data_4TNY
#
_model_server_result.job_id            KQDpyhZaWECxuMV0ArcXiQ 
_model_server_result.datetime_utc      '2024-11-06 22:38:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4tny 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":702}' 
#
_entry.id    4TNY 
#
_exptl.entry_id    4TNY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.38 
_cell.angle_gamma         90 
_cell.entry_id            4TNY 
_cell.length_a            86.253 
_cell.length_b            141.874 
_cell.length_c            98.333 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TNY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 O N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O3G DTP . A DTP 702 1_555 L MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc2 F O1B DTP . A DTP 702 1_555 L MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc3 G MG MG . A MG 703 1_555 O O1B DTP . B DTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? 
metalc ? metalc4 G MG MG . A MG 703 1_555 T O2G DGT . D DGT 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc5 G MG MG . A MG 703 1_555 T O1B DGT . D DGT 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? 
metalc ? metalc6 G MG MG . A MG 703 1_555 T O2A DGT . D DGT 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc7 G MG MG . A MG 703 1_555 X O HOH . D HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc8 U O HOH . A HOH 801 1_555 L MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? 
metalc ? metalc9 H O3G DTP . C DTP 701 1_555 P MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc10 H O1B DTP . C DTP 701 1_555 P MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc11 J O1B DGT . C DGT 703 1_555 L MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc12 J O2A DGT . C DGT 703 1_555 L MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc13 K MG MG . C MG 704 1_555 N O2G DGT . B DGT 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? 
metalc ? metalc14 K MG MG . C MG 704 1_555 N O1B DGT . B DGT 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc15 K MG MG . C MG 704 1_555 N O2A DGT . B DGT 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc16 K MG MG . C MG 704 1_555 W O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? 
metalc ? metalc17 K MG MG . C MG 704 1_555 R O1B DTP . D DTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc18 K MG MG . C MG 704 1_555 R O3G DTP . D DTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.701 ? 
metalc ? metalc19 P MG MG . D MG 701 1_555 Q O1B DGT . D DGT 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc20 P MG MG . D MG 701 1_555 Q O2G DGT . D DGT 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
metalc ? metalc21 P MG MG . D MG 701 1_555 Q O2A DGT . D DGT 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc22 P MG MG . D MG 701 1_555 X O HOH . D HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                DTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G DTP doub 132 n n 
PG O2G DTP sing 133 n n 
PG O3G DTP sing 134 n n 
PG O3B DTP sing 135 n n 
O2G HOG2 DTP sing 136 n n 
O3G HOG3 DTP sing 137 n n 
PB O1B DTP doub 138 n n 
PB O2B DTP sing 139 n n 
PB O3B DTP sing 140 n n 
PB O3A DTP sing 141 n n 
O2B HOB2 DTP sing 142 n n 
PA O1A DTP doub 143 n n 
PA O2A DTP sing 144 n n 
PA O3A DTP sing 145 n n 
PA O5' DTP sing 146 n n 
O2A HOA2 DTP sing 147 n n 
O5' C5' DTP sing 148 n n 
C5' C4' DTP sing 149 n n 
C5' "H5'1" DTP sing 150 n n 
C5' "H5'2" DTP sing 151 n n 
C4' O4' DTP sing 152 n n 
C4' C3' DTP sing 153 n n 
C4' H4' DTP sing 154 n n 
O4' C1' DTP sing 155 n n 
C3' O3' DTP sing 156 n n 
C3' C2' DTP sing 157 n n 
C3' H3' DTP sing 158 n n 
O3' HO3' DTP sing 159 n n 
C2' C1' DTP sing 160 n n 
C2' "H2'1" DTP sing 161 n n 
C2' "H2'2" DTP sing 162 n n 
C1' N9 DTP sing 163 n n 
C1' H1' DTP sing 164 n n 
N9 C8 DTP sing 165 n y 
N9 C4 DTP sing 166 n y 
C8 N7 DTP doub 167 n y 
C8 H8 DTP sing 168 n n 
N7 C5 DTP sing 169 n y 
C5 C6 DTP sing 170 n y 
C5 C4 DTP doub 171 n y 
C6 N6 DTP sing 172 n n 
C6 N1 DTP doub 173 n y 
N6 HN61 DTP sing 174 n n 
N6 HN62 DTP sing 175 n n 
N1 C2 DTP sing 176 n y 
C2 N3 DTP doub 177 n y 
C2 H2 DTP sing 178 n n 
N3 C4 DTP sing 179 n y 
#
_atom_sites.entry_id                     4TNY 
_atom_sites.fract_transf_matrix[1][1]    0.011594 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005751 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007049 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011352 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 DGT A 1 701 700 DGT DGT . 
F 3 DTP A 1 702 800 DTP DTP . 
G 4 MG A 1 703 850 MG MG . 
H 3 DTP C 1 701 800 DTP DTP . 
I 2 DGT C 1 702 700 DGT DGT . 
J 2 DGT C 1 703 900 DGT DGT . 
K 4 MG C 1 704 850 MG MG . 
L 4 MG B 1 701 850 MG MG . 
M 2 DGT B 1 702 700 DGT DGT . 
N 2 DGT B 1 703 900 DGT DGT . 
O 3 DTP B 1 704 800 DTP DTP . 
P 4 MG D 1 701 850 MG MG . 
Q 2 DGT D 1 702 900 DGT DGT . 
R 3 DTP D 1 703 800 DTP DTP . 
S 2 DGT D 1 704 700 DGT DGT . 
T 2 DGT D 1 705 900 DGT DGT . 
U 5 HOH A 1 801 6 HOH HOH . 
U 5 HOH A 2 802 8 HOH HOH . 
U 5 HOH A 3 803 9 HOH HOH . 
U 5 HOH A 4 804 10 HOH HOH . 
U 5 HOH A 5 805 11 HOH HOH . 
U 5 HOH A 6 806 13 HOH HOH . 
U 5 HOH A 7 807 14 HOH HOH . 
V 5 HOH C 1 801 7 HOH HOH . 
V 5 HOH C 2 802 12 HOH HOH . 
V 5 HOH C 3 803 15 HOH HOH . 
W 5 HOH B 1 801 5 HOH HOH . 
X 5 HOH D 1 801 1 HOH HOH . 
X 5 HOH D 2 802 2 HOH HOH . 
X 5 HOH D 3 803 3 HOH HOH . 
X 5 HOH D 4 804 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DTP . . . F 3 7.714 22.137 -24.484 1 27.27 ? PG DTP 702 A 1 
HETATM 2 O O1G DTP . . . F 3 6.242 21.881 -24.512 1 26.93 ? O1G DTP 702 A 1 
HETATM 3 O O2G DTP . . . F 3 8.359 22.699 -23.268 1 27.71 ? O2G DTP 702 A 1 
HETATM 4 O O3G DTP . . . F 3 8.239 22.891 -25.675 1 27.78 ? O3G DTP 702 A 1 
HETATM 5 P PB DTP . . . F 3 9.074 19.889 -25.588 1 24.51 ? PB DTP 702 A 1 
HETATM 6 O O1B DTP . . . F 3 9.733 20.961 -26.418 1 24.71 ? O1B DTP 702 A 1 
HETATM 7 O O2B DTP . . . F 3 8.338 18.801 -26.306 1 24.81 ? O2B DTP 702 A 1 
HETATM 8 O O3B DTP . . . F 3 8.173 20.586 -24.447 1 25.36 ? O3B DTP 702 A 1 
HETATM 9 P PA DTP . . . F 3 10.052 17.951 -23.795 1 23.19 ? PA DTP 702 A 1 
HETATM 10 O O1A DTP . . . F 3 10.01 18.565 -22.47 1 24.14 ? O1A DTP 702 A 1 
HETATM 11 O O2A DTP . . . F 3 9.054 16.943 -24.256 1 23.97 ? O2A DTP 702 A 1 
HETATM 12 O O3A DTP . . . F 3 10.251 19.182 -24.779 1 24.3 ? O3A DTP 702 A 1 
HETATM 13 O O5' DTP . . . F 3 11.427 17.225 -23.581 1 24.84 ? O5' DTP 702 A 1 
HETATM 14 C C5' DTP . . . F 3 12.505 17.466 -24.435 1 26.59 ? C5' DTP 702 A 1 
HETATM 15 C C4' DTP . . . F 3 13.581 16.416 -24.207 1 27.23 ? C4' DTP 702 A 1 
HETATM 16 O O4' DTP . . . F 3 13.279 15.565 -23.094 1 26.79 ? O4' DTP 702 A 1 
HETATM 17 C C3' DTP . . . F 3 13.717 15.549 -25.45 1 27.04 ? C3' DTP 702 A 1 
HETATM 18 O O3' DTP . . . F 3 15.102 15.301 -25.612 1 24.63 ? O3' DTP 702 A 1 
HETATM 19 C C2' DTP . . . F 3 12.922 14.305 -25.131 1 29.53 ? C2' DTP 702 A 1 
HETATM 20 C C1' DTP . . . F 3 13.053 14.246 -23.603 1 30.47 ? C1' DTP 702 A 1 
HETATM 21 N N9 DTP . . . F 3 11.882 13.786 -22.845 1 31.79 ? N9 DTP 702 A 1 
HETATM 22 C C8 DTP . . . F 3 10.6 14.078 -23.056 1 30.66 ? C8 DTP 702 A 1 
HETATM 23 N N7 DTP . . . F 3 9.859 13.484 -22.092 1 32.08 ? N7 DTP 702 A 1 
HETATM 24 C C5 DTP . . . F 3 10.686 12.817 -21.264 1 32.46 ? C5 DTP 702 A 1 
HETATM 25 C C6 DTP . . . F 3 10.6 12.008 -20.05 1 32.79 ? C6 DTP 702 A 1 
HETATM 26 N N6 DTP . . . F 3 9.432 11.732 -19.441 1 34.72 ? N6 DTP 702 A 1 
HETATM 27 N N1 DTP . . . F 3 11.753 11.525 -19.556 1 34.98 ? N1 DTP 702 A 1 
HETATM 28 C C2 DTP . . . F 3 12.977 11.741 -20.059 1 33.3 ? C2 DTP 702 A 1 
HETATM 29 N N3 DTP . . . F 3 13.123 12.476 -21.141 1 33.69 ? N3 DTP 702 A 1 
HETATM 30 C C4 DTP . . . F 3 12.036 13.021 -21.766 1 33.59 ? C4 DTP 702 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           30 
#