data_4TNR
#
_model_server_result.job_id            BJQYvogEtdEkWIA9pa_WdA 
_model_server_result.datetime_utc      '2024-11-07 00:42:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4tnr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":704}' 
#
_entry.id    4TNR 
#
_exptl.entry_id    4TNR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.4 
_cell.angle_gamma         90 
_cell.entry_id            4TNR 
_cell.length_a            84.916 
_cell.length_b            141.697 
_cell.length_c            97.524 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TNR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 L N N 
? 2 M N N 
? 2 P N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O3G GTP . D GTP 702 1_555 Q MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc2 F O2B GTP . D GTP 702 1_555 Q MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? 
metalc ? metalc3 F O2A GTP . D GTP 702 1_555 Q MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc4 G O1G DTP . D DTP 703 1_555 J MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? 
metalc ? metalc5 G O1B DTP . D DTP 703 1_555 J MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc6 H MG MG . D MG 704 1_555 L O3G DTP . C DTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc7 H MG MG . D MG 704 1_555 L O1B DTP . C DTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? 
metalc ? metalc8 H MG MG . D MG 704 1_555 U O HOH . C HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc9 H MG MG . D MG 704 1_555 S O3G GTP . A GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc10 H MG MG . D MG 704 1_555 S O2B GTP . A GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc11 H MG MG . D MG 704 1_555 S O1A GTP . A GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc12 J MG MG . C MG 702 1_555 K O3G GTP . C GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc13 J MG MG . C MG 702 1_555 K O2B GTP . C GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc14 J MG MG . C MG 702 1_555 K O2A GTP . C GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? 
metalc ? metalc15 M O3G DTP . B DTP 701 1_555 Q MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? 
metalc ? metalc16 M O1B DTP . B DTP 701 1_555 Q MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc17 N MG MG . B MG 702 1_555 O O2B GTP . B GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc18 N MG MG . B MG 702 1_555 O O1A GTP . B GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc19 N MG MG . B MG 702 1_555 O O3G GTP . B GTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? 
metalc ? metalc20 N MG MG . B MG 702 1_555 R O1B DTP . A DTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc21 N MG MG . B MG 702 1_555 R O2G DTP . A DTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc22 N MG MG . B MG 702 1_555 W O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc23 V O HOH . B HOH 801 1_555 Q MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                DTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G DTP doub 83 n n 
PG O2G DTP sing 84 n n 
PG O3G DTP sing 85 n n 
PG O3B DTP sing 86 n n 
O2G HOG2 DTP sing 87 n n 
O3G HOG3 DTP sing 88 n n 
PB O1B DTP doub 89 n n 
PB O2B DTP sing 90 n n 
PB O3B DTP sing 91 n n 
PB O3A DTP sing 92 n n 
O2B HOB2 DTP sing 93 n n 
PA O1A DTP doub 94 n n 
PA O2A DTP sing 95 n n 
PA O3A DTP sing 96 n n 
PA O5' DTP sing 97 n n 
O2A HOA2 DTP sing 98 n n 
O5' C5' DTP sing 99 n n 
C5' C4' DTP sing 100 n n 
C5' "H5'1" DTP sing 101 n n 
C5' "H5'2" DTP sing 102 n n 
C4' O4' DTP sing 103 n n 
C4' C3' DTP sing 104 n n 
C4' H4' DTP sing 105 n n 
O4' C1' DTP sing 106 n n 
C3' O3' DTP sing 107 n n 
C3' C2' DTP sing 108 n n 
C3' H3' DTP sing 109 n n 
O3' HO3' DTP sing 110 n n 
C2' C1' DTP sing 111 n n 
C2' "H2'1" DTP sing 112 n n 
C2' "H2'2" DTP sing 113 n n 
C1' N9 DTP sing 114 n n 
C1' H1' DTP sing 115 n n 
N9 C8 DTP sing 116 n y 
N9 C4 DTP sing 117 n y 
C8 N7 DTP doub 118 n y 
C8 H8 DTP sing 119 n n 
N7 C5 DTP sing 120 n y 
C5 C6 DTP sing 121 n y 
C5 C4 DTP doub 122 n y 
C6 N6 DTP sing 123 n n 
C6 N1 DTP doub 124 n y 
N6 HN61 DTP sing 125 n n 
N6 HN62 DTP sing 126 n n 
N1 C2 DTP sing 127 n y 
C2 N3 DTP doub 128 n y 
C2 H2 DTP sing 129 n n 
N3 C4 DTP sing 130 n y 
#
_atom_sites.entry_id                     4TNR 
_atom_sites.fract_transf_matrix[1][1]    0.011776 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005591 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007057 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011351 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 DTP D 1 701 700 DTP DTP . 
F 3 GTP D 1 702 900 GTP GTP . 
G 2 DTP D 1 703 800 DTP DTP . 
H 4 MG D 1 704 850 MG MG . 
I 2 DTP C 1 701 700 DTP DTP . 
J 4 MG C 1 702 850 MG MG . 
K 3 GTP C 1 703 900 GTP GTP . 
L 2 DTP C 1 704 800 DTP DTP . 
M 2 DTP B 1 701 800 DTP DTP . 
N 4 MG B 1 702 850 MG MG . 
O 3 GTP B 1 703 900 GTP GTP . 
P 2 DTP B 1 704 700 DTP DTP . 
Q 4 MG A 1 701 850 MG MG . 
R 2 DTP A 1 702 800 DTP DTP . 
S 3 GTP A 1 703 900 GTP GTP . 
T 5 HOH D 1 801 4 HOH HOH . 
T 5 HOH D 2 802 5 HOH HOH . 
T 5 HOH D 3 803 6 HOH HOH . 
T 5 HOH D 4 804 12 HOH HOH . 
T 5 HOH D 5 805 14 HOH HOH . 
T 5 HOH D 6 806 15 HOH HOH . 
T 5 HOH D 7 807 19 HOH HOH . 
T 5 HOH D 8 808 21 HOH HOH . 
U 5 HOH C 1 801 9 HOH HOH . 
U 5 HOH C 2 802 10 HOH HOH . 
V 5 HOH B 1 801 1 HOH HOH . 
V 5 HOH B 2 802 2 HOH HOH . 
V 5 HOH B 3 803 7 HOH HOH . 
V 5 HOH B 4 804 8 HOH HOH . 
V 5 HOH B 5 805 13 HOH HOH . 
V 5 HOH B 6 806 16 HOH HOH . 
V 5 HOH B 7 807 17 HOH HOH . 
V 5 HOH B 8 808 18 HOH HOH . 
V 5 HOH B 9 809 20 HOH HOH . 
W 5 HOH A 1 801 3 HOH HOH . 
W 5 HOH A 2 802 11 HOH HOH . 
W 5 HOH A 3 803 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DTP . . . P 2 -3.465 2.263 58.482 1 107.38 ? PG DTP 704 B 1 
HETATM 2 O O1G DTP . . . P 2 -4.251 3.49 58.831 1 99.54 ? O1G DTP 704 B 1 
HETATM 3 O O2G DTP . . . P 2 -4.281 1.047 58.072 1 106.63 ? O2G DTP 704 B 1 
HETATM 4 O O3G DTP . . . P 2 -2.338 2.018 59.439 1 103.05 ? O3G DTP 704 B 1 
HETATM 5 P PB DTP . . . P 2 -3.451 2.891 55.691 1 139.57 ? PB DTP 704 B 1 
HETATM 6 O O1B DTP . . . P 2 -3.193 4.272 55.114 1 139.97 ? O1B DTP 704 B 1 
HETATM 7 O O2B DTP . . . P 2 -3.159 1.697 54.823 1 138.29 ? O2B DTP 704 B 1 
HETATM 8 O O3B DTP . . . P 2 -2.689 2.681 57.114 1 124.49 ? O3B DTP 704 B 1 
HETATM 9 P PA DTP . . . P 2 -6.237 2.744 55.078 1 148.15 ? PA DTP 704 B 1 
HETATM 10 O O1A DTP . . . P 2 -5.699 3.023 53.676 1 141.27 ? O1A DTP 704 B 1 
HETATM 11 O O2A DTP . . . P 2 -7.429 3.531 55.592 1 144.32 ? O2A DTP 704 B 1 
HETATM 12 O O3A DTP . . . P 2 -5.011 2.837 56.134 1 146.16 ? O3A DTP 704 B 1 
HETATM 13 O O5' DTP . . . P 2 -6.619 1.188 55.271 1 126.28 ? O5' DTP 704 B 1 
HETATM 14 C C5' DTP . . . P 2 -7.077 0.671 56.517 1 110.11 ? C5' DTP 704 B 1 
HETATM 15 C C4' DTP . . . P 2 -8.159 -0.339 56.213 1 102.96 ? C4' DTP 704 B 1 
HETATM 16 O O4' DTP . . . P 2 -7.596 -1.41 55.453 1 109.22 ? O4' DTP 704 B 1 
HETATM 17 C C3' DTP . . . P 2 -8.753 -0.956 57.453 1 93.21 ? C3' DTP 704 B 1 
HETATM 18 O O3' DTP . . . P 2 -10.17 -1.049 57.291 1 81.16 ? O3' DTP 704 B 1 
HETATM 19 C C2' DTP . . . P 2 -8.117 -2.312 57.568 1 96.58 ? C2' DTP 704 B 1 
HETATM 20 C C1' DTP . . . P 2 -7.666 -2.658 56.164 1 108.94 ? C1' DTP 704 B 1 
HETATM 21 N N9 DTP . . . P 2 -6.339 -3.339 56.111 1 120.88 ? N9 DTP 704 B 1 
HETATM 22 C C8 DTP . . . P 2 -5.153 -2.781 56.457 1 126.05 ? C8 DTP 704 B 1 
HETATM 23 N N7 DTP . . . P 2 -4.12 -3.663 56.26 1 128.18 ? N7 DTP 704 B 1 
HETATM 24 C C5 DTP . . . P 2 -4.65 -4.82 55.781 1 132.14 ? C5 DTP 704 B 1 
HETATM 25 C C6 DTP . . . P 2 -4.137 -6.17 55.363 1 132.16 ? C6 DTP 704 B 1 
HETATM 26 N N6 DTP . . . P 2 -2.811 -6.482 55.407 1 129.5 ? N6 DTP 704 B 1 
HETATM 27 N N1 DTP . . . P 2 -5.05 -7.087 54.927 1 131.28 ? N1 DTP 704 B 1 
HETATM 28 C C2 DTP . . . P 2 -6.371 -6.817 54.853 1 127.78 ? C2 DTP 704 B 1 
HETATM 29 N N3 DTP . . . P 2 -6.902 -5.623 55.213 1 127.45 ? N3 DTP 704 B 1 
HETATM 30 C C4 DTP . . . P 2 -6.118 -4.597 55.675 1 127.61 ? C4 DTP 704 B 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    85 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           30 
#