOH HOH . E 5 HOH L 7 459 459 HOH HOH . E 5 HOH L 8 463 463 HOH HOH . E 5 HOH L 9 464 464 HOH HOH . F 5 HOH H 1 401 401 HOH HOH . F 5 HOH H 2 402 402 HOH HOH . F 5 HOH H 3 403 403 HOH HOH . F 5 HOH H 4 404 404 HOH HOH . F 5 HOH H 5 405 405 HOH HOH . F 5 HOH H 6 406 406 HOH HOH . F 5 HOH H 7 407 407 HOH HOH . F 5 HOH H 8 408 408 HOH HOH . F 5 HOH H 9 409 409 HOH HOH . F 5 HOH H 10 410 410 HOH HOH . F 5 HOH H 11 411 411 HOH HOH . F 5 HOH H 12 412 412 HOH HOH . F 5 HOH H 13 413 413 HOH HOH . F 5 HOH H 14 414 414 HOH HOH . F 5 HOH H 15 415 415 HOH HOH . F 5 HOH H 16 417 417 HOH HOH . F 5 HOH H 17 418 418 HOH HOH . F 5 HOH H 18 419 419 HOH HOH . F 5 HOH H 19 420 420 HOH HOH . F 5 HOH H 20 422 422 HOH HOH . F 5 HOH H 21 424 424 HOH HOH . F 5 HOH H 22 426 426 HOH HOH . F 5 HOH H 23 427 427 HOH HOH . F 5 HOH H 24 428 428 HOH HOH . F 5 HOH H 25 429 429 HOH HOH . F 5 HOH H 26 430 430 HOH HOH . F 5 HOH H 27 431 431 HOH HOH . F 5 HOH H 28 432 432 HOH HOH . F 5 HOH H 29 433 433 HOH HOH . F 5 HOH H 30 434 434 HOH HOH . F 5 HOH H 31 435 435 HOH HOH . F 5 HOH H 32 436 436 HOH HOH . F 5 HOH H 33 437 437 HOH HOH . F 5 HOH H 34 438 438 HOH HOH . F 5 HOH H 35 439 439 HOH HOH . F 5 HOH H 36 440 440 HOH HOH . F 5 HOH H 37 441 441 HOH HOH . F 5 HOH H 38 443 443 HOH HOH . F 5 HOH H 39 444 444 HOH HOH . F 5 HOH H 40 445 445 HOH HOH . F 5 HOH H 41 446 446 HOH HOH . F 5 HOH H 42 447 447 HOH HOH . F 5 HOH H 43 448 448 HOH HOH . F 5 HOH H 44 451 451 HOH HOH . F 5 HOH H 45 452 452 HOH HOH . F 5 HOH H 46 453 453 HOH HOH . F 5 HOH H 47 454 454 HOH HOH . F 5 HOH H 48 455 455 HOH HOH . F 5 HOH H 49 457 457 HOH HOH . F 5 HOH H 50 458 458 HOH HOH . F 5 HOH H 51 460 460 HOH HOH . F 5 HOH H 52 461 461 HOH HOH . F 5 HOH H 53 462 462 HOH HOH . F 5 HOH H 54 465 465 HOH HOH . F 5 HOH H 55 466 466 HOH HOH . F 5 HOH H 56 467 467 HOH HOH . F 5 HOH H 57 468 468 HOH HOH . F 5 HOH H 58 469 469 HOH HOH . F 5 HOH H 59 470 470 HOH HOH . F 5 HOH H 60 471 471 HOH HOH . F 5 HOH H 61 472 472 HOH HOH . F 5 HOH H 62 473 473 HOH HOH . F 5 HOH H 63 474 474 HOH HOH . F 5 HOH H 64 475 475 HOH HOH . F 5 HOH H 65 476 476 HOH HOH . F 5 HOH H 66 477 477 HOH HOH . F 5 HOH H 67 478 478 HOH HOH . G 5 HOH I 1 450 450 HOH HOH . G 5 HOH I 2 456 456 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 31.986 -8.26 10.862 0 55 ? C1 NAG 400 H 1 HETATM 2 C C2 NAG . . . D 4 33.049 -8.574 11.874 0 55 ? C2 NAG 400 H 1 HETATM 3 C C3 NAG . . . D 4 34.424 -7.954 11.704 0 55 ? C3 NAG 400 H 1 HETATM 4 C C4 NAG . . . D 4 34.643 -7.408 10.319 0 55 ? C4 NAG 400 H 1 HETATM 5 C C5 NAG . . . D 4 33.459 -7.223 9.342 0 55 ? C5 NAG 400 H 1 HETATM 6 C C6 NAG . . . D 4 33.757 -6.574 7.993 0 55 ? C6 NAG 400 H 1 HETATM 7 C C7 NAG . . . D 4 33.409 -10.523 13.568 0 55 ? C7 NAG 400 H 1 HETATM 8 C C8 NAG . . . D 4 33.426 -11.772 12.709 0 55 ? C8 NAG 400 H 1 HETATM 9 N N2 NAG . . . D 4 32.685 -9.488 13.012 0 55 ? N2 NAG 400 H 1 HETATM 10 O O3 NAG . . . D 4 35.589 -8.494 12.375 0 55 ? O3 NAG 400 H 1 HETATM 11 O O4 NAG . . . D 4 35.932 -6.79 9.994 0 55 ? O4 NAG 400 H 1 HETATM 12 O O5 NAG . . . D 4 32.423 -8.192 9.495 0 55 ? O5 NAG 400 H 1 HETATM 13 O O6 NAG . . . D 4 32.771 -6.344 7.026 0 55 ? O6 NAG 400 H 1 HETATM 14 O O7 NAG . . . D 4 33.004 -10.762 14.706 0 55 ? O7 NAG 400 H 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #