data_4TKZ # _model_server_result.job_id txjxjubFLW7GFFCKaegUyA _model_server_result.datetime_utc '2025-03-17 07:43:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":202}' # _entry.id 4TKZ # _exptl.entry_id 4TKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.14 _cell.angle_beta 90.02 _cell.angle_gamma 60.97 _cell.entry_id 4TKZ _cell.length_a 52.293 _cell.length_b 53.8 _cell.length_c 94.887 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,R,S 1 1 D,L,M,N,O,U 2 1 C,K,T 2 2 E,P,Q,V 3 1 F,W 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_645 x+1,y-1,z 1 0 0 0 1 0 0 0 1 26.185608 -47.040877 0 3 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 26.107392 47.040877 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4TKZ _atom_sites.fract_transf_matrix[1][1] 0.019123 _atom_sites.fract_transf_matrix[1][2] -0.010615 _atom_sites.fract_transf_matrix[1][3] -0.000235 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021259 _atom_sites.fract_transf_matrix[2][3] 0.000482 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL A 1 201 1 GOL GOL . H 2 GOL A 1 202 11 GOL GOL . I 2 GOL B 1 201 4 GOL GOL . J 2 GOL B 1 202 10 GOL GOL . K 2 GOL C 1 201 7 GOL GOL . L 2 GOL D 1 201 2 GOL GOL . M 2 GOL D 1 202 3 GOL GOL . N 2 GOL D 1 203 6 GOL GOL . O 2 GOL D 1 204 8 GOL GOL . P 2 GOL E 1 201 5 GOL GOL . Q 2 GOL E 1 202 9 GOL GOL . R 3 HOH A 1 301 106 HOH HOH . R 3 HOH A 2 302 263 HOH HOH . R 3 HOH A 3 303 19 HOH HOH . R 3 HOH A 4 304 220 HOH HOH . R 3 HOH A 5 305 76 HOH HOH . R 3 HOH A 6 306 238 HOH HOH . R 3 HOH A 7 307 33 HOH HOH . R 3 HOH A 8 308 88 HOH HOH . R 3 HOH A 9 309 7 HOH HOH . R 3 HOH A 10 310 8 HOH HOH . R 3 HOH A 11 311 9 HOH HOH . R 3 HOH A 12 312 10 HOH HOH . R 3 HOH A 13 313 15 HOH HOH . R 3 HOH A 14 314 20 HOH HOH . R 3 HOH A 15 315 25 HOH HOH . R 3 HOH A 16 316 26 HOH HOH . R 3 HOH A 17 317 27 HOH HOH . R 3 HOH A 18 318 28 HOH HOH . R 3 HOH A 19 319 30 HOH HOH . R 3 HOH A 20 320 40 HOH HOH . R 3 HOH A 21 321 43 HOH HOH . R 3 HOH A 22 322 51 HOH HOH . R 3 HOH A 23 323 54 HOH HOH . R 3 HOH A 24 324 56 HOH HOH . R 3 HOH A 25 325 58 HOH HOH . R 3 HOH A 26 326 66 HOH HOH . R 3 HOH A 27 327 68 HOH HOH . R 3 HOH A 28 328 86 HOH HOH . R 3 HOH A 29 329 100 HOH HOH . R 3 HOH A 30 330 128 HOH HOH . R 3 HOH A 31 331 148 HOH HOH . R 3 HOH A 32 332 149 HOH HOH . R 3 HOH A 33 333 150 HOH HOH . R 3 HOH A 34 334 159 HOH HOH . R 3 HOH A 35 335 166 HOH HOH . R 3 HOH A 36 336 170 HOH HOH . R 3 HOH A 37 337 192 HOH HOH . R 3 HOH A 38 338 193 HOH HOH . R 3 HOH A 39 339 208 HOH HOH . R 3 HOH A 40 340 211 HOH HOH . R 3 HOH A 41 341 223 HOH HOH . R 3 HOH A 42 342 224 HOH HOH . R 3 HOH A 43 343 225 HOH HOH . R 3 HOH A 44 344 233 HOH HOH . R 3 HOH A 45 345 235 HOH HOH . R 3 HOH A 46 346 236 HOH HOH . R 3 HOH A 47 347 237 HOH HOH . R 3 HOH A 48 348 239 HOH HOH . R 3 HOH A 49 349 240 HOH HOH . R 3 HOH A 50 350 259 HOH HOH . R 3 HOH A 51 351 260 HOH HOH . S 3 HOH B 1 301 108 HOH HOH . S 3 HOH B 2 302 136 HOH HOH . S 3 HOH B 3 303 49 HOH HOH . S 3 HOH B 4 304 67 HOH HOH . S 3 HOH B 5 305 99 HOH HOH . S 3 HOH B 6 306 61 HOH HOH . S 3 HOH B 7 307 226 HOH HOH . S 3 HOH B 8 308 87 HOH HOH . S 3 HOH B 9 309 130 HOH HOH . S 3 HOH B 10 310 3 HOH HOH . S 3 HOH B 11 311 12 HOH HOH . S 3 HOH B 12 312 22 HOH HOH . S 3 HOH B 13 313 24 HOH HOH . S 3 HOH B 14 314 46 HOH HOH . S 3 HOH B 15 315 47 HOH HOH . S 3 HOH B 16 316 48 HOH HOH . S 3 HOH B 17 317 50 HOH HOH . S 3 HOH B 18 318 55 HOH HOH . S 3 HOH B 19 319 60 HOH HOH . S 3 HOH B 20 320 69 HOH HOH . S 3 HOH B 21 321 73 HOH HOH . S 3 HOH B 22 322 80 HOH HOH . S 3 HOH B 23 323 84 HOH HOH . S 3 HOH B 24 324 92 HOH HOH . S 3 HOH B 25 325 112 HOH HOH . S 3 HOH B 26 326 113 HOH HOH . S 3 HOH B 27 327 120 HOH HOH . S 3 HOH B 28 328 129 HOH HOH . S 3 HOH B 29 329 137 HOH HOH . S 3 HOH B 30 330 138 HOH HOH . S 3 HOH B 31 331 141 HOH HOH . S 3 HOH B 32 332 162 HOH HOH . S 3 HOH B 33 333 165 HOH HOH . S 3 HOH B 34 334 171 HOH HOH . S 3 HOH B 35 335 172 HOH HOH . S 3 HOH B 36 336 173 HOH HOH . S 3 HOH B 37 337 174 HOH HOH . S 3 HOH B 38 338 183 HOH HOH . S 3 HOH B 39 339 184 HOH HOH . S 3 HOH B 40 340 185 HOH HOH . S 3 HOH B 41 341 191 HOH HOH . S 3 HOH B 42 342 196 HOH HOH . S 3 HOH B 43 343 197 HOH HOH . S 3 HOH B 44 344 203 HOH HOH . S 3 HOH B 45 345 205 HOH HOH . S 3 HOH B 46 346 255 HOH HOH . S 3 HOH B 47 347 256 HOH HOH . S 3 HOH B 48 348 262 HOH HOH . T 3 HOH C 1 301 189 HOH HOH . T 3 HOH C 2 302 38 HOH HOH . T 3 HOH C 3 303 194 HOH HOH . T 3 HOH C 4 304 72 HOH HOH . T 3 HOH C 5 305 213 HOH HOH . T 3 HOH C 6 306 79 HOH HOH . T 3 HOH C 7 307 265 HOH HOH . T 3 HOH C 8 308 264 HOH HOH . T 3 HOH C 9 309 59 HOH HOH . T 3 HOH C 10 310 18 HOH HOH . T 3 HOH C 11 311 2 HOH HOH . T 3 HOH C 12 312 206 HOH HOH . T 3 HOH C 13 313 42 HOH HOH . T 3 HOH C 14 314 131 HOH HOH . T 3 HOH C 15 315 187 HOH HOH . T 3 HOH C 16 316 216 HOH HOH . T 3 HOH C 17 317 127 HOH HOH . T 3 HOH C 18 318 123 HOH HOH . T 3 HOH C 19 319 212 HOH HOH . T 3 HOH C 20 320 125 HOH HOH . T 3 HOH C 21 321 252 HOH HOH . T 3 HOH C 22 322 78 HOH HOH . T 3 HOH C 23 323 1 HOH HOH . T 3 HOH C 24 324 36 HOH HOH . T 3 HOH C 25 325 37 HOH HOH . T 3 HOH C 26 326 39 HOH HOH . T 3 HOH C 27 327 63 HOH HOH . T 3 HOH C 28 328 64 HOH HOH . T 3 HOH C 29 329 93 HOH HOH . T 3 HOH C 30 330 105 HOH HOH . T 3 HOH C 31 331 115 HOH HOH . T 3 HOH C 32 332 116 HOH HOH . T 3 HOH C 33 333 117 HOH HOH . T 3 HOH C 34 334 144 HOH HOH . T 3 HOH C 35 335 151 HOH HOH . T 3 HOH C 36 336 155 HOH HOH . T 3 HOH C 37 337 156 HOH HOH . T 3 HOH C 38 338 157 HOH HOH . T 3 HOH C 39 339 158 HOH HOH . T 3 HOH C 40 340 167 HOH HOH . T 3 HOH C 41 341 186 HOH HOH . T 3 HOH C 42 342 188 HOH HOH . T 3 HOH C 43 343 199 HOH HOH . T 3 HOH C 44 344 201 HOH HOH . T 3 HOH C 45 345 202 HOH HOH . T 3 HOH C 46 346 210 HOH HOH . T 3 HOH C 47 347 228 HOH HOH . T 3 HOH C 48 348 229 HOH HOH . T 3 HOH C 49 349 232 HOH HOH . T 3 HOH C 50 350 241 HOH HOH . T 3 HOH C 51 351 242 HOH HOH . U 3 HOH D 1 301 121 HOH HOH . U 3 HOH D 2 302 247 HOH HOH . U 3 HOH D 3 303 153 HOH HOH . U 3 HOH D 4 304 74 HOH HOH . U 3 HOH D 5 305 71 HOH HOH . U 3 HOH D 6 306 133 HOH HOH . U 3 HOH D 7 307 204 HOH HOH . U 3 HOH D 8 308 81 HOH HOH . U 3 HOH D 9 309 6 HOH HOH . U 3 HOH D 10 310 161 HOH HOH . U 3 HOH D 11 311 258 HOH HOH . U 3 HOH D 12 312 44 HOH HOH . U 3 HOH D 13 313 75 HOH HOH . U 3 HOH D 14 314 209 HOH HOH . U 3 HOH D 15 315 152 HOH HOH . U 3 HOH D 16 316 221 HOH HOH . U 3 HOH D 17 317 214 HOH HOH . U 3 HOH D 18 318 90 HOH HOH . U 3 HOH D 19 319 163 HOH HOH . U 3 HOH D 20 320 95 HOH HOH . U 3 HOH D 21 321 14 HOH HOH . U 3 HOH D 22 322 17 HOH HOH . U 3 HOH D 23 323 96 HOH HOH . U 3 HOH D 24 324 107 HOH HOH . U 3 HOH D 25 325 110 HOH HOH . U 3 HOH D 26 326 114 HOH HOH . U 3 HOH D 27 327 118 HOH HOH . U 3 HOH D 28 328 119 HOH HOH . U 3 HOH D 29 329 142 HOH HOH . U 3 HOH D 30 330 145 HOH HOH . U 3 HOH D 31 331 146 HOH HOH . U 3 HOH D 32 332 168 HOH HOH . U 3 HOH D 33 333 169 HOH HOH . U 3 HOH D 34 334 175 HOH HOH . U 3 HOH D 35 335 179 HOH HOH . U 3 HOH D 36 336 182 HOH HOH . U 3 HOH D 37 337 222 HOH HOH . U 3 HOH D 38 338 243 HOH HOH . U 3 HOH D 39 339 244 HOH HOH . U 3 HOH D 40 340 245 HOH HOH . U 3 HOH D 41 341 246 HOH HOH . V 3 HOH E 1 301 35 HOH HOH . V 3 HOH E 2 302 52 HOH HOH . V 3 HOH E 3 303 140 HOH HOH . V 3 HOH E 4 304 111 HOH HOH . V 3 HOH E 5 305 21 HOH HOH . V 3 HOH E 6 306 217 HOH HOH . V 3 HOH E 7 307 122 HOH HOH . V 3 HOH E 8 308 94 HOH HOH . V 3 HOH E 9 309 91 HOH HOH . V 3 HOH E 10 310 230 HOH HOH . V 3 HOH E 11 311 139 HOH HOH . V 3 HOH E 12 312 62 HOH HOH . V 3 HOH E 13 313 82 HOH HOH . V 3 HOH E 14 314 83 HOH HOH . V 3 HOH E 15 315 98 HOH HOH . V 3 HOH E 16 316 103 HOH HOH . V 3 HOH E 17 317 124 HOH HOH . V 3 HOH E 18 318 126 HOH HOH . V 3 HOH E 19 319 135 HOH HOH . V 3 HOH E 20 320 154 HOH HOH . V 3 HOH E 21 321 164 HOH HOH . V 3 HOH E 22 322 218 HOH HOH . V 3 HOH E 23 323 227 HOH HOH . V 3 HOH E 24 324 231 HOH HOH . V 3 HOH E 25 325 248 HOH HOH . V 3 HOH E 26 326 249 HOH HOH . V 3 HOH E 27 327 254 HOH HOH . W 3 HOH F 1 201 70 HOH HOH . W 3 HOH F 2 202 102 HOH HOH . W 3 HOH F 3 203 77 HOH HOH . W 3 HOH F 4 204 89 HOH HOH . W 3 HOH F 5 205 32 HOH HOH . W 3 HOH F 6 206 11 HOH HOH . W 3 HOH F 7 207 16 HOH HOH . W 3 HOH F 8 208 31 HOH HOH . W 3 HOH F 9 209 41 HOH HOH . W 3 HOH F 10 210 257 HOH HOH . W 3 HOH F 11 211 34 HOH HOH . W 3 HOH F 12 212 4 HOH HOH . W 3 HOH F 13 213 5 HOH HOH . W 3 HOH F 14 214 13 HOH HOH . W 3 HOH F 15 215 23 HOH HOH . W 3 HOH F 16 216 29 HOH HOH . W 3 HOH F 17 217 45 HOH HOH . W 3 HOH F 18 218 53 HOH HOH . W 3 HOH F 19 219 57 HOH HOH . W 3 HOH F 20 220 65 HOH HOH . W 3 HOH F 21 221 85 HOH HOH . W 3 HOH F 22 222 97 HOH HOH . W 3 HOH F 23 223 101 HOH HOH . W 3 HOH F 24 224 104 HOH HOH . W 3 HOH F 25 225 109 HOH HOH . W 3 HOH F 26 226 132 HOH HOH . W 3 HOH F 27 227 134 HOH HOH . W 3 HOH F 28 228 143 HOH HOH . W 3 HOH F 29 229 147 HOH HOH . W 3 HOH F 30 230 160 HOH HOH . W 3 HOH F 31 231 176 HOH HOH . W 3 HOH F 32 232 177 HOH HOH . W 3 HOH F 33 233 178 HOH HOH . W 3 HOH F 34 234 180 HOH HOH . W 3 HOH F 35 235 181 HOH HOH . W 3 HOH F 36 236 190 HOH HOH . W 3 HOH F 37 237 195 HOH HOH . W 3 HOH F 38 238 198 HOH HOH . W 3 HOH F 39 239 200 HOH HOH . W 3 HOH F 40 240 207 HOH HOH . W 3 HOH F 41 241 215 HOH HOH . W 3 HOH F 42 242 219 HOH HOH . W 3 HOH F 43 243 234 HOH HOH . W 3 HOH F 44 244 250 HOH HOH . W 3 HOH F 45 245 251 HOH HOH . W 3 HOH F 46 246 253 HOH HOH . W 3 HOH F 47 247 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Q 2 41.495 62.346 43.946 1 43.96 ? C1 GOL 202 E 1 HETATM 2 O O1 GOL . . . Q 2 41.567 63.361 42.963 1 37.7 ? O1 GOL 202 E 1 HETATM 3 C C2 GOL . . . Q 2 40.126 62.393 44.616 1 41.77 ? C2 GOL 202 E 1 HETATM 4 O O2 GOL . . . Q 2 39.416 63.423 43.984 1 37.05 ? O2 GOL 202 E 1 HETATM 5 C C3 GOL . . . Q 2 39.364 61.092 44.368 1 34.18 ? C3 GOL 202 E 1 HETATM 6 O O3 GOL . . . Q 2 38.631 60.68 45.496 1 38.55 ? O3 GOL 202 E 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #