data_4TLM
#
_model_server_result.job_id            cm4Y4M26D7BRX8wbn0nL6A 
_model_server_result.datetime_utc      '2024-12-01 00:08:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4tlm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":903}' 
#
_entry.id    4TLM 
#
_exptl.entry_id    4TLM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              339.471 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(1R,2S)-3-(4-benzylpiperidin-1-yl)-1-hydroxy-2-methylpropyl]phenol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.82 
_cell.angle_gamma         90 
_cell.entry_id            4TLM 
_cell.length_a            203.49 
_cell.length_b            118.43 
_cell.length_c            226.59 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TLM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 58 A CYS 79 1_555 A SG CYS 287 A CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 399 A CYS 420 1_555 A SG CYS 431 A CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 415 A CYS 436 1_555 A SG CYS 432 A CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 713 A CYS 734 1_555 A SG CYS 767 A CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 62 B CYS 81 1_555 B SG CYS 297 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 B SG CYS 197 B CYS 216 1_555 D SG CYS 197 D CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 B SG CYS 403 B CYS 422 1_555 B SG CYS 430 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 B SG CYS 410 B CYS 429 1_555 B SG CYS 431 B CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 B SG CYS 710 B CYS 729 1_555 B SG CYS 765 B CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 C SG CYS 58 C CYS 79 1_555 C SG CYS 287 C CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf11 C SG CYS 399 C CYS 420 1_555 C SG CYS 431 C CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 C SG CYS 415 C CYS 436 1_555 C SG CYS 432 C CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf13 D SG CYS 62 D CYS 81 1_555 D SG CYS 297 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf14 D SG CYS 403 D CYS 422 1_555 D SG CYS 430 D CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf15 D SG CYS 410 D CYS 429 1_555 D SG CYS 431 D CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf16 D SG CYS 710 D CYS 729 1_555 D SG CYS 765 D CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
covale ? covale1 A ND2 ASN 40 A ASN 61 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 C ND2 ASN 40 C ASN 61 1_555 K C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale3 D ND2 ASN 652 D ASN 671 1_555 N C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
#
_chem_comp.formula           'C22 H29 N O2' 
_chem_comp.formula_weight    339.471 
_chem_comp.id                QEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(1R,2S)-3-(4-benzylpiperidin-1-yl)-1-hydroxy-2-methylpropyl]phenol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C QEM doub 339 n y 
C C16 QEM sing 340 n y 
C H QEM sing 341 n n 
C10 N QEM sing 342 n n 
N C13 QEM sing 343 n n 
N C11 QEM sing 344 n n 
O C20 QEM sing 345 n n 
O HO QEM sing 346 n n 
C02 C01 QEM doub 347 n y 
C01 C06 QEM sing 348 n y 
C01 H01 QEM sing 349 n n 
C15 O01 QEM sing 350 n n 
O01 HO01 QEM sing 351 n n 
C07 C02 QEM sing 352 n n 
C02 C03 QEM sing 353 n y 
C03 C04 QEM doub 354 n y 
C03 H03 QEM sing 355 n n 
C04 C05 QEM sing 356 n y 
C04 H04 QEM sing 357 n n 
C06 C05 QEM doub 358 n y 
C05 H05 QEM sing 359 n n 
C06 H06 QEM sing 360 n n 
C07 C08 QEM sing 361 n n 
C07 H07 QEM sing 362 n n 
C07 H07A QEM sing 363 n n 
C09 C08 QEM sing 364 n n 
C08 C12 QEM sing 365 n n 
C08 H08 QEM sing 366 n n 
C09 C10 QEM sing 367 n n 
C09 H09 QEM sing 368 n n 
C09 H09A QEM sing 369 n n 
C10 H10 QEM sing 370 n n 
C10 H10A QEM sing 371 n n 
C12 C11 QEM sing 372 n n 
C11 H11 QEM sing 373 n n 
C11 H11A QEM sing 374 n n 
C12 H12 QEM sing 375 n n 
C12 H12A QEM sing 376 n n 
C14 C13 QEM sing 377 n n 
C13 H13 QEM sing 378 n n 
C13 H13A QEM sing 379 n n 
C17 C14 QEM sing 380 n n 
C14 C15 QEM sing 381 n n 
C14 H14 QEM sing 382 n n 
C16 C15 QEM sing 383 n n 
C15 H15 QEM sing 384 n n 
C16 C18 QEM doub 385 n y 
C17 H17 QEM sing 386 n n 
C17 H17A QEM sing 387 n n 
C17 H17B QEM sing 388 n n 
C19 C18 QEM sing 389 n y 
C18 H18 QEM sing 390 n n 
C20 C19 QEM doub 391 n y 
C19 H19 QEM sing 392 n n 
C21 C20 QEM sing 393 n y 
C21 H21 QEM sing 394 n n 
#
_atom_sites.entry_id                     4TLM 
_atom_sites.fract_transf_matrix[1][1]    0.004914 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001209 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004545 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 901 995 NAG NAG . 
F 3 NAG A 1 902 996 NAG NAG . 
G 3 NAG A 1 903 997 NAG NAG . 
H 4 1AC A 1 904 2001 1AC 1AC . 
I 5 QEM A 1 905 899 QEM QEM . 
J 3 NAG B 1 901 995 NAG NAG . 
K 3 NAG C 1 901 995 NAG NAG . 
L 3 NAG C 1 902 996 NAG NAG . 
M 5 QEM C 1 903 899 QEM QEM . 
N 3 NAG D 1 901 995 NAG NAG . 
O 6 JEG D 1 902 2001 JEG JEG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C QEM . . . M 5 23.451 14.955 250.906 1 139.44 ? C QEM 903 C 1 
HETATM 2 N N QEM . . . M 5 28.237 16.011 253.016 1 94.62 ? N QEM 903 C 1 
HETATM 3 O O QEM . . . M 5 19.9 14.144 251.52 1 157.75 ? O QEM 903 C 1 
HETATM 4 C C01 QEM . . . M 5 33.164 18.513 253.736 1 107.07 ? C01 QEM 903 C 1 
HETATM 5 O O01 QEM . . . M 5 25.949 12.665 252.313 1 126.19 ? O01 QEM 903 C 1 
HETATM 6 C C02 QEM . . . M 5 33.085 18.209 252.384 1 103.43 ? C02 QEM 903 C 1 
HETATM 7 C C03 QEM . . . M 5 34.231 17.857 251.688 1 88.43 ? C03 QEM 903 C 1 
HETATM 8 C C04 QEM . . . M 5 35.455 17.797 252.339 1 74.04 ? C04 QEM 903 C 1 
HETATM 9 C C05 QEM . . . M 5 35.53 18.096 253.687 1 83.03 ? C05 QEM 903 C 1 
HETATM 10 C C06 QEM . . . M 5 34.387 18.452 254.387 1 99.94 ? C06 QEM 903 C 1 
HETATM 11 C C07 QEM . . . M 5 31.743 18.276 251.653 1 100.53 ? C07 QEM 903 C 1 
HETATM 12 C C08 QEM . . . M 5 30.587 17.604 252.491 1 84.29 ? C08 QEM 903 C 1 
HETATM 13 C C09 QEM . . . M 5 29.288 17.994 251.897 1 92.64 ? C09 QEM 903 C 1 
HETATM 14 C C10 QEM . . . M 5 28.135 17.448 252.712 1 100.22 ? C10 QEM 903 C 1 
HETATM 15 C C11 QEM . . . M 5 29.605 15.494 253.294 1 86.24 ? C11 QEM 903 C 1 
HETATM 16 C C12 QEM . . . M 5 30.709 16.145 252.477 1 85.21 ? C12 QEM 903 C 1 
HETATM 17 C C13 QEM . . . M 5 27.584 15.229 251.989 1 94.52 ? C13 QEM 903 C 1 
HETATM 18 C C14 QEM . . . M 5 26.119 15.038 252.365 1 104.64 ? C14 QEM 903 C 1 
HETATM 19 C C15 QEM . . . M 5 25.571 13.847 251.629 1 117.78 ? C15 QEM 903 C 1 
HETATM 20 C C16 QEM . . . M 5 24.075 13.93 251.598 1 131.79 ? C16 QEM 903 C 1 
HETATM 21 C C17 QEM . . . M 5 25.991 14.793 253.852 1 113.21 ? C17 QEM 903 C 1 
HETATM 22 C C18 QEM . . . M 5 23.324 12.976 252.263 1 142.53 ? C18 QEM 903 C 1 
HETATM 23 C C19 QEM . . . M 5 21.94 13.047 252.236 1 146.94 ? C19 QEM 903 C 1 
HETATM 24 C C20 QEM . . . M 5 21.312 14.072 251.546 1 151.15 ? C20 QEM 903 C 1 
HETATM 25 C C21 QEM . . . M 5 22.066 15.027 250.88 1 144.45 ? C21 QEM 903 C 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    58 
_model_server_stats.query_time_ms           613 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           25 
#