data_4TO1
#
_model_server_result.job_id            Kchm9aIi2mhHx9mlFhPUBw 
_model_server_result.datetime_utc      '2024-11-07 01:27:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4to1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":706}' 
#
_entry.id    4TO1 
#
_exptl.entry_id    4TO1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.79 
_cell.angle_gamma         90 
_cell.entry_id            4TO1 
_cell.length_a            86.204 
_cell.length_b            141.586 
_cell.length_c            98.187 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TO1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 N N N 
? 5 P N N 
? 5 Q N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O3G DTP . A DTP 702 1_555 G MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc2 F O1B DTP . A DTP 702 1_555 G MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc3 G MG MG . A MG 703 1_555 P O2B GTP . C GTP 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc4 G MG MG . A MG 703 1_555 P O1A GTP . C GTP 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc5 G MG MG . A MG 703 1_555 P O3G GTP . C GTP 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
metalc ? metalc6 G MG MG . A MG 703 1_555 W O HOH . C HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc7 H MG MG . A MG 704 1_555 U O HOH . A HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc8 H MG MG . A MG 704 1_555 J O1B DTP . B DTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc9 H MG MG . A MG 704 1_555 J O2G DTP . B DTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.725 ? 
metalc ? metalc10 H MG MG . A MG 704 1_555 T O1G GTP . D GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? 
metalc ? metalc11 H MG MG . A MG 704 1_555 T O1B GTP . D GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc12 H MG MG . A MG 704 1_555 T O2A GTP . D GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc13 K O1B DCP . C DCP 701 1_555 L MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? 
metalc ? metalc14 K O2G DCP . C DCP 701 1_555 L MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc15 L MG MG . C MG 702 1_555 Q O3G GTP . D GTP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc16 L MG MG . C MG 702 1_555 Q O2B GTP . D GTP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc17 L MG MG . C MG 702 1_555 Q O1A GTP . D GTP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc18 L MG MG . C MG 702 1_555 X O HOH . D HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc19 M MG MG . C MG 703 1_555 N O1G GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? 
metalc ? metalc20 M MG MG . C MG 703 1_555 N O1A GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc21 M MG MG . C MG 703 1_555 N O1B GTP . C GTP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc22 M MG MG . C MG 703 1_555 W O HOH . C HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc23 M MG MG . C MG 703 1_555 R O2G DCP . D DCP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc24 M MG MG . C MG 703 1_555 R O1B DCP . D DCP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 222 n n 
PG O2G GTP sing 223 n n 
PG O3G GTP sing 224 n n 
PG O3B GTP sing 225 n n 
O2G HOG2 GTP sing 226 n n 
O3G HOG3 GTP sing 227 n n 
O3B PB GTP sing 228 n n 
PB O1B GTP doub 229 n n 
PB O2B GTP sing 230 n n 
PB O3A GTP sing 231 n n 
O2B HOB2 GTP sing 232 n n 
O3A PA GTP sing 233 n n 
PA O1A GTP doub 234 n n 
PA O2A GTP sing 235 n n 
PA O5' GTP sing 236 n n 
O2A HOA2 GTP sing 237 n n 
O5' C5' GTP sing 238 n n 
C5' C4' GTP sing 239 n n 
C5' H5' GTP sing 240 n n 
C5' "H5''" GTP sing 241 n n 
C4' O4' GTP sing 242 n n 
C4' C3' GTP sing 243 n n 
C4' H4' GTP sing 244 n n 
O4' C1' GTP sing 245 n n 
C3' O3' GTP sing 246 n n 
C3' C2' GTP sing 247 n n 
C3' H3' GTP sing 248 n n 
O3' HO3' GTP sing 249 n n 
C2' O2' GTP sing 250 n n 
C2' C1' GTP sing 251 n n 
C2' H2' GTP sing 252 n n 
O2' HO2' GTP sing 253 n n 
C1' N9 GTP sing 254 n n 
C1' H1' GTP sing 255 n n 
N9 C8 GTP sing 256 n y 
N9 C4 GTP sing 257 n y 
C8 N7 GTP doub 258 n y 
C8 H8 GTP sing 259 n n 
N7 C5 GTP sing 260 n y 
C5 C6 GTP sing 261 n n 
C5 C4 GTP doub 262 n y 
C6 O6 GTP doub 263 n n 
C6 N1 GTP sing 264 n n 
N1 C2 GTP sing 265 n n 
N1 HN1 GTP sing 266 n n 
C2 N2 GTP sing 267 n n 
C2 N3 GTP doub 268 n n 
N2 HN21 GTP sing 269 n n 
N2 HN22 GTP sing 270 n n 
N3 C4 GTP sing 271 n n 
#
_atom_sites.entry_id                     4TO1 
_atom_sites.fract_transf_matrix[1][1]    0.0116 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005605 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011311 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 DCP A 1 701 700 DCP DCP . 
F 3 DTP A 1 702 800 DTP DTP . 
G 4 MG A 1 703 850 MG MG . 
H 4 MG A 1 704 850 MG MG . 
I 2 DCP B 1 701 700 DCP DCP . 
J 3 DTP B 1 702 800 DTP DTP . 
K 2 DCP C 1 701 800 DCP DCP . 
L 4 MG C 1 702 850 MG MG . 
M 4 MG C 1 703 850 MG MG . 
N 5 GTP C 1 704 900 GTP GTP . 
O 2 DCP C 1 705 700 DCP DCP . 
P 5 GTP C 1 706 900 GTP GTP . 
Q 5 GTP D 1 701 900 GTP GTP . 
R 2 DCP D 1 702 800 DCP DCP . 
S 2 DCP D 1 703 700 DCP DCP . 
T 5 GTP D 1 704 900 GTP GTP . 
U 6 HOH A 1 801 11 HOH HOH . 
U 6 HOH A 2 802 18 HOH HOH . 
U 6 HOH A 3 803 22 HOH HOH . 
U 6 HOH A 4 804 31 HOH HOH . 
U 6 HOH A 5 805 32 HOH HOH . 
U 6 HOH A 6 806 44 HOH HOH . 
U 6 HOH A 7 807 46 HOH HOH . 
V 6 HOH B 1 801 15 HOH HOH . 
V 6 HOH B 2 802 34 HOH HOH . 
V 6 HOH B 3 803 38 HOH HOH . 
V 6 HOH B 4 804 48 HOH HOH . 
V 6 HOH B 5 805 51 HOH HOH . 
V 6 HOH B 6 806 52 HOH HOH . 
W 6 HOH C 1 801 25 HOH HOH . 
W 6 HOH C 2 802 1 HOH HOH . 
W 6 HOH C 3 803 3 HOH HOH . 
W 6 HOH C 4 804 4 HOH HOH . 
W 6 HOH C 5 805 9 HOH HOH . 
W 6 HOH C 6 806 10 HOH HOH . 
W 6 HOH C 7 807 12 HOH HOH . 
W 6 HOH C 8 808 14 HOH HOH . 
W 6 HOH C 9 809 17 HOH HOH . 
W 6 HOH C 10 810 19 HOH HOH . 
W 6 HOH C 11 811 20 HOH HOH . 
W 6 HOH C 12 812 21 HOH HOH . 
W 6 HOH C 13 813 27 HOH HOH . 
W 6 HOH C 14 814 33 HOH HOH . 
W 6 HOH C 15 815 47 HOH HOH . 
W 6 HOH C 16 816 49 HOH HOH . 
W 6 HOH C 17 817 50 HOH HOH . 
W 6 HOH C 18 818 53 HOH HOH . 
W 6 HOH C 19 819 54 HOH HOH . 
W 6 HOH C 20 820 58 HOH HOH . 
W 6 HOH C 21 821 59 HOH HOH . 
W 6 HOH C 22 822 60 HOH HOH . 
X 6 HOH D 1 801 55 HOH HOH . 
X 6 HOH D 2 802 56 HOH HOH . 
X 6 HOH D 3 803 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . P 5 -31.375 12.452 87.116 1 24.56 ? PG GTP 706 C 1 
HETATM 2 O O1G GTP . . . P 5 -32.72 13.128 86.85 1 24.64 ? O1G GTP 706 C 1 
HETATM 3 O O2G GTP . . . P 5 -30.142 13.24 86.789 1 25.86 ? O2G GTP 706 C 1 
HETATM 4 O O3G GTP . . . P 5 -31.29 11.842 88.457 1 24.71 ? O3G GTP 706 C 1 
HETATM 5 O O3B GTP . . . P 5 -31.229 11.328 86.015 1 21.88 ? O3B GTP 706 C 1 
HETATM 6 P PB GTP . . . P 5 -31.668 9.802 86.228 1 20.37 ? PB GTP 706 C 1 
HETATM 7 O O1B GTP . . . P 5 -32.664 9.367 85.199 1 23.37 ? O1B GTP 706 C 1 
HETATM 8 O O2B GTP . . . P 5 -31.993 9.566 87.678 1 21.37 ? O2B GTP 706 C 1 
HETATM 9 O O3A GTP . . . P 5 -30.245 9.119 85.785 1 20.49 ? O3A GTP 706 C 1 
HETATM 10 P PA GTP . . . P 5 -28.857 9.301 86.658 1 18.69 ? PA GTP 706 C 1 
HETATM 11 O O1A GTP . . . P 5 -29.24 9.779 88.044 1 16.85 ? O1A GTP 706 C 1 
HETATM 12 O O2A GTP . . . P 5 -27.81 9.954 85.848 1 17.32 ? O2A GTP 706 C 1 
HETATM 13 O O5' GTP . . . P 5 -28.373 7.786 86.782 1 19.54 ? O5' GTP 706 C 1 
HETATM 14 C C5' GTP . . . P 5 -28.963 6.914 87.734 1 20.04 ? C5' GTP 706 C 1 
HETATM 15 C C4' GTP . . . P 5 -27.947 6.485 88.763 1 20.07 ? C4' GTP 706 C 1 
HETATM 16 O O4' GTP . . . P 5 -26.854 5.785 88.168 1 21.39 ? O4' GTP 706 C 1 
HETATM 17 C C3' GTP . . . P 5 -27.282 7.618 89.464 1 20.21 ? C3' GTP 706 C 1 
HETATM 18 O O3' GTP . . . P 5 -28.094 8.031 90.538 1 19.35 ? O3' GTP 706 C 1 
HETATM 19 C C2' GTP . . . P 5 -25.961 6.999 89.937 1 22.54 ? C2' GTP 706 C 1 
HETATM 20 O O2' GTP . . . P 5 -26.042 6.471 91.265 1 22.43 ? O2' GTP 706 C 1 
HETATM 21 C C1' GTP . . . P 5 -25.699 5.819 89.038 1 22.34 ? C1' GTP 706 C 1 
HETATM 22 N N9 GTP . . . P 5 -24.472 5.942 88.23 1 23.26 ? N9 GTP 706 C 1 
HETATM 23 C C8 GTP . . . P 5 -23.605 4.957 88.009 1 24.38 ? C8 GTP 706 C 1 
HETATM 24 N N7 GTP . . . P 5 -22.617 5.367 87.154 1 25.44 ? N7 GTP 706 C 1 
HETATM 25 C C5 GTP . . . P 5 -22.873 6.616 86.8 1 22.73 ? C5 GTP 706 C 1 
HETATM 26 C C6 GTP . . . P 5 -22.248 7.592 85.926 1 23.67 ? C6 GTP 706 C 1 
HETATM 27 O O6 GTP . . . P 5 -21.207 7.376 85.3 1 21.76 ? O6 GTP 706 C 1 
HETATM 28 N N1 GTP . . . P 5 -22.85 8.78 85.821 1 26.23 ? N1 GTP 706 C 1 
HETATM 29 C C2 GTP . . . P 5 -24.011 9.081 86.485 1 24.44 ? C2 GTP 706 C 1 
HETATM 30 N N2 GTP . . . P 5 -24.58 10.301 86.327 1 24.24 ? N2 GTP 706 C 1 
HETATM 31 N N3 GTP . . . P 5 -24.649 8.219 87.29 1 21.3 ? N3 GTP 706 C 1 
HETATM 32 C C4 GTP . . . P 5 -24.113 6.998 87.484 1 23.59 ? C4 GTP 706 C 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           32 
#