data_4TIM # _model_server_result.job_id G4lWWmeVf_w-l9z5EbIVOQ _model_server_result.datetime_utc '2025-07-04 18:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 4TIM # _exptl.entry_id 4TIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.057 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCERIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TIM _cell.length_a 112.59 _cell.length_b 97.29 _cell.length_c 46.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H7 O7 P' _chem_comp.formula_weight 186.057 _chem_comp.id 2PG _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCERIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 2PG sing 1 n n C1 O1 2PG doub 2 n n C1 O2 2PG sing 3 n n C2 C3 2PG sing 4 n n C2 O1P 2PG sing 5 n n C2 H2 2PG sing 6 n n C3 O3 2PG sing 7 n n C3 H31 2PG sing 8 n n C3 H32 2PG sing 9 n n P O1P 2PG sing 10 n n P O2P 2PG doub 11 n n P O3P 2PG sing 12 n n P O4P 2PG sing 13 n n O2 HO2 2PG sing 14 n n O3 H3 2PG sing 15 n n O3P HOP3 2PG sing 16 n n O4P HOP4 2PG sing 17 n n # _atom_sites.entry_id 4TIM _atom_sites.fract_transf_matrix[1][1] 0.008882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2PG B 1 300 300 2PG 2PG . D 3 HOH A 1 602 602 HOH HOH . D 3 HOH A 2 606 606 HOH HOH . D 3 HOH A 3 608 608 HOH HOH . D 3 HOH A 4 609 609 HOH HOH . D 3 HOH A 5 610 610 HOH HOH . D 3 HOH A 6 612 612 HOH HOH . D 3 HOH A 7 613 613 HOH HOH . D 3 HOH A 8 616 616 HOH HOH . D 3 HOH A 9 617 617 HOH HOH . D 3 HOH A 10 621 621 HOH HOH . D 3 HOH A 11 623 623 HOH HOH . D 3 HOH A 12 625 625 HOH HOH . D 3 HOH A 13 626 626 HOH HOH . D 3 HOH A 14 627 627 HOH HOH . D 3 HOH A 15 631 631 HOH HOH . D 3 HOH A 16 633 633 HOH HOH . D 3 HOH A 17 634 634 HOH HOH . D 3 HOH A 18 635 635 HOH HOH . D 3 HOH A 19 636 636 HOH HOH . D 3 HOH A 20 637 637 HOH HOH . D 3 HOH A 21 638 638 HOH HOH . D 3 HOH A 22 639 639 HOH HOH . D 3 HOH A 23 640 640 HOH HOH . D 3 HOH A 24 641 641 HOH HOH . D 3 HOH A 25 642 642 HOH HOH . D 3 HOH A 26 643 643 HOH HOH . D 3 HOH A 27 644 644 HOH HOH . D 3 HOH A 28 645 645 HOH HOH . D 3 HOH A 29 646 646 HOH HOH . D 3 HOH A 30 648 648 HOH HOH . D 3 HOH A 31 651 651 HOH HOH . D 3 HOH A 32 652 652 HOH HOH . D 3 HOH A 33 653 653 HOH HOH . D 3 HOH A 34 656 656 HOH HOH . D 3 HOH A 35 659 659 HOH HOH . D 3 HOH A 36 661 661 HOH HOH . D 3 HOH A 37 664 664 HOH HOH . D 3 HOH A 38 665 665 HOH HOH . D 3 HOH A 39 666 666 HOH HOH . D 3 HOH A 40 667 667 HOH HOH . D 3 HOH A 41 669 669 HOH HOH . D 3 HOH A 42 674 674 HOH HOH . D 3 HOH A 43 675 675 HOH HOH . D 3 HOH A 44 676 676 HOH HOH . D 3 HOH A 45 677 677 HOH HOH . D 3 HOH A 46 678 678 HOH HOH . D 3 HOH A 47 679 679 HOH HOH . D 3 HOH A 48 681 681 HOH HOH . D 3 HOH A 49 682 682 HOH HOH . D 3 HOH A 50 683 683 HOH HOH . D 3 HOH A 51 684 684 HOH HOH . D 3 HOH A 52 685 685 HOH HOH . D 3 HOH A 53 688 688 HOH HOH . D 3 HOH A 54 689 689 HOH HOH . D 3 HOH A 55 695 695 HOH HOH . D 3 HOH A 56 697 697 HOH HOH . D 3 HOH A 57 701 701 HOH HOH . D 3 HOH A 58 702 702 HOH HOH . D 3 HOH A 59 703 703 HOH HOH . D 3 HOH A 60 704 704 HOH HOH . D 3 HOH A 61 705 705 HOH HOH . D 3 HOH A 62 706 706 HOH HOH . D 3 HOH A 63 708 708 HOH HOH . D 3 HOH A 64 709 709 HOH HOH . D 3 HOH A 65 711 711 HOH HOH . D 3 HOH A 66 712 712 HOH HOH . D 3 HOH A 67 713 713 HOH HOH . D 3 HOH A 68 714 714 HOH HOH . D 3 HOH A 69 715 715 HOH HOH . D 3 HOH A 70 716 716 HOH HOH . D 3 HOH A 71 718 718 HOH HOH . D 3 HOH A 72 722 722 HOH HOH . D 3 HOH A 73 724 724 HOH HOH . D 3 HOH A 74 725 725 HOH HOH . D 3 HOH A 75 726 726 HOH HOH . D 3 HOH A 76 727 727 HOH HOH . D 3 HOH A 77 729 729 HOH HOH . E 3 HOH B 1 601 601 HOH HOH . E 3 HOH B 2 603 603 HOH HOH . E 3 HOH B 3 604 604 HOH HOH . E 3 HOH B 4 605 605 HOH HOH . E 3 HOH B 5 607 607 HOH HOH . E 3 HOH B 6 611 611 HOH HOH . E 3 HOH B 7 614 614 HOH HOH . E 3 HOH B 8 615 615 HOH HOH . E 3 HOH B 9 618 618 HOH HOH . E 3 HOH B 10 619 619 HOH HOH . E 3 HOH B 11 620 620 HOH HOH . E 3 HOH B 12 622 622 HOH HOH . E 3 HOH B 13 624 624 HOH HOH . E 3 HOH B 14 628 628 HOH HOH . E 3 HOH B 15 629 629 HOH HOH . E 3 HOH B 16 630 630 HOH HOH . E 3 HOH B 17 632 632 HOH HOH . E 3 HOH B 18 647 647 HOH HOH . E 3 HOH B 19 649 649 HOH HOH . E 3 HOH B 20 650 650 HOH HOH . E 3 HOH B 21 654 654 HOH HOH . E 3 HOH B 22 655 655 HOH HOH . E 3 HOH B 23 657 657 HOH HOH . E 3 HOH B 24 658 658 HOH HOH . E 3 HOH B 25 660 660 HOH HOH . E 3 HOH B 26 662 662 HOH HOH . E 3 HOH B 27 663 663 HOH HOH . E 3 HOH B 28 668 668 HOH HOH . E 3 HOH B 29 670 670 HOH HOH . E 3 HOH B 30 671 671 HOH HOH . E 3 HOH B 31 672 672 HOH HOH . E 3 HOH B 32 673 673 HOH HOH . E 3 HOH B 33 680 680 HOH HOH . E 3 HOH B 34 686 686 HOH HOH . E 3 HOH B 35 687 687 HOH HOH . E 3 HOH B 36 690 690 HOH HOH . E 3 HOH B 37 691 691 HOH HOH . E 3 HOH B 38 692 692 HOH HOH . E 3 HOH B 39 693 693 HOH HOH . E 3 HOH B 40 694 694 HOH HOH . E 3 HOH B 41 696 696 HOH HOH . E 3 HOH B 42 698 698 HOH HOH . E 3 HOH B 43 699 699 HOH HOH . E 3 HOH B 44 700 700 HOH HOH . E 3 HOH B 45 707 707 HOH HOH . E 3 HOH B 46 710 710 HOH HOH . E 3 HOH B 47 717 717 HOH HOH . E 3 HOH B 48 719 719 HOH HOH . E 3 HOH B 49 720 720 HOH HOH . E 3 HOH B 50 721 721 HOH HOH . E 3 HOH B 51 723 723 HOH HOH . E 3 HOH B 52 728 728 HOH HOH . E 3 HOH B 53 730 730 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2PG . . . C 2 46.215 15.508 -8.892 1 65.23 ? C1 2PG 300 B 1 HETATM 2 C C2 2PG . . . C 2 46.434 15.502 -10.419 1 65.69 ? C2 2PG 300 B 1 HETATM 3 C C3 2PG . . . C 2 46.711 14.036 -10.719 1 38.44 ? C3 2PG 300 B 1 HETATM 4 P P 2PG . . . C 2 47.607 16.889 -12.474 1 38.5 ? P 2PG 300 B 1 HETATM 5 O O1 2PG . . . C 2 45.064 15.204 -8.478 1 26.07 ? O1 2PG 300 B 1 HETATM 6 O O2 2PG . . . C 2 47.208 15.707 -8.129 1 66.13 ? O2 2PG 300 B 1 HETATM 7 O O3 2PG . . . C 2 46.893 13.293 -9.505 1 51.57 ? O3 2PG 300 B 1 HETATM 8 O O1P 2PG . . . C 2 47.474 16.411 -10.88 1 34.98 ? O1P 2PG 300 B 1 HETATM 9 O O2P 2PG . . . C 2 46.753 15.898 -13.27 1 43.71 ? O2P 2PG 300 B 1 HETATM 10 O O3P 2PG . . . C 2 49.095 16.886 -12.825 1 33.83 ? O3P 2PG 300 B 1 HETATM 11 O O4P 2PG . . . C 2 47.036 18.298 -12.607 1 42.36 ? O4P 2PG 300 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #