data_4TKC # _model_server_result.job_id Yn0TWAIs6ZcozKWbV1dqTA _model_server_result.datetime_utc '2025-07-01 19:34:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4TKC # _exptl.entry_id 4TKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4TKC _cell.length_a 58.42 _cell.length_b 58.42 _cell.length_c 57.732 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 57.732 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BMA _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-mannopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BMA sing 70 n n C1 O1 BMA sing 71 n n C1 O5 BMA sing 72 n n C1 H1 BMA sing 73 n n C2 C3 BMA sing 74 n n C2 O2 BMA sing 75 n n C2 H2 BMA sing 76 n n C3 C4 BMA sing 77 n n C3 O3 BMA sing 78 n n C3 H3 BMA sing 79 n n C4 C5 BMA sing 80 n n C4 O4 BMA sing 81 n n C4 H4 BMA sing 82 n n C5 C6 BMA sing 83 n n C5 O5 BMA sing 84 n n C5 H5 BMA sing 85 n n C6 O6 BMA sing 86 n n C6 H61 BMA sing 87 n n C6 H62 BMA sing 88 n n O1 HO1 BMA sing 89 n n O2 HO2 BMA sing 90 n n O3 HO3 BMA sing 91 n n O4 HO4 BMA sing 92 n n O6 HO6 BMA sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BMA DManpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BMA b-D-mannopyranose 'COMMON NAME' GMML 1 BMA b-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BMA Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4TKC _atom_sites.fract_transf_matrix[1][1] 0.017118 _atom_sites.fract_transf_matrix[1][2] 0.009883 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BMA A 1 201 201 BMA BMA . C 3 GOL A 1 202 202 GOL GOL . D 4 MAN A 1 203 203 MAN MAN . E 5 HOH A 1 301 318 HOH HOH . E 5 HOH A 2 302 521 HOH HOH . E 5 HOH A 3 303 394 HOH HOH . E 5 HOH A 4 304 381 HOH HOH . E 5 HOH A 5 305 317 HOH HOH . E 5 HOH A 6 306 324 HOH HOH . E 5 HOH A 7 307 504 HOH HOH . E 5 HOH A 8 308 447 HOH HOH . E 5 HOH A 9 309 303 HOH HOH . E 5 HOH A 10 310 401 HOH HOH . E 5 HOH A 11 311 305 HOH HOH . E 5 HOH A 12 312 338 HOH HOH . E 5 HOH A 13 313 442 HOH HOH . E 5 HOH A 14 314 387 HOH HOH . E 5 HOH A 15 315 316 HOH HOH . E 5 HOH A 16 316 306 HOH HOH . E 5 HOH A 17 317 438 HOH HOH . E 5 HOH A 18 318 339 HOH HOH . E 5 HOH A 19 319 435 HOH HOH . E 5 HOH A 20 320 326 HOH HOH . E 5 HOH A 21 321 358 HOH HOH . E 5 HOH A 22 322 409 HOH HOH . E 5 HOH A 23 323 354 HOH HOH . E 5 HOH A 24 324 307 HOH HOH . E 5 HOH A 25 325 331 HOH HOH . E 5 HOH A 26 326 319 HOH HOH . E 5 HOH A 27 327 304 HOH HOH . E 5 HOH A 28 328 313 HOH HOH . E 5 HOH A 29 329 400 HOH HOH . E 5 HOH A 30 330 426 HOH HOH . E 5 HOH A 31 331 414 HOH HOH . E 5 HOH A 32 332 349 HOH HOH . E 5 HOH A 33 333 337 HOH HOH . E 5 HOH A 34 334 506 HOH HOH . E 5 HOH A 35 335 312 HOH HOH . E 5 HOH A 36 336 526 HOH HOH . E 5 HOH A 37 337 321 HOH HOH . E 5 HOH A 38 338 517 HOH HOH . E 5 HOH A 39 339 522 HOH HOH . E 5 HOH A 40 340 362 HOH HOH . E 5 HOH A 41 341 365 HOH HOH . E 5 HOH A 42 342 376 HOH HOH . E 5 HOH A 43 343 368 HOH HOH . E 5 HOH A 44 344 350 HOH HOH . E 5 HOH A 45 345 369 HOH HOH . E 5 HOH A 46 346 328 HOH HOH . E 5 HOH A 47 347 309 HOH HOH . E 5 HOH A 48 348 427 HOH HOH . E 5 HOH A 49 349 527 HOH HOH . E 5 HOH A 50 350 396 HOH HOH . E 5 HOH A 51 351 420 HOH HOH . E 5 HOH A 52 352 507 HOH HOH . E 5 HOH A 53 353 302 HOH HOH . E 5 HOH A 54 354 356 HOH HOH . E 5 HOH A 55 355 351 HOH HOH . E 5 HOH A 56 356 346 HOH HOH . E 5 HOH A 57 357 505 HOH HOH . E 5 HOH A 58 358 344 HOH HOH . E 5 HOH A 59 359 511 HOH HOH . E 5 HOH A 60 360 341 HOH HOH . E 5 HOH A 61 361 509 HOH HOH . E 5 HOH A 62 362 343 HOH HOH . E 5 HOH A 63 363 503 HOH HOH . E 5 HOH A 64 364 336 HOH HOH . E 5 HOH A 65 365 329 HOH HOH . E 5 HOH A 66 366 502 HOH HOH . E 5 HOH A 67 367 391 HOH HOH . E 5 HOH A 68 368 397 HOH HOH . E 5 HOH A 69 369 425 HOH HOH . E 5 HOH A 70 370 385 HOH HOH . E 5 HOH A 71 371 432 HOH HOH . E 5 HOH A 72 372 403 HOH HOH . E 5 HOH A 73 373 510 HOH HOH . E 5 HOH A 74 374 528 HOH HOH . E 5 HOH A 75 375 367 HOH HOH . E 5 HOH A 76 376 378 HOH HOH . E 5 HOH A 77 377 410 HOH HOH . E 5 HOH A 78 378 352 HOH HOH . E 5 HOH A 79 379 355 HOH HOH . E 5 HOH A 80 380 357 HOH HOH . E 5 HOH A 81 381 519 HOH HOH . E 5 HOH A 82 382 515 HOH HOH . E 5 HOH A 83 383 428 HOH HOH . E 5 HOH A 84 384 512 HOH HOH . E 5 HOH A 85 385 524 HOH HOH . E 5 HOH A 86 386 359 HOH HOH . E 5 HOH A 87 387 520 HOH HOH . E 5 HOH A 88 388 301 HOH HOH . E 5 HOH A 89 389 308 HOH HOH . E 5 HOH A 90 390 310 HOH HOH . E 5 HOH A 91 391 314 HOH HOH . E 5 HOH A 92 392 320 HOH HOH . E 5 HOH A 93 393 322 HOH HOH . E 5 HOH A 94 394 323 HOH HOH . E 5 HOH A 95 395 325 HOH HOH . E 5 HOH A 96 396 327 HOH HOH . E 5 HOH A 97 397 332 HOH HOH . E 5 HOH A 98 398 334 HOH HOH . E 5 HOH A 99 399 335 HOH HOH . E 5 HOH A 100 400 342 HOH HOH . E 5 HOH A 101 401 345 HOH HOH . E 5 HOH A 102 402 347 HOH HOH . E 5 HOH A 103 403 353 HOH HOH . E 5 HOH A 104 404 361 HOH HOH . E 5 HOH A 105 405 363 HOH HOH . E 5 HOH A 106 406 370 HOH HOH . E 5 HOH A 107 407 371 HOH HOH . E 5 HOH A 108 408 373 HOH HOH . E 5 HOH A 109 409 374 HOH HOH . E 5 HOH A 110 410 375 HOH HOH . E 5 HOH A 111 411 386 HOH HOH . E 5 HOH A 112 412 393 HOH HOH . E 5 HOH A 113 413 399 HOH HOH . E 5 HOH A 114 414 402 HOH HOH . E 5 HOH A 115 415 405 HOH HOH . E 5 HOH A 116 416 406 HOH HOH . E 5 HOH A 117 417 417 HOH HOH . E 5 HOH A 118 418 421 HOH HOH . E 5 HOH A 119 419 434 HOH HOH . E 5 HOH A 120 420 439 HOH HOH . E 5 HOH A 121 421 440 HOH HOH . E 5 HOH A 122 422 443 HOH HOH . E 5 HOH A 123 423 446 HOH HOH . E 5 HOH A 124 424 501 HOH HOH . E 5 HOH A 125 425 508 HOH HOH . E 5 HOH A 126 426 513 HOH HOH . E 5 HOH A 127 427 514 HOH HOH . E 5 HOH A 128 428 516 HOH HOH . E 5 HOH A 129 429 518 HOH HOH . E 5 HOH A 130 430 523 HOH HOH . E 5 HOH A 131 431 525 HOH HOH . E 5 HOH A 132 432 529 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BMA . . . B 2 29.966 19.242 22.591 1 28.12 ? C1 BMA 201 A 1 HETATM 2 C C2 BMA . . . B 2 29.051 19.981 23.562 1 23.92 ? C2 BMA 201 A 1 HETATM 3 C C3 BMA . . . B 2 28.376 18.927 24.423 1 26.76 ? C3 BMA 201 A 1 HETATM 4 C C4 BMA . . . B 2 27.67 17.87 23.557 1 30.71 ? C4 BMA 201 A 1 HETATM 5 C C5 BMA . . . B 2 28.618 17.263 22.518 1 31.78 ? C5 BMA 201 A 1 HETATM 6 C C6 BMA . . . B 2 27.888 16.229 21.661 1 32.79 ? C6 BMA 201 A 1 HETATM 7 O O1 BMA . . . B 2 30.612 20.262 21.823 1 29.53 ? O1 BMA 201 A 1 HETATM 8 O O2 BMA . . . B 2 28.118 20.809 22.855 1 25.95 ? O2 BMA 201 A 1 HETATM 9 O O3 BMA . . . B 2 27.474 19.596 25.308 1 26.37 ? O3 BMA 201 A 1 HETATM 10 O O4 BMA . . . B 2 27.154 16.815 24.372 1 31 ? O4 BMA 201 A 1 HETATM 11 O O5 BMA . . . B 2 29.18 18.352 21.774 1 40.78 ? O5 BMA 201 A 1 HETATM 12 O O6 BMA . . . B 2 28.184 16.322 20.257 1 44.55 ? O6 BMA 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #