data_4TLM
#
_model_server_result.job_id            xy39TpaV5HmU3H1HE6DEeQ 
_model_server_result.datetime_utc      '2024-11-13 22:37:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4tlm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":902}' 
#
_entry.id    4TLM 
#
_exptl.entry_id    4TLM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.82 
_cell.angle_gamma         90 
_cell.entry_id            4TLM 
_cell.length_a            203.49 
_cell.length_b            118.43 
_cell.length_c            226.59 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TLM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 58 A CYS 79 1_555 A SG CYS 287 A CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 399 A CYS 420 1_555 A SG CYS 431 A CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 415 A CYS 436 1_555 A SG CYS 432 A CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 713 A CYS 734 1_555 A SG CYS 767 A CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 62 B CYS 81 1_555 B SG CYS 297 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 B SG CYS 197 B CYS 216 1_555 D SG CYS 197 D CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 B SG CYS 403 B CYS 422 1_555 B SG CYS 430 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 B SG CYS 410 B CYS 429 1_555 B SG CYS 431 B CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 B SG CYS 710 B CYS 729 1_555 B SG CYS 765 B CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 C SG CYS 58 C CYS 79 1_555 C SG CYS 287 C CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf11 C SG CYS 399 C CYS 420 1_555 C SG CYS 431 C CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 C SG CYS 415 C CYS 436 1_555 C SG CYS 432 C CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf13 D SG CYS 62 D CYS 81 1_555 D SG CYS 297 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf14 D SG CYS 403 D CYS 422 1_555 D SG CYS 430 D CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf15 D SG CYS 410 D CYS 429 1_555 D SG CYS 431 D CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf16 D SG CYS 710 D CYS 729 1_555 D SG CYS 765 D CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 A ND2 ASN 40 A ASN 61 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 C ND2 ASN 40 C ASN 61 1_555 K C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale3 D ND2 ASN 652 D ASN 671 1_555 N C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 269 n n 
C1 O1 NAG sing 270 n n 
C1 O5 NAG sing 271 n n 
C1 H1 NAG sing 272 n n 
C2 C3 NAG sing 273 n n 
C2 N2 NAG sing 274 n n 
C2 H2 NAG sing 275 n n 
C3 C4 NAG sing 276 n n 
C3 O3 NAG sing 277 n n 
C3 H3 NAG sing 278 n n 
C4 C5 NAG sing 279 n n 
C4 O4 NAG sing 280 n n 
C4 H4 NAG sing 281 n n 
C5 C6 NAG sing 282 n n 
C5 O5 NAG sing 283 n n 
C5 H5 NAG sing 284 n n 
C6 O6 NAG sing 285 n n 
C6 H61 NAG sing 286 n n 
C6 H62 NAG sing 287 n n 
C7 C8 NAG sing 288 n n 
C7 N2 NAG sing 289 n n 
C7 O7 NAG doub 290 n n 
C8 H81 NAG sing 291 n n 
C8 H82 NAG sing 292 n n 
C8 H83 NAG sing 293 n n 
N2 HN2 NAG sing 294 n n 
O1 HO1 NAG sing 295 n n 
O3 HO3 NAG sing 296 n n 
O4 HO4 NAG sing 297 n n 
O6 HO6 NAG sing 298 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4TLM 
_atom_sites.fract_transf_matrix[1][1]    0.004914 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001209 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004545 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 901 995 NAG NAG . 
F 3 NAG A 1 902 996 NAG NAG . 
G 3 NAG A 1 903 997 NAG NAG . 
H 4 1AC A 1 904 2001 1AC 1AC . 
I 5 QEM A 1 905 899 QEM QEM . 
J 3 NAG B 1 901 995 NAG NAG . 
K 3 NAG C 1 901 995 NAG NAG . 
L 3 NAG C 1 902 996 NAG NAG . 
M 5 QEM C 1 903 899 QEM QEM . 
N 3 NAG D 1 901 995 NAG NAG . 
O 6 JEG D 1 902 2001 JEG JEG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 3 47.31 -10.657 246.965 1 196.55 ? C1 NAG 902 C 1 
HETATM 2 C C2 NAG . . . L 3 47.094 -11.104 245.575 1 205.32 ? C2 NAG 902 C 1 
HETATM 3 C C3 NAG . . . L 3 48.008 -10.346 244.614 1 210.06 ? C3 NAG 902 C 1 
HETATM 4 C C4 NAG . . . L 3 48.313 -8.95 245.145 1 204.75 ? C4 NAG 902 C 1 
HETATM 5 C C5 NAG . . . L 3 48.891 -9.027 246.558 1 202.99 ? C5 NAG 902 C 1 
HETATM 6 C C6 NAG . . . L 3 48.307 -7.981 247.481 1 209.4 ? C6 NAG 902 C 1 
HETATM 7 C C7 NAG . . . L 3 46.322 -13.248 244.734 1 228.82 ? C7 NAG 902 C 1 
HETATM 8 C C8 NAG . . . L 3 46.574 -14.719 244.631 1 213.41 ? C8 NAG 902 C 1 
HETATM 9 N N2 NAG . . . L 3 47.228 -12.539 245.412 1 204.45 ? N2 NAG 902 C 1 
HETATM 10 O O3 NAG . . . L 3 47.321 -10.223 243.374 1 217.29 ? O3 NAG 902 C 1 
HETATM 11 O O4 NAG . . . L 3 49.221 -8.277 244.279 1 191.23 ? O4 NAG 902 C 1 
HETATM 12 O O5 NAG . . . L 3 48.588 -10.307 247.139 1 193.23 ? O5 NAG 902 C 1 
HETATM 13 O O6 NAG . . . L 3 49.306 -7.359 248.278 1 189.79 ? O6 NAG 902 C 1 
HETATM 14 O O7 NAG . . . L 3 45.339 -12.718 244.221 1 252.36 ? O7 NAG 902 C 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#