data_4TKR # _model_server_result.job_id FhM3HY3dq1LyoaSvntemOQ _model_server_result.datetime_utc '2024-12-22 04:51:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tkr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":307}' # _entry.id 4TKR # _exptl.entry_id 4TKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-O-octyl-beta-D-glucopyranose _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4TKR _cell.length_a 95.647 _cell.length_b 95.647 _cell.length_c 125.027 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BGL _chem_comp.mon_nstd_flag n _chem_comp.name 2-O-octyl-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 2-O-octyl-beta-D-glucose;2-O-octyl-D-glucose;2-O-octyl-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BGL sing 70 n n C1 C2 BGL sing 71 n n C1 O5 BGL sing 72 n n C1 H1 BGL sing 73 n n O1 HO1 BGL sing 74 n n C2 O2 BGL sing 75 n n C2 C3 BGL sing 76 n n C2 H2 BGL sing 77 n n O2 C1' BGL sing 78 n n C3 O3 BGL sing 79 n n C3 C4 BGL sing 80 n n C3 H3 BGL sing 81 n n O3 HO3 BGL sing 82 n n C4 O4 BGL sing 83 n n C4 C5 BGL sing 84 n n C4 H4 BGL sing 85 n n O4 HO4 BGL sing 86 n n C5 O5 BGL sing 87 n n C5 C6 BGL sing 88 n n C5 H5 BGL sing 89 n n C6 O6 BGL sing 90 n n C6 H61 BGL sing 91 n n C6 H62 BGL sing 92 n n O6 HO6 BGL sing 93 n n C1' C2' BGL sing 94 n n C1' "H1'1" BGL sing 95 n n C1' "H1'2" BGL sing 96 n n C2' C3' BGL sing 97 n n C2' "H2'1" BGL sing 98 n n C2' "H2'2" BGL sing 99 n n C3' C4' BGL sing 100 n n C3' "H3'1" BGL sing 101 n n C3' "H3'2" BGL sing 102 n n C4' C5' BGL sing 103 n n C4' "H4'1" BGL sing 104 n n C4' "H4'2" BGL sing 105 n n C5' C6' BGL sing 106 n n C5' "H5'1" BGL sing 107 n n C5' "H5'2" BGL sing 108 n n C6' C7' BGL sing 109 n n C6' "H6'1" BGL sing 110 n n C6' "H6'2" BGL sing 111 n n C7' C8' BGL sing 112 n n C7' "H7'1" BGL sing 113 n n C7' "H7'2" BGL sing 114 n n C8' "H8'1" BGL sing 115 n n C8' "H8'2" BGL sing 116 n n C8' "H8'3" BGL sing 117 n n # _pdbx_chem_comp_identifier.comp_id BGL _pdbx_chem_comp_identifier.identifier b-D-Glcp2octyl _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4TKR _atom_sites.fract_transf_matrix[1][1] 0.010455 _atom_sites.fract_transf_matrix[1][2] 0.006036 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TPP A 1 301 301 TPP TPP . D 3 BGL A 1 302 302 BGL BGL . E 3 BGL A 1 303 303 BGL BGL . F 3 BGL A 1 304 304 BGL BGL . G 3 BGL A 1 305 305 BGL BGL . H 3 BGL A 1 306 306 BGL BGL . I 3 BGL A 1 307 307 BGL BGL . J 2 TPP B 1 301 301 TPP TPP . K 3 BGL B 1 302 302 BGL BGL . L 3 BGL B 1 303 303 BGL BGL . M 3 BGL B 1 304 304 BGL BGL . N 3 BGL B 1 305 305 BGL BGL . O 3 BGL B 1 306 306 BGL BGL . P 3 BGL B 1 307 307 BGL BGL . Q 3 BGL B 1 308 308 BGL BGL . R 3 BGL B 1 309 309 BGL BGL . S 3 BGL B 1 310 310 BGL BGL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BGL . . . I 3 8.544 52.673 29.244 1 83.47 ? C1 BGL 307 A 1 HETATM 2 O O1 BGL . . . I 3 9.514 51.778 29.535 1 90.64 ? O1 BGL 307 A 1 HETATM 3 C C2 BGL . . . I 3 8.296 53.541 30.442 1 85.17 ? C2 BGL 307 A 1 HETATM 4 O O2 BGL . . . I 3 7.711 52.754 31.482 1 88.65 ? O2 BGL 307 A 1 HETATM 5 C C3 BGL . . . I 3 7.411 54.654 30.136 1 80.03 ? C3 BGL 307 A 1 HETATM 6 O O3 BGL . . . I 3 7.193 55.474 31.309 1 79.76 ? O3 BGL 307 A 1 HETATM 7 C C4 BGL . . . I 3 7.927 55.463 29.023 1 79.57 ? C4 BGL 307 A 1 HETATM 8 O O4 BGL . . . I 3 7.059 56.546 28.714 1 81.59 ? O4 BGL 307 A 1 HETATM 9 C C5 BGL . . . I 3 8.126 54.628 27.785 1 82.21 ? C5 BGL 307 A 1 HETATM 10 O O5 BGL . . . I 3 8.896 53.425 28.027 1 75.3 ? O5 BGL 307 A 1 HETATM 11 C C6 BGL . . . I 3 8.746 55.44 26.715 1 89.99 ? C6 BGL 307 A 1 HETATM 12 O O6 BGL . . . I 3 7.928 55.813 25.635 1 94.2 ? O6 BGL 307 A 1 HETATM 13 C C1' BGL . . . I 3 8.465 52.415 32.612 1 80.1 ? C1' BGL 307 A 1 HETATM 14 C C2' BGL . . . I 3 7.989 51.252 33.44 1 71.98 ? C2' BGL 307 A 1 HETATM 15 C C3' BGL . . . I 3 9.033 50.555 34.378 1 62.26 ? C3' BGL 307 A 1 HETATM 16 C C4' BGL . . . I 3 9.153 51.049 35.788 1 66.43 ? C4' BGL 307 A 1 HETATM 17 C C5' BGL . . . I 3 10.391 50.62 36.582 1 67.29 ? C5' BGL 307 A 1 HETATM 18 C C6' BGL . . . I 3 10.865 49.202 36.436 1 54.25 ? C6' BGL 307 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #