data_4TPM
#
_model_server_result.job_id            3sqQslpa-PsYuM3jAkc8EQ 
_model_server_result.datetime_utc      '2025-01-11 14:59:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4tpm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":2008}' 
#
_entry.id    4TPM 
#
_exptl.entry_id    4TPM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              391.466 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[1-(3-{[1-(quinolin-2-yl)azetidin-3-yl]oxy}pyrazin-2-yl)piperidin-4-yl]methanol' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4TPM 
_cell.length_a            253.878 
_cell.length_b            253.878 
_cell.length_c            253.878 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TPM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        196 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,X 1 1,4,5 
B,N,O,P,Q,R,S,T,U,V,W,Y 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 
4 'crystal symmetry operation' 18_555 z,-x+1/2,-y+1/2 0 0 1 -1 0 0 0 -1 0 0 126.939 126.939 
5 'crystal symmetry operation' 48_555 -y+1/2,-z+1/2,x 0 -1 0 0 0 -1 1 0 0 126.939 126.939 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 60 A CYS 488 1_555 A SG CYS 64 A CYS 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 B SG CYS 60 B CYS 488 1_555 B SG CYS 64 B CYS 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc1 A NE2 HIS 91 A HIS 519 1_555 M ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc2 A NE2 HIS 125 A HIS 553 1_555 M ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc3 A OD1 ASP 126 A ASP 554 1_555 L ZN ZN . A ZN 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc4 A OD2 ASP 126 A ASP 554 1_555 L ZN ZN . A ZN 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc5 A OD2 ASP 126 A ASP 554 1_555 M ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc6 A OD1 ASP 236 A ASP 664 1_555 M ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc7 L ZN ZN . A ZN 2010 1_555 X O HOH . A HOH 2123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc8 L ZN ZN . A ZN 2010 1_555 X O HOH . A HOH 2124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? 
metalc ? metalc9 L ZN ZN . A ZN 2010 1_555 X O HOH . A HOH 2125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc10 B NE2 HIS 91 B HIS 519 1_555 V ZN ZN . B ZN 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc11 B NE2 HIS 125 B HIS 553 1_555 V ZN ZN . B ZN 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc12 B OD2 ASP 126 B ASP 554 1_555 V ZN ZN . B ZN 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc13 B OD1 ASP 126 B ASP 554 1_555 W ZN ZN . B ZN 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc14 B OD1 ASP 236 B ASP 664 1_555 V ZN ZN . B ZN 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc15 V ZN ZN . B ZN 2009 1_555 Y O HOH . B HOH 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc16 W ZN ZN . B ZN 2010 1_555 Y O HOH . B HOH 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc17 W ZN ZN . B ZN 2010 1_555 Y O HOH . B HOH 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc18 W ZN ZN . B ZN 2010 1_555 Y O HOH . B HOH 2136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
#
_chem_comp.formula           'C22 H25 N5 O2' 
_chem_comp.formula_weight    391.466 
_chem_comp.id                35E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[1-(3-{[1-(quinolin-2-yl)azetidin-3-yl]oxy}pyrazin-2-yl)piperidin-4-yl]methanol' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C02 O01 35E sing 1 n n 
C02 C03 35E sing 2 n n 
C08 C03 35E sing 3 n n 
C08 C07 35E sing 4 n n 
C03 C04 35E sing 5 n n 
C07 N06 35E sing 6 n n 
C04 C05 35E sing 7 n n 
N06 C05 35E sing 8 n n 
N06 C09 35E sing 9 n n 
N10 C09 35E doub 10 n y 
N10 C11 35E sing 11 n y 
C09 C14 35E sing 12 n y 
C11 C12 35E doub 13 n y 
C14 O15 35E sing 14 n n 
C14 N13 35E doub 15 n y 
O15 C16 35E sing 16 n n 
C12 N13 35E sing 17 n y 
C16 C17 35E sing 18 n n 
C16 C19 35E sing 19 n n 
C17 N18 35E sing 20 n n 
C19 N18 35E sing 21 n n 
N18 C20 35E sing 22 n n 
N29 C20 35E doub 23 n y 
N29 C28 35E sing 24 n y 
C20 C21 35E sing 25 n y 
C27 C28 35E doub 26 n y 
C27 C26 35E sing 27 n y 
C28 C23 35E sing 28 n y 
C21 C22 35E doub 29 n y 
C26 C25 35E doub 30 n y 
C23 C22 35E sing 31 n y 
C23 C24 35E doub 32 n y 
C25 C24 35E sing 33 n y 
O01 H1 35E sing 34 n n 
C02 H2 35E sing 35 n n 
C02 H3 35E sing 36 n n 
C03 H4 35E sing 37 n n 
C04 H5 35E sing 38 n n 
C04 H6 35E sing 39 n n 
C05 H7 35E sing 40 n n 
C05 H8 35E sing 41 n n 
C07 H9 35E sing 42 n n 
C07 H10 35E sing 43 n n 
C08 H11 35E sing 44 n n 
C08 H12 35E sing 45 n n 
C11 H13 35E sing 46 n n 
C12 H14 35E sing 47 n n 
C16 H15 35E sing 48 n n 
C17 H16 35E sing 49 n n 
C17 H17 35E sing 50 n n 
C19 H18 35E sing 51 n n 
C19 H19 35E sing 52 n n 
C21 H20 35E sing 53 n n 
C22 H21 35E sing 54 n n 
C24 H22 35E sing 55 n n 
C25 H23 35E sing 56 n n 
C26 H24 35E sing 57 n n 
C27 H25 35E sing 58 n n 
#
_atom_sites.entry_id                     4TPM 
_atom_sites.fract_transf_matrix[1][1]    0.003939 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003939 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003939 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 2001 2001 SO4 SO4 . 
D 2 SO4 A 1 2002 2002 SO4 SO4 . 
E 2 SO4 A 1 2003 2003 SO4 SO4 . 
F 2 SO4 A 1 2004 2004 SO4 SO4 . 
G 2 SO4 A 1 2005 2005 SO4 SO4 . 
H 2 SO4 A 1 2006 2008 SO4 SO4 . 
I 2 SO4 A 1 2007 2009 SO4 SO4 . 
J 3 GOL A 1 2008 1 GOL GOL . 
K 4 35E A 1 2009 1 35E UNL . 
L 5 ZN A 1 2010 3 ZN ZN . 
M 5 ZN A 1 2011 4 ZN ZN . 
N 2 SO4 B 1 2001 2001 SO4 SO4 . 
O 2 SO4 B 1 2002 2002 SO4 SO4 . 
P 2 SO4 B 1 2003 2003 SO4 SO4 . 
Q 2 SO4 B 1 2004 2005 SO4 SO4 . 
R 2 SO4 B 1 2005 2006 SO4 SO4 . 
S 2 SO4 B 1 2006 2007 SO4 SO4 . 
T 2 SO4 B 1 2007 2008 SO4 SO4 . 
U 4 35E B 1 2008 1 35E UNL . 
V 5 ZN B 1 2009 1 ZN ZN . 
W 5 ZN B 1 2010 2 ZN ZN . 
X 6 HOH A 1 2101 22 HOH HOH . 
X 6 HOH A 2 2102 42 HOH HOH . 
X 6 HOH A 3 2103 18 HOH HOH . 
X 6 HOH A 4 2104 1 HOH HOH . 
X 6 HOH A 5 2105 2 HOH HOH . 
X 6 HOH A 6 2106 5 HOH HOH . 
X 6 HOH A 7 2107 6 HOH HOH . 
X 6 HOH A 8 2108 7 HOH HOH . 
X 6 HOH A 9 2109 8 HOH HOH . 
X 6 HOH A 10 2110 9 HOH HOH . 
X 6 HOH A 11 2111 12 HOH HOH . 
X 6 HOH A 12 2112 13 HOH HOH . 
X 6 HOH A 13 2113 16 HOH HOH . 
X 6 HOH A 14 2114 17 HOH HOH . 
X 6 HOH A 15 2115 20 HOH HOH . 
X 6 HOH A 16 2116 26 HOH HOH . 
X 6 HOH A 17 2117 32 HOH HOH . 
X 6 HOH A 18 2118 34 HOH HOH . 
X 6 HOH A 19 2119 44 HOH HOH . 
X 6 HOH A 20 2120 45 HOH HOH . 
X 6 HOH A 21 2121 53 HOH HOH . 
X 6 HOH A 22 2122 58 HOH HOH . 
X 6 HOH A 23 2123 59 HOH HOH . 
X 6 HOH A 24 2124 60 HOH HOH . 
X 6 HOH A 25 2125 61 HOH HOH . 
X 6 HOH A 26 2126 63 HOH HOH . 
X 6 HOH A 27 2127 64 HOH HOH . 
Y 6 HOH B 1 2101 3 HOH HOH . 
Y 6 HOH B 2 2102 35 HOH HOH . 
Y 6 HOH B 3 2103 30 HOH HOH . 
Y 6 HOH B 4 2104 4 HOH HOH . 
Y 6 HOH B 5 2105 10 HOH HOH . 
Y 6 HOH B 6 2106 11 HOH HOH . 
Y 6 HOH B 7 2107 14 HOH HOH . 
Y 6 HOH B 8 2108 15 HOH HOH . 
Y 6 HOH B 9 2109 19 HOH HOH . 
Y 6 HOH B 10 2110 21 HOH HOH . 
Y 6 HOH B 11 2111 23 HOH HOH . 
Y 6 HOH B 12 2112 24 HOH HOH . 
Y 6 HOH B 13 2113 25 HOH HOH . 
Y 6 HOH B 14 2114 27 HOH HOH . 
Y 6 HOH B 15 2115 28 HOH HOH . 
Y 6 HOH B 16 2116 29 HOH HOH . 
Y 6 HOH B 17 2117 31 HOH HOH . 
Y 6 HOH B 18 2118 33 HOH HOH . 
Y 6 HOH B 19 2119 36 HOH HOH . 
Y 6 HOH B 20 2120 37 HOH HOH . 
Y 6 HOH B 21 2121 38 HOH HOH . 
Y 6 HOH B 22 2122 39 HOH HOH . 
Y 6 HOH B 23 2123 40 HOH HOH . 
Y 6 HOH B 24 2124 41 HOH HOH . 
Y 6 HOH B 25 2125 43 HOH HOH . 
Y 6 HOH B 26 2126 46 HOH HOH . 
Y 6 HOH B 27 2127 47 HOH HOH . 
Y 6 HOH B 28 2128 48 HOH HOH . 
Y 6 HOH B 29 2129 49 HOH HOH . 
Y 6 HOH B 30 2130 50 HOH HOH . 
Y 6 HOH B 31 2131 51 HOH HOH . 
Y 6 HOH B 32 2132 52 HOH HOH . 
Y 6 HOH B 33 2133 54 HOH HOH . 
Y 6 HOH B 34 2134 55 HOH HOH . 
Y 6 HOH B 35 2135 56 HOH HOH . 
Y 6 HOH B 36 2136 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 35E . . . U 4 -21.206 47.045 27.766 1 61.13 ? O01 35E 2008 B 1 
HETATM 2 C C02 35E . . . U 4 -21.766 48.32 27.812 1 58.23 ? C02 35E 2008 B 1 
HETATM 3 C C03 35E . . . U 4 -22.982 48.61 26.906 1 58.29 ? C03 35E 2008 B 1 
HETATM 4 C C04 35E . . . U 4 -22.546 48.634 25.508 1 59.22 ? C04 35E 2008 B 1 
HETATM 5 C C05 35E . . . U 4 -23.572 49.172 24.567 1 60.79 ? C05 35E 2008 B 1 
HETATM 6 N N06 35E . . . U 4 -24.402 50.33 25.026 1 62.51 ? N06 35E 2008 B 1 
HETATM 7 C C07 35E . . . U 4 -24.64 50.412 26.456 1 59.5 ? C07 35E 2008 B 1 
HETATM 8 C C08 35E . . . U 4 -23.539 49.923 27.329 1 60.26 ? C08 35E 2008 B 1 
HETATM 9 C C09 35E . . . U 4 -25.19 51.012 24 1 65.14 ? C09 35E 2008 B 1 
HETATM 10 N N10 35E . . . U 4 -25.726 52.196 24.344 1 70.99 ? N10 35E 2008 B 1 
HETATM 11 C C11 35E . . . U 4 -26.476 52.915 23.45 1 72.49 ? C11 35E 2008 B 1 
HETATM 12 C C12 35E . . . U 4 -26.695 52.382 22.151 1 70.85 ? C12 35E 2008 B 1 
HETATM 13 N N13 35E . . . U 4 -26.164 51.186 21.802 1 68.69 ? N13 35E 2008 B 1 
HETATM 14 C C14 35E . . . U 4 -25.418 50.469 22.679 1 66.46 ? C14 35E 2008 B 1 
HETATM 15 O O15 35E . . . U 4 -24.867 49.229 22.312 1 69.35 ? O15 35E 2008 B 1 
HETATM 16 C C16 35E . . . U 4 -25.508 48.617 21.244 1 66.74 ? C16 35E 2008 B 1 
HETATM 17 C C17 35E . . . U 4 -25 47.235 21.085 1 65.79 ? C17 35E 2008 B 1 
HETATM 18 N N18 35E . . . U 4 -24.442 47.585 19.764 1 66.87 ? N18 35E 2008 B 1 
HETATM 19 C C19 35E . . . U 4 -24.836 48.998 19.995 1 65.21 ? C19 35E 2008 B 1 
HETATM 20 C C20 35E . . . U 4 -24.572 46.71 18.622 1 63.98 ? C20 35E 2008 B 1 
HETATM 21 C C21 35E . . . U 4 -24.617 47.249 17.337 1 63.44 ? C21 35E 2008 B 1 
HETATM 22 C C22 35E . . . U 4 -24.763 46.379 16.216 1 62.76 ? C22 35E 2008 B 1 
HETATM 23 C C23 35E . . . U 4 -24.864 44.961 16.439 1 62.52 ? C23 35E 2008 B 1 
HETATM 24 C C24 35E . . . U 4 -25.015 44.055 15.344 1 61.02 ? C24 35E 2008 B 1 
HETATM 25 C C25 35E . . . U 4 -25.111 42.672 15.588 1 58.9 ? C25 35E 2008 B 1 
HETATM 26 C C26 35E . . . U 4 -25.063 42.177 16.918 1 61.24 ? C26 35E 2008 B 1 
HETATM 27 C C27 35E . . . U 4 -24.927 43.054 17.988 1 62.75 ? C27 35E 2008 B 1 
HETATM 28 C C28 35E . . . U 4 -24.82 44.477 17.739 1 64.91 ? C28 35E 2008 B 1 
HETATM 29 N N29 35E . . . U 4 -24.674 45.352 18.821 1 63.89 ? N29 35E 2008 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#