data_4TLM # _model_server_result.job_id nHuFVS_xfWsDHqyVVIxPyw _model_server_result.datetime_utc '2024-11-13 22:29:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":905}' # _entry.id 4TLM # _exptl.entry_id 4TLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.471 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(1R,2S)-3-(4-benzylpiperidin-1-yl)-1-hydroxy-2-methylpropyl]phenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.82 _cell.angle_gamma 90 _cell.entry_id 4TLM _cell.length_a 203.49 _cell.length_b 118.43 _cell.length_c 226.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 79 1_555 A SG CYS 287 A CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 399 A CYS 420 1_555 A SG CYS 431 A CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 415 A CYS 436 1_555 A SG CYS 432 A CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 713 A CYS 734 1_555 A SG CYS 767 A CYS 788 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 62 B CYS 81 1_555 B SG CYS 297 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 197 B CYS 216 1_555 D SG CYS 197 D CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 403 B CYS 422 1_555 B SG CYS 430 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 B SG CYS 410 B CYS 429 1_555 B SG CYS 431 B CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 710 B CYS 729 1_555 B SG CYS 765 B CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 C SG CYS 58 C CYS 79 1_555 C SG CYS 287 C CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 C SG CYS 399 C CYS 420 1_555 C SG CYS 431 C CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 415 C CYS 436 1_555 C SG CYS 432 C CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 D SG CYS 62 D CYS 81 1_555 D SG CYS 297 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 D SG CYS 403 D CYS 422 1_555 D SG CYS 430 D CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf15 D SG CYS 410 D CYS 429 1_555 D SG CYS 431 D CYS 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 D SG CYS 710 D CYS 729 1_555 D SG CYS 765 D CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 40 A ASN 61 1_555 E C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 C ND2 ASN 40 C ASN 61 1_555 K C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 D ND2 ASN 652 D ASN 671 1_555 N C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C22 H29 N O2' _chem_comp.formula_weight 339.471 _chem_comp.id QEM _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(1R,2S)-3-(4-benzylpiperidin-1-yl)-1-hydroxy-2-methylpropyl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C QEM doub 339 n y C C16 QEM sing 340 n y C H QEM sing 341 n n C10 N QEM sing 342 n n N C13 QEM sing 343 n n N C11 QEM sing 344 n n O C20 QEM sing 345 n n O HO QEM sing 346 n n C02 C01 QEM doub 347 n y C01 C06 QEM sing 348 n y C01 H01 QEM sing 349 n n C15 O01 QEM sing 350 n n O01 HO01 QEM sing 351 n n C07 C02 QEM sing 352 n n C02 C03 QEM sing 353 n y C03 C04 QEM doub 354 n y C03 H03 QEM sing 355 n n C04 C05 QEM sing 356 n y C04 H04 QEM sing 357 n n C06 C05 QEM doub 358 n y C05 H05 QEM sing 359 n n C06 H06 QEM sing 360 n n C07 C08 QEM sing 361 n n C07 H07 QEM sing 362 n n C07 H07A QEM sing 363 n n C09 C08 QEM sing 364 n n C08 C12 QEM sing 365 n n C08 H08 QEM sing 366 n n C09 C10 QEM sing 367 n n C09 H09 QEM sing 368 n n C09 H09A QEM sing 369 n n C10 H10 QEM sing 370 n n C10 H10A QEM sing 371 n n C12 C11 QEM sing 372 n n C11 H11 QEM sing 373 n n C11 H11A QEM sing 374 n n C12 H12 QEM sing 375 n n C12 H12A QEM sing 376 n n C14 C13 QEM sing 377 n n C13 H13 QEM sing 378 n n C13 H13A QEM sing 379 n n C17 C14 QEM sing 380 n n C14 C15 QEM sing 381 n n C14 H14 QEM sing 382 n n C16 C15 QEM sing 383 n n C15 H15 QEM sing 384 n n C16 C18 QEM doub 385 n y C17 H17 QEM sing 386 n n C17 H17A QEM sing 387 n n C17 H17B QEM sing 388 n n C19 C18 QEM sing 389 n y C18 H18 QEM sing 390 n n C20 C19 QEM doub 391 n y C19 H19 QEM sing 392 n n C21 C20 QEM sing 393 n y C21 H21 QEM sing 394 n n # _atom_sites.entry_id 4TLM _atom_sites.fract_transf_matrix[1][1] 0.004914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001209 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 901 995 NAG NAG . F 3 NAG A 1 902 996 NAG NAG . G 3 NAG A 1 903 997 NAG NAG . H 4 1AC A 1 904 2001 1AC 1AC . I 5 QEM A 1 905 899 QEM QEM . J 3 NAG B 1 901 995 NAG NAG . K 3 NAG C 1 901 995 NAG NAG . L 3 NAG C 1 902 996 NAG NAG . M 5 QEM C 1 903 899 QEM QEM . N 3 NAG D 1 901 995 NAG NAG . O 6 JEG D 1 902 2001 JEG JEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C QEM . . . I 5 -9.233 2.855 221.846 1 56.52 ? C QEM 905 A 1 HETATM 2 N N QEM . . . I 5 -11.706 1.721 217.293 1 22.37 ? N QEM 905 A 1 HETATM 3 O O QEM . . . I 5 -9.094 3.71 225.437 1 49.25 ? O QEM 905 A 1 HETATM 4 C C01 QEM . . . I 5 -12.628 -0.281 212.263 1 37.78 ? C01 QEM 905 A 1 HETATM 5 O O01 QEM . . . I 5 -11.499 4.892 219.829 1 59.12 ? O01 QEM 905 A 1 HETATM 6 C C02 QEM . . . I 5 -11.316 0.147 212.123 1 37.96 ? C02 QEM 905 A 1 HETATM 7 C C03 QEM . . . I 5 -10.784 0.342 210.858 1 58.59 ? C03 QEM 905 A 1 HETATM 8 C C04 QEM . . . I 5 -11.548 0.12 209.721 1 0 ? C04 QEM 905 A 1 HETATM 9 C C05 QEM . . . I 5 -12.859 -0.301 209.862 1 22.29 ? C05 QEM 905 A 1 HETATM 10 C C06 QEM . . . I 5 -13.398 -0.501 211.128 1 41.78 ? C06 QEM 905 A 1 HETATM 11 C C07 QEM . . . I 5 -10.417 0.407 213.328 1 28.51 ? C07 QEM 905 A 1 HETATM 12 C C08 QEM . . . I 5 -11.195 0.568 214.687 1 11.07 ? C08 QEM 905 A 1 HETATM 13 C C09 QEM . . . I 5 -10.163 0.489 215.748 1 25.09 ? C09 QEM 905 A 1 HETATM 14 C C10 QEM . . . I 5 -10.763 0.602 217.135 1 26.93 ? C10 QEM 905 A 1 HETATM 15 C C11 QEM . . . I 5 -12.549 2.059 216.115 1 21.82 ? C11 QEM 905 A 1 HETATM 16 C C12 QEM . . . I 5 -11.874 1.864 214.767 1 9.77 ? C12 QEM 905 A 1 HETATM 17 C C13 QEM . . . I 5 -11.042 2.888 217.832 1 27.18 ? C13 QEM 905 A 1 HETATM 18 C C14 QEM . . . I 5 -10.785 2.676 219.319 1 24.01 ? C14 QEM 905 A 1 HETATM 19 C C15 QEM . . . I 5 -10.405 3.997 219.924 1 28.84 ? C15 QEM 905 A 1 HETATM 20 C C16 QEM . . . I 5 -10.037 3.879 221.37 1 31.22 ? C16 QEM 905 A 1 HETATM 21 C C17 QEM . . . I 5 -12.028 2.149 219.996 1 34.03 ? C17 QEM 905 A 1 HETATM 22 C C18 QEM . . . I 5 -10.522 4.839 222.235 1 39.97 ? C18 QEM 905 A 1 HETATM 23 C C19 QEM . . . I 5 -10.204 4.783 223.584 1 61.82 ? C19 QEM 905 A 1 HETATM 24 C C20 QEM . . . I 5 -9.4 3.763 224.061 1 57.53 ? C20 QEM 905 A 1 HETATM 25 C C21 QEM . . . I 5 -8.916 2.793 223.199 1 62.75 ? C21 QEM 905 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #