data_4TO0 # _model_server_result.job_id mu1Z_Xrwa4SKRXdKWhd26w _model_server_result.datetime_utc '2024-11-07 00:38:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4to0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":705}' # _entry.id 4TO0 # _exptl.entry_id 4TO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.58 _cell.angle_gamma 90 _cell.entry_id 4TO0 _cell.length_a 81.418 _cell.length_b 141.329 _cell.length_c 97.519 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 N N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O3G GTP . A GTP 702 1_555 Q MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? metalc ? metalc2 F O2B GTP . A GTP 702 1_555 Q MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc3 F O1A GTP . A GTP 702 1_555 Q MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc4 G O3G DTP . A DTP 703 1_555 H MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc5 G O1B DTP . A DTP 703 1_555 H MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 H MG MG . A MG 704 1_555 U O HOH . A HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc7 H MG MG . A MG 704 1_555 P O1A GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc8 H MG MG . A MG 704 1_555 P O3G GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc9 H MG MG . A MG 704 1_555 P O2B GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc10 I MG MG . A MG 705 1_555 S O2G DTP . D DTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? metalc ? metalc11 I MG MG . A MG 705 1_555 S O1B DTP . D DTP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc12 I MG MG . A MG 705 1_555 T O1G GTP . D GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc13 I MG MG . A MG 705 1_555 T O1B GTP . D GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc14 I MG MG . A MG 705 1_555 T O2A GTP . D GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc15 I MG MG . A MG 705 1_555 X O HOH . D HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc16 U O HOH . A HOH 805 1_555 Q MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc17 K O3G DTP . B DTP 702 1_555 N MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc18 K O1B DTP . B DTP 702 1_555 N MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc19 L O1B GTP . B GTP 703 1_555 N MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc20 L O1A GTP . B GTP 703 1_555 N MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc21 V O HOH . B HOH 811 1_555 N MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc22 M O2G DTP . C DTP 701 1_555 Q MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc23 M O2B DTP . C DTP 701 1_555 Q MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4TO0 _atom_sites.fract_transf_matrix[1][1] 0.012282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005619 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DCP A 1 701 700 DCP DCP . F 3 GTP A 1 702 900 GTP GTP . G 4 DTP A 1 703 800 DTP DTP . H 5 MG A 1 704 850 MG MG . I 5 MG A 1 705 850 MG MG . J 2 DCP B 1 701 700 DCP DCP . K 4 DTP B 1 702 800 DTP DTP . L 3 GTP B 1 703 900 GTP GTP . M 4 DTP C 1 701 800 DTP DTP . N 5 MG C 1 702 850 MG MG . O 2 DCP C 1 703 700 DCP DCP . P 3 GTP C 1 704 900 GTP GTP . Q 5 MG D 1 701 850 MG MG . R 2 DCP D 1 702 700 DCP DCP . S 4 DTP D 1 703 800 DTP DTP . T 3 GTP D 1 704 900 GTP GTP . U 6 HOH A 1 801 85 HOH HOH . U 6 HOH A 2 802 109 HOH HOH . U 6 HOH A 3 803 4 HOH HOH . U 6 HOH A 4 804 6 HOH HOH . U 6 HOH A 5 805 10 HOH HOH . U 6 HOH A 6 806 14 HOH HOH . U 6 HOH A 7 807 24 HOH HOH . U 6 HOH A 8 808 26 HOH HOH . U 6 HOH A 9 809 29 HOH HOH . U 6 HOH A 10 810 45 HOH HOH . U 6 HOH A 11 811 47 HOH HOH . U 6 HOH A 12 812 49 HOH HOH . U 6 HOH A 13 813 53 HOH HOH . U 6 HOH A 14 814 55 HOH HOH . U 6 HOH A 15 815 57 HOH HOH . U 6 HOH A 16 816 59 HOH HOH . U 6 HOH A 17 817 63 HOH HOH . U 6 HOH A 18 818 69 HOH HOH . U 6 HOH A 19 819 73 HOH HOH . U 6 HOH A 20 820 74 HOH HOH . U 6 HOH A 21 821 75 HOH HOH . U 6 HOH A 22 822 79 HOH HOH . U 6 HOH A 23 823 80 HOH HOH . U 6 HOH A 24 824 81 HOH HOH . U 6 HOH A 25 825 82 HOH HOH . U 6 HOH A 26 826 86 HOH HOH . U 6 HOH A 27 827 95 HOH HOH . U 6 HOH A 28 828 102 HOH HOH . U 6 HOH A 29 829 131 HOH HOH . U 6 HOH A 30 830 136 HOH HOH . U 6 HOH A 31 831 138 HOH HOH . U 6 HOH A 32 832 151 HOH HOH . V 6 HOH B 1 801 27 HOH HOH . V 6 HOH B 2 802 61 HOH HOH . V 6 HOH B 3 803 2 HOH HOH . V 6 HOH B 4 804 3 HOH HOH . V 6 HOH B 5 805 7 HOH HOH . V 6 HOH B 6 806 13 HOH HOH . V 6 HOH B 7 807 16 HOH HOH . V 6 HOH B 8 808 17 HOH HOH . V 6 HOH B 9 809 21 HOH HOH . V 6 HOH B 10 810 30 HOH HOH . V 6 HOH B 11 811 32 HOH HOH . V 6 HOH B 12 812 35 HOH HOH . V 6 HOH B 13 813 40 HOH HOH . V 6 HOH B 14 814 42 HOH HOH . V 6 HOH B 15 815 44 HOH HOH . V 6 HOH B 16 816 48 HOH HOH . V 6 HOH B 17 817 56 HOH HOH . V 6 HOH B 18 818 58 HOH HOH . V 6 HOH B 19 819 65 HOH HOH . V 6 HOH B 20 820 66 HOH HOH . V 6 HOH B 21 821 67 HOH HOH . V 6 HOH B 22 822 68 HOH HOH . V 6 HOH B 23 823 70 HOH HOH . V 6 HOH B 24 824 71 HOH HOH . V 6 HOH B 25 825 72 HOH HOH . V 6 HOH B 26 826 76 HOH HOH . V 6 HOH B 27 827 83 HOH HOH . V 6 HOH B 28 828 96 HOH HOH . V 6 HOH B 29 829 98 HOH HOH . V 6 HOH B 30 830 107 HOH HOH . V 6 HOH B 31 831 116 HOH HOH . V 6 HOH B 32 832 120 HOH HOH . V 6 HOH B 33 833 122 HOH HOH . V 6 HOH B 34 834 125 HOH HOH . V 6 HOH B 35 835 132 HOH HOH . V 6 HOH B 36 836 137 HOH HOH . V 6 HOH B 37 837 145 HOH HOH . V 6 HOH B 38 838 149 HOH HOH . V 6 HOH B 39 839 153 HOH HOH . V 6 HOH B 40 840 154 HOH HOH . V 6 HOH B 41 841 155 HOH HOH . V 6 HOH B 42 842 156 HOH HOH . W 6 HOH C 1 801 51 HOH HOH . W 6 HOH C 2 802 121 HOH HOH . W 6 HOH C 3 803 54 HOH HOH . W 6 HOH C 4 804 8 HOH HOH . W 6 HOH C 5 805 9 HOH HOH . W 6 HOH C 6 806 11 HOH HOH . W 6 HOH C 7 807 15 HOH HOH . W 6 HOH C 8 808 19 HOH HOH . W 6 HOH C 9 809 22 HOH HOH . W 6 HOH C 10 810 25 HOH HOH . W 6 HOH C 11 811 28 HOH HOH . W 6 HOH C 12 812 31 HOH HOH . W 6 HOH C 13 813 34 HOH HOH . W 6 HOH C 14 814 38 HOH HOH . W 6 HOH C 15 815 39 HOH HOH . W 6 HOH C 16 816 52 HOH HOH . W 6 HOH C 17 817 60 HOH HOH . W 6 HOH C 18 818 62 HOH HOH . W 6 HOH C 19 819 64 HOH HOH . W 6 HOH C 20 820 77 HOH HOH . W 6 HOH C 21 821 89 HOH HOH . W 6 HOH C 22 822 97 HOH HOH . W 6 HOH C 23 823 99 HOH HOH . W 6 HOH C 24 824 101 HOH HOH . W 6 HOH C 25 825 103 HOH HOH . W 6 HOH C 26 826 104 HOH HOH . W 6 HOH C 27 827 105 HOH HOH . W 6 HOH C 28 828 106 HOH HOH . W 6 HOH C 29 829 112 HOH HOH . W 6 HOH C 30 830 113 HOH HOH . W 6 HOH C 31 831 114 HOH HOH . W 6 HOH C 32 832 117 HOH HOH . W 6 HOH C 33 833 124 HOH HOH . W 6 HOH C 34 834 129 HOH HOH . W 6 HOH C 35 835 140 HOH HOH . W 6 HOH C 36 836 150 HOH HOH . W 6 HOH C 37 837 152 HOH HOH . W 6 HOH C 38 838 157 HOH HOH . X 6 HOH D 1 801 1 HOH HOH . X 6 HOH D 2 802 5 HOH HOH . X 6 HOH D 3 803 12 HOH HOH . X 6 HOH D 4 804 18 HOH HOH . X 6 HOH D 5 805 20 HOH HOH . X 6 HOH D 6 806 23 HOH HOH . X 6 HOH D 7 807 33 HOH HOH . X 6 HOH D 8 808 37 HOH HOH . X 6 HOH D 9 809 41 HOH HOH . X 6 HOH D 10 810 43 HOH HOH . X 6 HOH D 11 811 46 HOH HOH . X 6 HOH D 12 812 50 HOH HOH . X 6 HOH D 13 813 78 HOH HOH . X 6 HOH D 14 814 87 HOH HOH . X 6 HOH D 15 815 90 HOH HOH . X 6 HOH D 16 816 91 HOH HOH . X 6 HOH D 17 817 92 HOH HOH . X 6 HOH D 18 818 94 HOH HOH . X 6 HOH D 19 819 100 HOH HOH . X 6 HOH D 20 820 108 HOH HOH . X 6 HOH D 21 821 110 HOH HOH . X 6 HOH D 22 822 123 HOH HOH . X 6 HOH D 23 823 135 HOH HOH . X 6 HOH D 24 824 142 HOH HOH . X 6 HOH D 25 825 146 HOH HOH . X 6 HOH D 26 826 147 HOH HOH . X 6 HOH D 27 827 148 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x 10.777 _atom_site.Cartn_y -16.341 _atom_site.Cartn_z 27.42 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 705 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #