data_4TPL # _model_server_result.job_id SniYcUpSVPXgaLl6unk2UA _model_server_result.datetime_utc '2024-11-20 09:36:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tpl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 4TPL # _exptl.entry_id 4TPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4TPL _cell.length_a 167.85 _cell.length_b 167.85 _cell.length_c 93.73 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 401 NAG 2 n C NAG 2 C 2 NAG A 402 NAG 2 n D NAG 1 D 1 NAG A 441 NAG 2 n D NAG 2 D 2 NAG A 442 NAG 2 n E NAG 1 E 1 NAG B 421 NAG 2 n E NAG 2 E 2 NAG B 422 NAG 3 n F NAG 1 F 1 NAG B 441 NAG 3 n F NAG 2 F 2 NAG B 442 NAG 3 n F BMA 3 F 3 BMA B 443 BMA 3 n F MAN 4 F 4 MAN B 444 MAN 3 n F MAN 5 F 5 MAN B 445 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 4 1_555 A SG CYS 40 A CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 80 A CYS 55 1_555 A SG CYS 168 A CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 204 A CYS 179 1_555 A SG CYS 248 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 305 A CYS 280 1_555 A SG CYS 354 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 316 A CYS 291 1_555 A SG CYS 337 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 338 A CYS 313 1_555 A SG CYS 341 A CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 B SG CYS 29 B CYS 4 1_555 B SG CYS 40 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 B SG CYS 80 B CYS 55 1_555 B SG CYS 168 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 B SG CYS 204 B CYS 179 1_555 B SG CYS 248 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 B SG CYS 305 B CYS 280 1_555 B SG CYS 354 B CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 B SG CYS 316 B CYS 291 1_555 B SG CYS 337 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 B SG CYS 338 B CYS 313 1_555 B SG CYS 341 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 155 A ASN 130 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 200 A ASN 175 1_555 G C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 A ND2 ASN 232 A ASN 207 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale4 B ND2 ASN 200 B ASN 175 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale5 B ND2 ASN 232 B ASN 207 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale8 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale10 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale12 F O6 BMA . F BMA 3 1_555 F C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 285 n n C1 O1 NAG sing 286 n n C1 O5 NAG sing 287 n n C1 H1 NAG sing 288 n n C2 C3 NAG sing 289 n n C2 N2 NAG sing 290 n n C2 H2 NAG sing 291 n n C3 C4 NAG sing 292 n n C3 O3 NAG sing 293 n n C3 H3 NAG sing 294 n n C4 C5 NAG sing 295 n n C4 O4 NAG sing 296 n n C4 H4 NAG sing 297 n n C5 C6 NAG sing 298 n n C5 O5 NAG sing 299 n n C5 H5 NAG sing 300 n n C6 O6 NAG sing 301 n n C6 H61 NAG sing 302 n n C6 H62 NAG sing 303 n n C7 C8 NAG sing 304 n n C7 N2 NAG sing 305 n n C7 O7 NAG doub 306 n n C8 H81 NAG sing 307 n n C8 H82 NAG sing 308 n n C8 H83 NAG sing 309 n n N2 HN2 NAG sing 310 n n O1 HO1 NAG sing 311 n n O3 HO3 NAG sing 312 n n O4 HO4 NAG sing 313 n n O6 HO6 NAG sing 314 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4TPL _atom_sites.fract_transf_matrix[1][1] 0.005958 _atom_sites.fract_transf_matrix[1][2] 0.00344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 403 421 NAG NAG . H 5 SO4 A 1 406 5 SO4 SO4 . I 6 OXN A 1 407 2 OXN OXN . J 6 OXN A 1 408 3 OXN OXN . K 6 OXN B 1 408 1 OXN OXN . L 6 OXN B 1 409 4 OXN OXN . M 7 HOH A 1 501 57 HOH HOH . M 7 HOH A 2 502 60 HOH HOH . M 7 HOH A 3 503 1 HOH HOH . M 7 HOH A 4 504 2 HOH HOH . M 7 HOH A 5 505 3 HOH HOH . M 7 HOH A 6 506 5 HOH HOH . M 7 HOH A 7 507 7 HOH HOH . M 7 HOH A 8 508 10 HOH HOH . M 7 HOH A 9 509 11 HOH HOH . M 7 HOH A 10 510 14 HOH HOH . M 7 HOH A 11 511 18 HOH HOH . M 7 HOH A 12 512 22 HOH HOH . M 7 HOH A 13 513 23 HOH HOH . M 7 HOH A 14 514 24 HOH HOH . M 7 HOH A 15 515 25 HOH HOH . M 7 HOH A 16 516 26 HOH HOH . M 7 HOH A 17 517 27 HOH HOH . M 7 HOH A 18 518 28 HOH HOH . M 7 HOH A 19 519 29 HOH HOH . M 7 HOH A 20 520 31 HOH HOH . M 7 HOH A 21 521 36 HOH HOH . M 7 HOH A 22 522 37 HOH HOH . M 7 HOH A 23 523 39 HOH HOH . M 7 HOH A 24 524 40 HOH HOH . M 7 HOH A 25 525 41 HOH HOH . M 7 HOH A 26 526 43 HOH HOH . M 7 HOH A 27 527 44 HOH HOH . M 7 HOH A 28 528 45 HOH HOH . M 7 HOH A 29 529 46 HOH HOH . M 7 HOH A 30 530 47 HOH HOH . M 7 HOH A 31 531 56 HOH HOH . M 7 HOH A 32 532 58 HOH HOH . M 7 HOH A 33 533 59 HOH HOH . M 7 HOH A 34 534 66 HOH HOH . N 7 HOH B 1 501 65 HOH HOH . N 7 HOH B 2 502 63 HOH HOH . N 7 HOH B 3 503 4 HOH HOH . N 7 HOH B 4 504 6 HOH HOH . N 7 HOH B 5 505 8 HOH HOH . N 7 HOH B 6 506 9 HOH HOH . N 7 HOH B 7 507 12 HOH HOH . N 7 HOH B 8 508 13 HOH HOH . N 7 HOH B 9 509 15 HOH HOH . N 7 HOH B 10 510 17 HOH HOH . N 7 HOH B 11 511 20 HOH HOH . N 7 HOH B 12 512 21 HOH HOH . N 7 HOH B 13 513 32 HOH HOH . N 7 HOH B 14 514 33 HOH HOH . N 7 HOH B 15 515 34 HOH HOH . N 7 HOH B 16 516 48 HOH HOH . N 7 HOH B 17 517 49 HOH HOH . N 7 HOH B 18 518 51 HOH HOH . N 7 HOH B 19 519 52 HOH HOH . N 7 HOH B 20 520 53 HOH HOH . N 7 HOH B 21 521 54 HOH HOH . N 7 HOH B 22 522 61 HOH HOH . N 7 HOH B 23 523 62 HOH HOH . N 7 HOH B 24 524 64 HOH HOH . N 7 HOH B 25 525 67 HOH HOH . N 7 HOH B 26 526 69 HOH HOH . N 7 HOH B 27 527 70 HOH HOH . N 7 HOH B 28 528 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 31.777 -45.021 6.702 1 142.2 ? C1 NAG 403 A 1 HETATM 2 C C2 NAG . . . G 4 30.358 -44.587 6.368 1 151.65 ? C2 NAG 403 A 1 HETATM 3 C C3 NAG . . . G 4 29.419 -45.79 6.401 1 150.81 ? C3 NAG 403 A 1 HETATM 4 C C4 NAG . . . G 4 29.952 -46.906 5.51 1 150.63 ? C4 NAG 403 A 1 HETATM 5 C C5 NAG . . . G 4 31.408 -47.22 5.85 1 157.74 ? C5 NAG 403 A 1 HETATM 6 C C6 NAG . . . G 4 32.035 -48.208 4.894 1 149.14 ? C6 NAG 403 A 1 HETATM 7 C C7 NAG . . . G 4 30.034 -42.247 7.018 1 141.06 ? C7 NAG 403 A 1 HETATM 8 C C8 NAG . . . G 4 29.522 -41.308 8.073 1 127.77 ? C8 NAG 403 A 1 HETATM 9 N N2 NAG . . . G 4 29.904 -43.552 7.281 1 154.16 ? N2 NAG 403 A 1 HETATM 10 O O3 NAG . . . G 4 28.129 -45.396 5.95 1 142.07 ? O3 NAG 403 A 1 HETATM 11 O O4 NAG . . . G 4 29.166 -48.079 5.688 1 149.45 ? O4 NAG 403 A 1 HETATM 12 O O5 NAG . . . G 4 32.199 -46.023 5.782 1 166.56 ? O5 NAG 403 A 1 HETATM 13 O O6 NAG . . . G 4 31.047 -48.942 4.184 1 138.67 ? O6 NAG 403 A 1 HETATM 14 O O7 NAG . . . G 4 30.545 -41.842 5.974 1 121.22 ? O7 NAG 403 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #