data_4TPL # _model_server_result.job_id Gp07UafjDK9LM6cphu4n-A _model_server_result.datetime_utc '2024-11-20 09:21:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tpl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":408}' # _entry.id 4TPL # _exptl.entry_id 4TPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 646.849 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description OXTOXYNOL-10 _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4TPL _cell.length_a 167.85 _cell.length_b 167.85 _cell.length_c 93.73 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 401 NAG 2 n C NAG 2 C 2 NAG A 402 NAG 2 n D NAG 1 D 1 NAG A 441 NAG 2 n D NAG 2 D 2 NAG A 442 NAG 2 n E NAG 1 E 1 NAG B 421 NAG 2 n E NAG 2 E 2 NAG B 422 NAG 3 n F NAG 1 F 1 NAG B 441 NAG 3 n F NAG 2 F 2 NAG B 442 NAG 3 n F BMA 3 F 3 BMA B 443 BMA 3 n F MAN 4 F 4 MAN B 444 MAN 3 n F MAN 5 F 5 MAN B 445 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 4 1_555 A SG CYS 40 A CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 80 A CYS 55 1_555 A SG CYS 168 A CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 204 A CYS 179 1_555 A SG CYS 248 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 305 A CYS 280 1_555 A SG CYS 354 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 316 A CYS 291 1_555 A SG CYS 337 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 338 A CYS 313 1_555 A SG CYS 341 A CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 B SG CYS 29 B CYS 4 1_555 B SG CYS 40 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 B SG CYS 80 B CYS 55 1_555 B SG CYS 168 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 B SG CYS 204 B CYS 179 1_555 B SG CYS 248 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 B SG CYS 305 B CYS 280 1_555 B SG CYS 354 B CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 B SG CYS 316 B CYS 291 1_555 B SG CYS 337 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 B SG CYS 338 B CYS 313 1_555 B SG CYS 341 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 155 A ASN 130 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 200 A ASN 175 1_555 G C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 A ND2 ASN 232 A ASN 207 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale4 B ND2 ASN 200 B ASN 175 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale5 B ND2 ASN 232 B ASN 207 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale8 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale10 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale12 F O6 BMA . F BMA 3 1_555 F C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? # _chem_comp.formula 'C34 H62 O11' _chem_comp.formula_weight 646.849 _chem_comp.id OXN _chem_comp.mon_nstd_flag . _chem_comp.name OXTOXYNOL-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ALPHA-[4-(1,1,3,3-TETRAMETHYLBUTYL)PHENYL]-OMEGA-HYDROXYPOLY(OXY-1,2-ETHANEDIYL);TRITON X-100' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C1 OXN sing 315 n n C5 C6 OXN sing 316 n n C5 H51 OXN sing 317 n n C5 H52 OXN sing 318 n n C1 C3 OXN sing 319 n n C1 C4 OXN sing 320 n n C1 C2 OXN sing 321 n n C3 H31 OXN sing 322 n n C3 H32 OXN sing 323 n n C3 H33 OXN sing 324 n n C4 H41 OXN sing 325 n n C4 H42 OXN sing 326 n n C4 H43 OXN sing 327 n n C2 H21 OXN sing 328 n n C2 H22 OXN sing 329 n n C2 H23 OXN sing 330 n n C6 C9 OXN sing 331 n n C6 C8 OXN sing 332 n n C6 C7 OXN sing 333 n n C9 C10 OXN doub 334 n y C9 C14 OXN sing 335 n y C8 H81 OXN sing 336 n n C8 H82 OXN sing 337 n n C8 H83 OXN sing 338 n n C7 H71 OXN sing 339 n n C7 H72 OXN sing 340 n n C7 H73 OXN sing 341 n n C10 C11 OXN sing 342 n y C10 H10 OXN sing 343 n n C11 C12 OXN doub 344 n y C11 H11 OXN sing 345 n n C12 C13 OXN sing 346 n y C12 O15 OXN sing 347 n n C13 C14 OXN doub 348 n y C13 H13 OXN sing 349 n n C14 H14 OXN sing 350 n n O15 C16 OXN sing 351 n n C16 C17 OXN sing 352 n n C16 H161 OXN sing 353 n n C16 H162 OXN sing 354 n n C17 O18 OXN sing 355 n n C17 H171 OXN sing 356 n n C17 H172 OXN sing 357 n n O18 C19 OXN sing 358 n n C19 C20 OXN sing 359 n n C19 H191 OXN sing 360 n n C19 H192 OXN sing 361 n n C20 O21 OXN sing 362 n n C20 H201 OXN sing 363 n n C20 H202 OXN sing 364 n n O21 C22 OXN sing 365 n n C22 C23 OXN sing 366 n n C22 H221 OXN sing 367 n n C22 H222 OXN sing 368 n n C23 O24 OXN sing 369 n n C23 H231 OXN sing 370 n n C23 H232 OXN sing 371 n n O24 C25 OXN sing 372 n n C25 C26 OXN sing 373 n n C25 H251 OXN sing 374 n n C25 H252 OXN sing 375 n n C26 O27 OXN sing 376 n n C26 H261 OXN sing 377 n n C26 H262 OXN sing 378 n n O27 C28 OXN sing 379 n n C28 C29 OXN sing 380 n n C28 H281 OXN sing 381 n n C28 H282 OXN sing 382 n n C29 O30 OXN sing 383 n n C29 H291 OXN sing 384 n n C29 H292 OXN sing 385 n n O30 C31 OXN sing 386 n n C31 C32 OXN sing 387 n n C31 H311 OXN sing 388 n n C31 H312 OXN sing 389 n n C32 O33 OXN sing 390 n n C32 H321 OXN sing 391 n n C32 H322 OXN sing 392 n n O33 C34 OXN sing 393 n n C34 C35 OXN sing 394 n n C34 H341 OXN sing 395 n n C34 H342 OXN sing 396 n n C35 O36 OXN sing 397 n n C35 H351 OXN sing 398 n n C35 H352 OXN sing 399 n n O36 C37 OXN sing 400 n n C37 C38 OXN sing 401 n n C37 H371 OXN sing 402 n n C37 H372 OXN sing 403 n n C38 O39 OXN sing 404 n n C38 H381 OXN sing 405 n n C38 H382 OXN sing 406 n n O39 C40 OXN sing 407 n n C40 C41 OXN sing 408 n n C40 H401 OXN sing 409 n n C40 H402 OXN sing 410 n n C41 O42 OXN sing 411 n n C41 H411 OXN sing 412 n n C41 H412 OXN sing 413 n n O42 C43 OXN sing 414 n n C43 C44 OXN sing 415 n n C43 H431 OXN sing 416 n n C43 H432 OXN sing 417 n n C44 O45 OXN sing 418 n n C44 H441 OXN sing 419 n n C44 H442 OXN sing 420 n n O45 H45 OXN sing 421 n n # _atom_sites.entry_id 4TPL _atom_sites.fract_transf_matrix[1][1] 0.005958 _atom_sites.fract_transf_matrix[1][2] 0.00344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 403 421 NAG NAG . H 5 SO4 A 1 406 5 SO4 SO4 . I 6 OXN A 1 407 2 OXN OXN . J 6 OXN A 1 408 3 OXN OXN . K 6 OXN B 1 408 1 OXN OXN . L 6 OXN B 1 409 4 OXN OXN . M 7 HOH A 1 501 57 HOH HOH . M 7 HOH A 2 502 60 HOH HOH . M 7 HOH A 3 503 1 HOH HOH . M 7 HOH A 4 504 2 HOH HOH . M 7 HOH A 5 505 3 HOH HOH . M 7 HOH A 6 506 5 HOH HOH . M 7 HOH A 7 507 7 HOH HOH . M 7 HOH A 8 508 10 HOH HOH . M 7 HOH A 9 509 11 HOH HOH . M 7 HOH A 10 510 14 HOH HOH . M 7 HOH A 11 511 18 HOH HOH . M 7 HOH A 12 512 22 HOH HOH . M 7 HOH A 13 513 23 HOH HOH . M 7 HOH A 14 514 24 HOH HOH . M 7 HOH A 15 515 25 HOH HOH . M 7 HOH A 16 516 26 HOH HOH . M 7 HOH A 17 517 27 HOH HOH . M 7 HOH A 18 518 28 HOH HOH . M 7 HOH A 19 519 29 HOH HOH . M 7 HOH A 20 520 31 HOH HOH . M 7 HOH A 21 521 36 HOH HOH . M 7 HOH A 22 522 37 HOH HOH . M 7 HOH A 23 523 39 HOH HOH . M 7 HOH A 24 524 40 HOH HOH . M 7 HOH A 25 525 41 HOH HOH . M 7 HOH A 26 526 43 HOH HOH . M 7 HOH A 27 527 44 HOH HOH . M 7 HOH A 28 528 45 HOH HOH . M 7 HOH A 29 529 46 HOH HOH . M 7 HOH A 30 530 47 HOH HOH . M 7 HOH A 31 531 56 HOH HOH . M 7 HOH A 32 532 58 HOH HOH . M 7 HOH A 33 533 59 HOH HOH . M 7 HOH A 34 534 66 HOH HOH . N 7 HOH B 1 501 65 HOH HOH . N 7 HOH B 2 502 63 HOH HOH . N 7 HOH B 3 503 4 HOH HOH . N 7 HOH B 4 504 6 HOH HOH . N 7 HOH B 5 505 8 HOH HOH . N 7 HOH B 6 506 9 HOH HOH . N 7 HOH B 7 507 12 HOH HOH . N 7 HOH B 8 508 13 HOH HOH . N 7 HOH B 9 509 15 HOH HOH . N 7 HOH B 10 510 17 HOH HOH . N 7 HOH B 11 511 20 HOH HOH . N 7 HOH B 12 512 21 HOH HOH . N 7 HOH B 13 513 32 HOH HOH . N 7 HOH B 14 514 33 HOH HOH . N 7 HOH B 15 515 34 HOH HOH . N 7 HOH B 16 516 48 HOH HOH . N 7 HOH B 17 517 49 HOH HOH . N 7 HOH B 18 518 51 HOH HOH . N 7 HOH B 19 519 52 HOH HOH . N 7 HOH B 20 520 53 HOH HOH . N 7 HOH B 21 521 54 HOH HOH . N 7 HOH B 22 522 61 HOH HOH . N 7 HOH B 23 523 62 HOH HOH . N 7 HOH B 24 524 64 HOH HOH . N 7 HOH B 25 525 67 HOH HOH . N 7 HOH B 26 526 69 HOH HOH . N 7 HOH B 27 527 70 HOH HOH . N 7 HOH B 28 528 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 OXN . . . J 6 76.124 -66.087 26.706 1 200.18 ? C5 OXN 408 A 1 HETATM 2 C C1 OXN . . . J 6 75.109 -64.853 26.372 1 117.84 ? C1 OXN 408 A 1 HETATM 3 C C3 OXN . . . J 6 74.846 -63.961 27.621 1 88.5 ? C3 OXN 408 A 1 HETATM 4 C C4 OXN . . . J 6 75.822 -63.966 25.371 1 104.79 ? C4 OXN 408 A 1 HETATM 5 C C2 OXN . . . J 6 73.755 -65.284 25.738 1 107.32 ? C2 OXN 408 A 1 HETATM 6 C C6 OXN . . . J 6 75.614 -67.443 27.319 1 136.22 ? C6 OXN 408 A 1 HETATM 7 C C9 OXN . . . J 6 76.869 -68.144 28.008 1 174.77 ? C9 OXN 408 A 1 HETATM 8 C C8 OXN . . . J 6 75.107 -68.378 26.221 1 111.76 ? C8 OXN 408 A 1 HETATM 9 C C7 OXN . . . J 6 74.542 -67.289 28.399 1 132.41 ? C7 OXN 408 A 1 HETATM 10 C C10 OXN . . . J 6 77.94 -67.37 28.368 1 169.56 ? C10 OXN 408 A 1 HETATM 11 C C11 OXN . . . J 6 79.061 -67.97 28.978 1 170.66 ? C11 OXN 408 A 1 HETATM 12 C C12 OXN . . . J 6 79.057 -69.386 29.218 1 169.12 ? C12 OXN 408 A 1 HETATM 13 C C13 OXN . . . J 6 77.935 -70.15 28.836 1 169.09 ? C13 OXN 408 A 1 HETATM 14 C C14 OXN . . . J 6 76.832 -69.514 28.223 1 171.03 ? C14 OXN 408 A 1 HETATM 15 O O15 OXN . . . J 6 80.183 -70.021 29.84 1 151.42 ? O15 OXN 408 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #