data_4TO1
#
_model_server_result.job_id            jY8GWgR-v4GTFdPxygMd3Q 
_model_server_result.datetime_utc      '2024-11-07 01:33:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4to1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":701}' 
#
_entry.id    4TO1 
#
_exptl.entry_id    4TO1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.79 
_cell.angle_gamma         90 
_cell.entry_id            4TO1 
_cell.length_a            86.204 
_cell.length_b            141.586 
_cell.length_c            98.187 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TO1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 N N N 
? 5 P N N 
? 5 Q N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O3G DTP . A DTP 702 1_555 G MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc2 F O1B DTP . A DTP 702 1_555 G MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc3 G MG MG . A MG 703 1_555 P O2B GTP . C GTP 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc4 G MG MG . A MG 703 1_555 P O1A GTP . C GTP 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc5 G MG MG . A MG 703 1_555 P O3G GTP . C GTP 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
metalc ? metalc6 G MG MG . A MG 703 1_555 W O HOH . C HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc7 H MG MG . A MG 704 1_555 U O HOH . A HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc8 H MG MG . A MG 704 1_555 J O1B DTP . B DTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc9 H MG MG . A MG 704 1_555 J O2G DTP . B DTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.725 ? 
metalc ? metalc10 H MG MG . A MG 704 1_555 T O1G GTP . D GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? 
metalc ? metalc11 H MG MG . A MG 704 1_555 T O1B GTP . D GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc12 H MG MG . A MG 704 1_555 T O2A GTP . D GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc13 K O1B DCP . C DCP 701 1_555 L MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? 
metalc ? metalc14 K O2G DCP . C DCP 701 1_555 L MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc15 L MG MG . C MG 702 1_555 Q O3G GTP . D GTP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc16 L MG MG . C MG 702 1_555 Q O2B GTP . D GTP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc17 L MG MG . C MG 702 1_555 Q O1A GTP . D GTP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc18 L MG MG . C MG 702 1_555 X O HOH . D HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc19 M MG MG . C MG 703 1_555 N O1G GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? 
metalc ? metalc20 M MG MG . C MG 703 1_555 N O1A GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc21 M MG MG . C MG 703 1_555 N O1B GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc22 M MG MG . C MG 703 1_555 W O HOH . C HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc23 M MG MG . C MG 703 1_555 R O2G DCP . D DCP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc24 M MG MG . C MG 703 1_555 R O1B DCP . D DCP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 222 n n 
PG O2G GTP sing 223 n n 
PG O3G GTP sing 224 n n 
PG O3B GTP sing 225 n n 
O2G HOG2 GTP sing 226 n n 
O3G HOG3 GTP sing 227 n n 
O3B PB GTP sing 228 n n 
PB O1B GTP doub 229 n n 
PB O2B GTP sing 230 n n 
PB O3A GTP sing 231 n n 
O2B HOB2 GTP sing 232 n n 
O3A PA GTP sing 233 n n 
PA O1A GTP doub 234 n n 
PA O2A GTP sing 235 n n 
PA O5' GTP sing 236 n n 
O2A HOA2 GTP sing 237 n n 
O5' C5' GTP sing 238 n n 
C5' C4' GTP sing 239 n n 
C5' H5' GTP sing 240 n n 
C5' "H5''" GTP sing 241 n n 
C4' O4' GTP sing 242 n n 
C4' C3' GTP sing 243 n n 
C4' H4' GTP sing 244 n n 
O4' C1' GTP sing 245 n n 
C3' O3' GTP sing 246 n n 
C3' C2' GTP sing 247 n n 
C3' H3' GTP sing 248 n n 
O3' HO3' GTP sing 249 n n 
C2' O2' GTP sing 250 n n 
C2' C1' GTP sing 251 n n 
C2' H2' GTP sing 252 n n 
O2' HO2' GTP sing 253 n n 
C1' N9 GTP sing 254 n n 
C1' H1' GTP sing 255 n n 
N9 C8 GTP sing 256 n y 
N9 C4 GTP sing 257 n y 
C8 N7 GTP doub 258 n y 
C8 H8 GTP sing 259 n n 
N7 C5 GTP sing 260 n y 
C5 C6 GTP sing 261 n n 
C5 C4 GTP doub 262 n y 
C6 O6 GTP doub 263 n n 
C6 N1 GTP sing 264 n n 
N1 C2 GTP sing 265 n n 
N1 HN1 GTP sing 266 n n 
C2 N2 GTP sing 267 n n 
C2 N3 GTP doub 268 n n 
N2 HN21 GTP sing 269 n n 
N2 HN22 GTP sing 270 n n 
N3 C4 GTP sing 271 n n 
#
_atom_sites.entry_id                     4TO1 
_atom_sites.fract_transf_matrix[1][1]    0.0116 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005605 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011311 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 DCP A 1 701 700 DCP DCP . 
F 3 DTP A 1 702 800 DTP DTP . 
G 4 MG A 1 703 850 MG MG . 
H 4 MG A 1 704 850 MG MG . 
I 2 DCP B 1 701 700 DCP DCP . 
J 3 DTP B 1 702 800 DTP DTP . 
K 2 DCP C 1 701 800 DCP DCP . 
L 4 MG C 1 702 850 MG MG . 
M 4 MG C 1 703 850 MG MG . 
N 5 GTP C 1 704 900 GTP GTP . 
O 2 DCP C 1 705 700 DCP DCP . 
P 5 GTP C 1 706 900 GTP GTP . 
Q 5 GTP D 1 701 900 GTP GTP . 
R 2 DCP D 1 702 800 DCP DCP . 
S 2 DCP D 1 703 700 DCP DCP . 
T 5 GTP D 1 704 900 GTP GTP . 
U 6 HOH A 1 801 11 HOH HOH . 
U 6 HOH A 2 802 18 HOH HOH . 
U 6 HOH A 3 803 22 HOH HOH . 
U 6 HOH A 4 804 31 HOH HOH . 
U 6 HOH A 5 805 32 HOH HOH . 
U 6 HOH A 6 806 44 HOH HOH . 
U 6 HOH A 7 807 46 HOH HOH . 
V 6 HOH B 1 801 15 HOH HOH . 
V 6 HOH B 2 802 34 HOH HOH . 
V 6 HOH B 3 803 38 HOH HOH . 
V 6 HOH B 4 804 48 HOH HOH . 
V 6 HOH B 5 805 51 HOH HOH . 
V 6 HOH B 6 806 52 HOH HOH . 
W 6 HOH C 1 801 25 HOH HOH . 
W 6 HOH C 2 802 1 HOH HOH . 
W 6 HOH C 3 803 3 HOH HOH . 
W 6 HOH C 4 804 4 HOH HOH . 
W 6 HOH C 5 805 9 HOH HOH . 
W 6 HOH C 6 806 10 HOH HOH . 
W 6 HOH C 7 807 12 HOH HOH . 
W 6 HOH C 8 808 14 HOH HOH . 
W 6 HOH C 9 809 17 HOH HOH . 
W 6 HOH C 10 810 19 HOH HOH . 
W 6 HOH C 11 811 20 HOH HOH . 
W 6 HOH C 12 812 21 HOH HOH . 
W 6 HOH C 13 813 27 HOH HOH . 
W 6 HOH C 14 814 33 HOH HOH . 
W 6 HOH C 15 815 47 HOH HOH . 
W 6 HOH C 16 816 49 HOH HOH . 
W 6 HOH C 17 817 50 HOH HOH . 
W 6 HOH C 18 818 53 HOH HOH . 
W 6 HOH C 19 819 54 HOH HOH . 
W 6 HOH C 20 820 58 HOH HOH . 
W 6 HOH C 21 821 59 HOH HOH . 
W 6 HOH C 22 822 60 HOH HOH . 
X 6 HOH D 1 801 55 HOH HOH . 
X 6 HOH D 2 802 56 HOH HOH . 
X 6 HOH D 3 803 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . Q 5 -33.76 -33.909 117.633 1 24.09 ? PG GTP 701 D 1 
HETATM 2 O O1G GTP . . . Q 5 -32.671 -34.782 118.156 1 23.4 ? O1G GTP 701 D 1 
HETATM 3 O O2G GTP . . . Q 5 -35.136 -34.552 117.56 1 23.91 ? O2G GTP 701 D 1 
HETATM 4 O O3G GTP . . . Q 5 -33.283 -33.244 116.382 1 22.92 ? O3G GTP 701 D 1 
HETATM 5 O O3B GTP . . . Q 5 -33.981 -32.79 118.756 1 22.05 ? O3B GTP 701 D 1 
HETATM 6 P PB GTP . . . Q 5 -34.358 -31.261 118.45 1 22.63 ? PB GTP 701 D 1 
HETATM 7 O O1B GTP . . . Q 5 -35.519 -30.909 119.324 1 22.01 ? O1B GTP 701 D 1 
HETATM 8 O O2B GTP . . . Q 5 -34.292 -31.006 116.988 1 23.83 ? O2B GTP 701 D 1 
HETATM 9 O O3A GTP . . . Q 5 -33.139 -30.397 119.069 1 23.22 ? O3A GTP 701 D 1 
HETATM 10 P PA GTP . . . Q 5 -31.605 -30.597 118.598 1 23.92 ? PA GTP 701 D 1 
HETATM 11 O O1A GTP . . . Q 5 -31.588 -31.179 117.211 1 23.69 ? O1A GTP 701 D 1 
HETATM 12 O O2A GTP . . . Q 5 -30.767 -31.293 119.66 1 22.81 ? O2A GTP 701 D 1 
HETATM 13 O O5' GTP . . . Q 5 -31.258 -29.03 118.553 1 25.43 ? O5' GTP 701 D 1 
HETATM 14 C C5' GTP . . . Q 5 -31.725 -28.146 117.542 1 27.59 ? C5' GTP 701 D 1 
HETATM 15 C C4' GTP . . . Q 5 -30.511 -27.647 116.774 1 29.53 ? C4' GTP 701 D 1 
HETATM 16 O O4' GTP . . . Q 5 -29.69 -26.844 117.643 1 30.42 ? O4' GTP 701 D 1 
HETATM 17 C C3' GTP . . . Q 5 -29.565 -28.735 116.22 1 29 ? C3' GTP 701 D 1 
HETATM 18 O O3' GTP . . . Q 5 -30.039 -29.139 114.916 1 28.1 ? O3' GTP 701 D 1 
HETATM 19 C C2' GTP . . . Q 5 -28.193 -28.071 116.203 1 27.66 ? C2' GTP 701 D 1 
HETATM 20 O O2' GTP . . . Q 5 -27.896 -27.542 114.913 1 26.57 ? O2' GTP 701 D 1 
HETATM 21 C C1' GTP . . . Q 5 -28.342 -26.866 117.094 1 28.49 ? C1' GTP 701 D 1 
HETATM 22 N N9 GTP . . . Q 5 -27.409 -26.852 118.233 1 28.98 ? N9 GTP 701 D 1 
HETATM 23 C C8 GTP . . . Q 5 -26.682 -25.786 118.654 1 30.57 ? C8 GTP 701 D 1 
HETATM 24 N N7 GTP . . . Q 5 -25.949 -26.098 119.735 1 27.99 ? N7 GTP 701 D 1 
HETATM 25 C C5 GTP . . . Q 5 -26.222 -27.353 120.023 1 27 ? C5 GTP 701 D 1 
HETATM 26 C C6 GTP . . . Q 5 -25.787 -28.281 121.056 1 26.59 ? C6 GTP 701 D 1 
HETATM 27 O O6 GTP . . . Q 5 -24.994 -27.827 121.897 1 26.47 ? O6 GTP 701 D 1 
HETATM 28 N N1 GTP . . . Q 5 -26.263 -29.546 121.027 1 26.67 ? N1 GTP 701 D 1 
HETATM 29 C C2 GTP . . . Q 5 -27.16 -29.936 120.081 1 27.91 ? C2 GTP 701 D 1 
HETATM 30 N N2 GTP . . . Q 5 -27.67 -31.172 120.034 1 29.24 ? N2 GTP 701 D 1 
HETATM 31 N N3 GTP . . . Q 5 -27.628 -29.127 119.103 1 29.92 ? N3 GTP 701 D 1 
HETATM 32 C C4 GTP . . . Q 5 -27.191 -27.847 119.039 1 28.45 ? C4 GTP 701 D 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           32 
#