data_4TPM # _model_server_result.job_id R8l2-d91w6r53scE6WmEHg _model_server_result.datetime_utc '2025-01-11 14:51:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tpm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":2009}' # _entry.id 4TPM # _exptl.entry_id 4TPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.466 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-(3-{[1-(quinolin-2-yl)azetidin-3-yl]oxy}pyrazin-2-yl)piperidin-4-yl]methanol' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TPM _cell.length_a 253.878 _cell.length_b 253.878 _cell.length_c 253.878 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,X 1 1,4,5 B,N,O,P,Q,R,S,T,U,V,W,Y 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 4 'crystal symmetry operation' 18_555 z,-x+1/2,-y+1/2 0 0 1 -1 0 0 0 -1 0 0 126.939 126.939 5 'crystal symmetry operation' 48_555 -y+1/2,-z+1/2,x 0 -1 0 0 0 -1 1 0 0 126.939 126.939 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 488 1_555 A SG CYS 64 A CYS 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 60 B CYS 488 1_555 B SG CYS 64 B CYS 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc1 A NE2 HIS 91 A HIS 519 1_555 M ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 A NE2 HIS 125 A HIS 553 1_555 M ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 A OD1 ASP 126 A ASP 554 1_555 L ZN ZN . A ZN 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc4 A OD2 ASP 126 A ASP 554 1_555 L ZN ZN . A ZN 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc5 A OD2 ASP 126 A ASP 554 1_555 M ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc6 A OD1 ASP 236 A ASP 664 1_555 M ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc7 L ZN ZN . A ZN 2010 1_555 X O HOH . A HOH 2123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc8 L ZN ZN . A ZN 2010 1_555 X O HOH . A HOH 2124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? metalc ? metalc9 L ZN ZN . A ZN 2010 1_555 X O HOH . A HOH 2125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc10 B NE2 HIS 91 B HIS 519 1_555 V ZN ZN . B ZN 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc11 B NE2 HIS 125 B HIS 553 1_555 V ZN ZN . B ZN 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc12 B OD2 ASP 126 B ASP 554 1_555 V ZN ZN . B ZN 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc13 B OD1 ASP 126 B ASP 554 1_555 W ZN ZN . B ZN 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc14 B OD1 ASP 236 B ASP 664 1_555 V ZN ZN . B ZN 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc15 V ZN ZN . B ZN 2009 1_555 Y O HOH . B HOH 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc16 W ZN ZN . B ZN 2010 1_555 Y O HOH . B HOH 2134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc17 W ZN ZN . B ZN 2010 1_555 Y O HOH . B HOH 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc18 W ZN ZN . B ZN 2010 1_555 Y O HOH . B HOH 2136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? # _chem_comp.formula 'C22 H25 N5 O2' _chem_comp.formula_weight 391.466 _chem_comp.id 35E _chem_comp.mon_nstd_flag . _chem_comp.name '[1-(3-{[1-(quinolin-2-yl)azetidin-3-yl]oxy}pyrazin-2-yl)piperidin-4-yl]methanol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 O01 35E sing 1 n n C02 C03 35E sing 2 n n C08 C03 35E sing 3 n n C08 C07 35E sing 4 n n C03 C04 35E sing 5 n n C07 N06 35E sing 6 n n C04 C05 35E sing 7 n n N06 C05 35E sing 8 n n N06 C09 35E sing 9 n n N10 C09 35E doub 10 n y N10 C11 35E sing 11 n y C09 C14 35E sing 12 n y C11 C12 35E doub 13 n y C14 O15 35E sing 14 n n C14 N13 35E doub 15 n y O15 C16 35E sing 16 n n C12 N13 35E sing 17 n y C16 C17 35E sing 18 n n C16 C19 35E sing 19 n n C17 N18 35E sing 20 n n C19 N18 35E sing 21 n n N18 C20 35E sing 22 n n N29 C20 35E doub 23 n y N29 C28 35E sing 24 n y C20 C21 35E sing 25 n y C27 C28 35E doub 26 n y C27 C26 35E sing 27 n y C28 C23 35E sing 28 n y C21 C22 35E doub 29 n y C26 C25 35E doub 30 n y C23 C22 35E sing 31 n y C23 C24 35E doub 32 n y C25 C24 35E sing 33 n y O01 H1 35E sing 34 n n C02 H2 35E sing 35 n n C02 H3 35E sing 36 n n C03 H4 35E sing 37 n n C04 H5 35E sing 38 n n C04 H6 35E sing 39 n n C05 H7 35E sing 40 n n C05 H8 35E sing 41 n n C07 H9 35E sing 42 n n C07 H10 35E sing 43 n n C08 H11 35E sing 44 n n C08 H12 35E sing 45 n n C11 H13 35E sing 46 n n C12 H14 35E sing 47 n n C16 H15 35E sing 48 n n C17 H16 35E sing 49 n n C17 H17 35E sing 50 n n C19 H18 35E sing 51 n n C19 H19 35E sing 52 n n C21 H20 35E sing 53 n n C22 H21 35E sing 54 n n C24 H22 35E sing 55 n n C25 H23 35E sing 56 n n C26 H24 35E sing 57 n n C27 H25 35E sing 58 n n # _atom_sites.entry_id 4TPM _atom_sites.fract_transf_matrix[1][1] 0.003939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 2001 2001 SO4 SO4 . D 2 SO4 A 1 2002 2002 SO4 SO4 . E 2 SO4 A 1 2003 2003 SO4 SO4 . F 2 SO4 A 1 2004 2004 SO4 SO4 . G 2 SO4 A 1 2005 2005 SO4 SO4 . H 2 SO4 A 1 2006 2008 SO4 SO4 . I 2 SO4 A 1 2007 2009 SO4 SO4 . J 3 GOL A 1 2008 1 GOL GOL . K 4 35E A 1 2009 1 35E UNL . L 5 ZN A 1 2010 3 ZN ZN . M 5 ZN A 1 2011 4 ZN ZN . N 2 SO4 B 1 2001 2001 SO4 SO4 . O 2 SO4 B 1 2002 2002 SO4 SO4 . P 2 SO4 B 1 2003 2003 SO4 SO4 . Q 2 SO4 B 1 2004 2005 SO4 SO4 . R 2 SO4 B 1 2005 2006 SO4 SO4 . S 2 SO4 B 1 2006 2007 SO4 SO4 . T 2 SO4 B 1 2007 2008 SO4 SO4 . U 4 35E B 1 2008 1 35E UNL . V 5 ZN B 1 2009 1 ZN ZN . W 5 ZN B 1 2010 2 ZN ZN . X 6 HOH A 1 2101 22 HOH HOH . X 6 HOH A 2 2102 42 HOH HOH . X 6 HOH A 3 2103 18 HOH HOH . X 6 HOH A 4 2104 1 HOH HOH . X 6 HOH A 5 2105 2 HOH HOH . X 6 HOH A 6 2106 5 HOH HOH . X 6 HOH A 7 2107 6 HOH HOH . X 6 HOH A 8 2108 7 HOH HOH . X 6 HOH A 9 2109 8 HOH HOH . X 6 HOH A 10 2110 9 HOH HOH . X 6 HOH A 11 2111 12 HOH HOH . X 6 HOH A 12 2112 13 HOH HOH . X 6 HOH A 13 2113 16 HOH HOH . X 6 HOH A 14 2114 17 HOH HOH . X 6 HOH A 15 2115 20 HOH HOH . X 6 HOH A 16 2116 26 HOH HOH . X 6 HOH A 17 2117 32 HOH HOH . X 6 HOH A 18 2118 34 HOH HOH . X 6 HOH A 19 2119 44 HOH HOH . X 6 HOH A 20 2120 45 HOH HOH . X 6 HOH A 21 2121 53 HOH HOH . X 6 HOH A 22 2122 58 HOH HOH . X 6 HOH A 23 2123 59 HOH HOH . X 6 HOH A 24 2124 60 HOH HOH . X 6 HOH A 25 2125 61 HOH HOH . X 6 HOH A 26 2126 63 HOH HOH . X 6 HOH A 27 2127 64 HOH HOH . Y 6 HOH B 1 2101 3 HOH HOH . Y 6 HOH B 2 2102 35 HOH HOH . Y 6 HOH B 3 2103 30 HOH HOH . Y 6 HOH B 4 2104 4 HOH HOH . Y 6 HOH B 5 2105 10 HOH HOH . Y 6 HOH B 6 2106 11 HOH HOH . Y 6 HOH B 7 2107 14 HOH HOH . Y 6 HOH B 8 2108 15 HOH HOH . Y 6 HOH B 9 2109 19 HOH HOH . Y 6 HOH B 10 2110 21 HOH HOH . Y 6 HOH B 11 2111 23 HOH HOH . Y 6 HOH B 12 2112 24 HOH HOH . Y 6 HOH B 13 2113 25 HOH HOH . Y 6 HOH B 14 2114 27 HOH HOH . Y 6 HOH B 15 2115 28 HOH HOH . Y 6 HOH B 16 2116 29 HOH HOH . Y 6 HOH B 17 2117 31 HOH HOH . Y 6 HOH B 18 2118 33 HOH HOH . Y 6 HOH B 19 2119 36 HOH HOH . Y 6 HOH B 20 2120 37 HOH HOH . Y 6 HOH B 21 2121 38 HOH HOH . Y 6 HOH B 22 2122 39 HOH HOH . Y 6 HOH B 23 2123 40 HOH HOH . Y 6 HOH B 24 2124 41 HOH HOH . Y 6 HOH B 25 2125 43 HOH HOH . Y 6 HOH B 26 2126 46 HOH HOH . Y 6 HOH B 27 2127 47 HOH HOH . Y 6 HOH B 28 2128 48 HOH HOH . Y 6 HOH B 29 2129 49 HOH HOH . Y 6 HOH B 30 2130 50 HOH HOH . Y 6 HOH B 31 2131 51 HOH HOH . Y 6 HOH B 32 2132 52 HOH HOH . Y 6 HOH B 33 2133 54 HOH HOH . Y 6 HOH B 34 2134 55 HOH HOH . Y 6 HOH B 35 2135 56 HOH HOH . Y 6 HOH B 36 2136 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 35E . . . K 4 15.778 84.811 34.854 1 81.72 ? O01 35E 2009 A 1 HETATM 2 C C02 35E . . . K 4 14.807 85.679 34.314 1 77.88 ? C02 35E 2009 A 1 HETATM 3 C C03 35E . . . K 4 14.171 86.759 35.245 1 73.28 ? C03 35E 2009 A 1 HETATM 4 C C04 35E . . . K 4 14.093 86.315 36.642 1 71.2 ? C04 35E 2009 A 1 HETATM 5 C C05 35E . . . K 4 13.588 87.399 37.525 1 69.05 ? C05 35E 2009 A 1 HETATM 6 N N06 35E . . . K 4 12.391 88.158 37.041 1 69.84 ? N06 35E 2009 A 1 HETATM 7 C C07 35E . . . K 4 12.226 88.237 35.594 1 72.2 ? C07 35E 2009 A 1 HETATM 8 C C08 35E . . . K 4 12.812 87.131 34.778 1 72.65 ? C08 35E 2009 A 1 HETATM 9 C C09 35E . . . K 4 11.66 88.932 38.047 1 67.57 ? C09 35E 2009 A 1 HETATM 10 N N10 35E . . . K 4 10.511 89.51 37.654 1 71.36 ? N10 35E 2009 A 1 HETATM 11 C C11 35E . . . K 4 9.75 90.253 38.523 1 69.53 ? C11 35E 2009 A 1 HETATM 12 C C12 35E . . . K 4 10.202 90.408 39.861 1 68.71 ? C12 35E 2009 A 1 HETATM 13 N N13 35E . . . K 4 11.363 89.833 40.266 1 69.34 ? N13 35E 2009 A 1 HETATM 14 C C14 35E . . . K 4 12.122 89.101 39.407 1 67.75 ? C14 35E 2009 A 1 HETATM 15 O O15 35E . . . K 4 13.321 88.513 39.836 1 68.49 ? O15 35E 2009 A 1 HETATM 16 C C16 35E . . . K 4 13.963 89.244 40.831 1 69.4 ? C16 35E 2009 A 1 HETATM 17 C C17 35E . . . K 4 15.368 88.789 41.016 1 68.08 ? C17 35E 2009 A 1 HETATM 18 N N18 35E . . . K 4 15.025 88.22 42.329 1 69.57 ? N18 35E 2009 A 1 HETATM 19 C C19 35E . . . K 4 13.622 88.672 42.138 1 67.56 ? C19 35E 2009 A 1 HETATM 20 C C20 35E . . . K 4 15.901 88.274 43.475 1 70.48 ? C20 35E 2009 A 1 HETATM 21 C C21 35E . . . K 4 15.341 88.199 44.744 1 69.94 ? C21 35E 2009 A 1 HETATM 22 C C22 35E . . . K 4 16.187 88.27 45.885 1 76.43 ? C22 35E 2009 A 1 HETATM 23 C C23 35E . . . K 4 17.605 88.422 45.708 1 75.28 ? C23 35E 2009 A 1 HETATM 24 C C24 35E . . . K 4 18.478 88.497 46.836 1 77.06 ? C24 35E 2009 A 1 HETATM 25 C C25 35E . . . K 4 19.862 88.65 46.641 1 80.87 ? C25 35E 2009 A 1 HETATM 26 C C26 35E . . . K 4 20.389 88.73 45.322 1 79.88 ? C26 35E 2009 A 1 HETATM 27 C C27 35E . . . K 4 19.537 88.655 44.229 1 77.13 ? C27 35E 2009 A 1 HETATM 28 C C28 35E . . . K 4 18.114 88.496 44.426 1 76.13 ? C28 35E 2009 A 1 HETATM 29 N N29 35E . . . K 4 17.26 88.423 43.316 1 76.25 ? N29 35E 2009 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #