data_4TKT # _model_server_result.job_id phznSgVBrS_EBJdT0Wq5Ww _model_server_result.datetime_utc '2024-12-22 06:02:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tkt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":4006}' # _entry.id 4TKT # _exptl.entry_id 4TKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4TKT _cell.length_a 83.331 _cell.length_b 83.331 _cell.length_c 203.725 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 6 A GLY 3140 1_555 A N MSE 7 A MSE 3141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 7 A MSE 3141 1_555 A N ALA 8 A ALA 3142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C GLY 13 A GLY 3147 1_555 A N MSE 14 A MSE 3148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 14 A MSE 3148 1_555 A N ALA 15 A ALA 3149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C THR 90 A THR 3224 1_555 A N MSE 91 A MSE 3225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 91 A MSE 3225 1_555 A N ASP 92 A ASP 3226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C ALA 137 A ALA 3271 1_555 A N MSE 138 A MSE 3272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 138 A MSE 3272 1_555 A N TYR 139 A TYR 3273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C THR 184 A THR 3318 1_555 A N MSE 185 A MSE 3319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C MSE 185 A MSE 3319 1_555 A N CYS 186 A CYS 3320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C LEU 223 A LEU 3357 1_555 A N MSE 224 A MSE 3358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C MSE 224 A MSE 3358 1_555 A N ILE 225 A ILE 3359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 A C GLN 377 A GLN 3511 1_555 A N MSE 378 A MSE 3512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C MSE 378 A MSE 3512 1_555 A N ARG 379 A ARG 3513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 A C ALA 506 A ALA 3640 1_555 A N MSE 507 A MSE 3641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 A C MSE 507 A MSE 3641 1_555 A N THR 508 A THR 3642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4TKT _atom_sites.fract_transf_matrix[1][1] 0.012 _atom_sites.fract_transf_matrix[1][2] 0.006928 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 4001 4001 CL CL . C 3 SO4 A 1 4002 4002 SO4 SO4 . D 3 SO4 A 1 4003 4003 SO4 SO4 . E 4 MES A 1 4004 4004 MES MES . F 5 GOL A 1 4005 4005 GOL GOL . G 5 GOL A 1 4006 4006 GOL GOL . H 6 HOH A 1 4101 159 HOH HOH . H 6 HOH A 2 4102 102 HOH HOH . H 6 HOH A 3 4103 37 HOH HOH . H 6 HOH A 4 4104 33 HOH HOH . H 6 HOH A 5 4105 10 HOH HOH . H 6 HOH A 6 4106 111 HOH HOH . H 6 HOH A 7 4107 53 HOH HOH . H 6 HOH A 8 4108 4 HOH HOH . H 6 HOH A 9 4109 1 HOH HOH . H 6 HOH A 10 4110 12 HOH HOH . H 6 HOH A 11 4111 101 HOH HOH . H 6 HOH A 12 4112 70 HOH HOH . H 6 HOH A 13 4113 3 HOH HOH . H 6 HOH A 14 4114 73 HOH HOH . H 6 HOH A 15 4115 117 HOH HOH . H 6 HOH A 16 4116 17 HOH HOH . H 6 HOH A 17 4117 135 HOH HOH . H 6 HOH A 18 4118 75 HOH HOH . H 6 HOH A 19 4119 22 HOH HOH . H 6 HOH A 20 4120 14 HOH HOH . H 6 HOH A 21 4121 146 HOH HOH . H 6 HOH A 22 4122 154 HOH HOH . H 6 HOH A 23 4123 142 HOH HOH . H 6 HOH A 24 4124 97 HOH HOH . H 6 HOH A 25 4125 36 HOH HOH . H 6 HOH A 26 4126 8 HOH HOH . H 6 HOH A 27 4127 41 HOH HOH . H 6 HOH A 28 4128 76 HOH HOH . H 6 HOH A 29 4129 85 HOH HOH . H 6 HOH A 30 4130 98 HOH HOH . H 6 HOH A 31 4131 137 HOH HOH . H 6 HOH A 32 4132 151 HOH HOH . H 6 HOH A 33 4133 80 HOH HOH . H 6 HOH A 34 4134 62 HOH HOH . H 6 HOH A 35 4135 157 HOH HOH . H 6 HOH A 36 4136 84 HOH HOH . H 6 HOH A 37 4137 28 HOH HOH . H 6 HOH A 38 4138 108 HOH HOH . H 6 HOH A 39 4139 43 HOH HOH . H 6 HOH A 40 4140 161 HOH HOH . H 6 HOH A 41 4141 152 HOH HOH . H 6 HOH A 42 4142 46 HOH HOH . H 6 HOH A 43 4143 2 HOH HOH . H 6 HOH A 44 4144 5 HOH HOH . H 6 HOH A 45 4145 6 HOH HOH . H 6 HOH A 46 4146 7 HOH HOH . H 6 HOH A 47 4147 9 HOH HOH . H 6 HOH A 48 4148 11 HOH HOH . H 6 HOH A 49 4149 13 HOH HOH . H 6 HOH A 50 4150 15 HOH HOH . H 6 HOH A 51 4151 16 HOH HOH . H 6 HOH A 52 4152 18 HOH HOH . H 6 HOH A 53 4153 19 HOH HOH . H 6 HOH A 54 4154 20 HOH HOH . H 6 HOH A 55 4155 21 HOH HOH . H 6 HOH A 56 4156 23 HOH HOH . H 6 HOH A 57 4157 24 HOH HOH . H 6 HOH A 58 4158 25 HOH HOH . H 6 HOH A 59 4159 26 HOH HOH . H 6 HOH A 60 4160 27 HOH HOH . H 6 HOH A 61 4161 29 HOH HOH . H 6 HOH A 62 4162 30 HOH HOH . H 6 HOH A 63 4163 31 HOH HOH . H 6 HOH A 64 4164 32 HOH HOH . H 6 HOH A 65 4165 34 HOH HOH . H 6 HOH A 66 4166 35 HOH HOH . H 6 HOH A 67 4167 38 HOH HOH . H 6 HOH A 68 4168 39 HOH HOH . H 6 HOH A 69 4169 40 HOH HOH . H 6 HOH A 70 4170 42 HOH HOH . H 6 HOH A 71 4171 44 HOH HOH . H 6 HOH A 72 4172 45 HOH HOH . H 6 HOH A 73 4173 47 HOH HOH . H 6 HOH A 74 4174 48 HOH HOH . H 6 HOH A 75 4175 49 HOH HOH . H 6 HOH A 76 4176 50 HOH HOH . H 6 HOH A 77 4177 51 HOH HOH . H 6 HOH A 78 4178 52 HOH HOH . H 6 HOH A 79 4179 54 HOH HOH . H 6 HOH A 80 4180 55 HOH HOH . H 6 HOH A 81 4181 56 HOH HOH . H 6 HOH A 82 4182 57 HOH HOH . H 6 HOH A 83 4183 58 HOH HOH . H 6 HOH A 84 4184 59 HOH HOH . H 6 HOH A 85 4185 60 HOH HOH . H 6 HOH A 86 4186 61 HOH HOH . H 6 HOH A 87 4187 63 HOH HOH . H 6 HOH A 88 4188 64 HOH HOH . H 6 HOH A 89 4189 65 HOH HOH . H 6 HOH A 90 4190 66 HOH HOH . H 6 HOH A 91 4191 67 HOH HOH . H 6 HOH A 92 4192 68 HOH HOH . H 6 HOH A 93 4193 69 HOH HOH . H 6 HOH A 94 4194 71 HOH HOH . H 6 HOH A 95 4195 72 HOH HOH . H 6 HOH A 96 4196 74 HOH HOH . H 6 HOH A 97 4197 77 HOH HOH . H 6 HOH A 98 4198 78 HOH HOH . H 6 HOH A 99 4199 79 HOH HOH . H 6 HOH A 100 4200 81 HOH HOH . H 6 HOH A 101 4201 82 HOH HOH . H 6 HOH A 102 4202 83 HOH HOH . H 6 HOH A 103 4203 86 HOH HOH . H 6 HOH A 104 4204 87 HOH HOH . H 6 HOH A 105 4205 88 HOH HOH . H 6 HOH A 106 4206 89 HOH HOH . H 6 HOH A 107 4207 90 HOH HOH . H 6 HOH A 108 4208 91 HOH HOH . H 6 HOH A 109 4209 92 HOH HOH . H 6 HOH A 110 4210 93 HOH HOH . H 6 HOH A 111 4211 94 HOH HOH . H 6 HOH A 112 4212 95 HOH HOH . H 6 HOH A 113 4213 96 HOH HOH . H 6 HOH A 114 4214 99 HOH HOH . H 6 HOH A 115 4215 100 HOH HOH . H 6 HOH A 116 4216 103 HOH HOH . H 6 HOH A 117 4217 104 HOH HOH . H 6 HOH A 118 4218 105 HOH HOH . H 6 HOH A 119 4219 106 HOH HOH . H 6 HOH A 120 4220 107 HOH HOH . H 6 HOH A 121 4221 109 HOH HOH . H 6 HOH A 122 4222 110 HOH HOH . H 6 HOH A 123 4223 112 HOH HOH . H 6 HOH A 124 4224 113 HOH HOH . H 6 HOH A 125 4225 114 HOH HOH . H 6 HOH A 126 4226 115 HOH HOH . H 6 HOH A 127 4227 116 HOH HOH . H 6 HOH A 128 4228 118 HOH HOH . H 6 HOH A 129 4229 119 HOH HOH . H 6 HOH A 130 4230 120 HOH HOH . H 6 HOH A 131 4231 121 HOH HOH . H 6 HOH A 132 4232 122 HOH HOH . H 6 HOH A 133 4233 123 HOH HOH . H 6 HOH A 134 4234 124 HOH HOH . H 6 HOH A 135 4235 125 HOH HOH . H 6 HOH A 136 4236 126 HOH HOH . H 6 HOH A 137 4237 127 HOH HOH . H 6 HOH A 138 4238 128 HOH HOH . H 6 HOH A 139 4239 129 HOH HOH . H 6 HOH A 140 4240 130 HOH HOH . H 6 HOH A 141 4241 131 HOH HOH . H 6 HOH A 142 4242 132 HOH HOH . H 6 HOH A 143 4243 133 HOH HOH . H 6 HOH A 144 4244 134 HOH HOH . H 6 HOH A 145 4245 136 HOH HOH . H 6 HOH A 146 4246 138 HOH HOH . H 6 HOH A 147 4247 139 HOH HOH . H 6 HOH A 148 4248 140 HOH HOH . H 6 HOH A 149 4249 141 HOH HOH . H 6 HOH A 150 4250 143 HOH HOH . H 6 HOH A 151 4251 144 HOH HOH . H 6 HOH A 152 4252 145 HOH HOH . H 6 HOH A 153 4253 147 HOH HOH . H 6 HOH A 154 4254 148 HOH HOH . H 6 HOH A 155 4255 149 HOH HOH . H 6 HOH A 156 4256 150 HOH HOH . H 6 HOH A 157 4257 153 HOH HOH . H 6 HOH A 158 4258 155 HOH HOH . H 6 HOH A 159 4259 156 HOH HOH . H 6 HOH A 160 4260 158 HOH HOH . H 6 HOH A 161 4261 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 56.646 21.324 11.793 1 61 ? C1 GOL 4006 A 1 HETATM 2 O O1 GOL . . . G 5 55.752 22.154 11.086 1 61.94 ? O1 GOL 4006 A 1 HETATM 3 C C2 GOL . . . G 5 57.891 22.117 12.169 1 63.75 ? C2 GOL 4006 A 1 HETATM 4 O O2 GOL . . . G 5 57.618 23.493 12.046 1 72.85 ? O2 GOL 4006 A 1 HETATM 5 C C3 GOL . . . G 5 58.279 21.808 13.609 1 58.93 ? C3 GOL 4006 A 1 HETATM 6 O O3 GOL . . . G 5 58.64 20.449 13.715 1 57.27 ? O3 GOL 4006 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #