data_4TQ4 # _model_server_result.job_id 3gn9sCTKZRjJX8B7sR-EGA _model_server_result.datetime_utc '2025-03-05 19:35:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 4TQ4 # _exptl.entry_id 4TQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.092 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYLALLYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.13 _cell.angle_gamma 90 _cell.entry_id 4TQ4 _cell.length_a 54.605 _cell.length_b 218.922 _cell.length_c 65.292 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,Q 1 1 B,H,I,J,R 2 1 C,K,L,M,S 3 1 D,N,O,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 M N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 68 A ASN 68 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A OD2 ASP 72 A ASP 72 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc3 A OD2 ASP 198 A ASP 198 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 A OD1 ASP 202 A ASP 202 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc5 E MG MG . A MG 401 1_555 G O2A DMA . A DMA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc6 E MG MG . A MG 401 1_555 G O3B DMA . A DMA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 E MG MG . A MG 401 1_555 Q O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc8 E MG MG . A MG 401 1_555 Q O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc9 F MG MG . A MG 402 1_555 Q O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc10 F MG MG . A MG 402 1_555 Q O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc11 F MG MG . A MG 402 1_555 Q O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc12 F MG MG . A MG 402 1_555 Q O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc13 B OD1 ASN 68 B ASN 68 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc14 B OD2 ASP 72 B ASP 72 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc15 B OD2 ASP 198 B ASP 198 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc16 B OD1 ASP 202 B ASP 202 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc17 H MG MG . B MG 401 1_555 J O2A DMA . B DMA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc18 H MG MG . B MG 401 1_555 J O3B DMA . B DMA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc19 C OD1 ASN 68 C ASN 68 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc20 C OD2 ASP 72 C ASP 72 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc21 C OD2 ASP 198 C ASP 198 1_555 K MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc22 C OD1 ASP 202 C ASP 202 1_555 K MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc23 K MG MG . C MG 401 1_555 S O HOH . C HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc24 L MG MG . C MG 402 1_555 M O3B DMA . C DMA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc25 L MG MG . C MG 402 1_555 M O1A DMA . C DMA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc26 L MG MG . C MG 402 1_555 S O HOH . C HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc27 D OD2 ASP 72 D ASP 72 1_555 N MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc28 D OD2 ASP 198 D ASP 198 1_555 O MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc29 D OD1 ASP 202 D ASP 202 1_555 O MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc30 N MG MG . D MG 401 1_555 P O1B DMA . D DMA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc31 N MG MG . D MG 401 1_555 P O3B DMA . D DMA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc32 N MG MG . D MG 401 1_555 P O1A DMA . D DMA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc33 N MG MG . D MG 401 1_555 T O HOH . D HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc34 O MG MG . D MG 402 1_555 T O HOH . D HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? # _chem_comp.formula 'C5 H12 O7 P2' _chem_comp.formula_weight 246.092 _chem_comp.id DMA _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYLALLYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DMA sing 83 n n C1 C2 DMA sing 84 n n C1 H11 DMA sing 85 n n C1 H12 DMA sing 86 n n O1 PA DMA sing 87 n n C2 C3 DMA doub 88 n n C2 H2 DMA sing 89 n n C3 C4 DMA sing 90 n n C3 C5 DMA sing 91 n n C4 H41 DMA sing 92 n n C4 H42 DMA sing 93 n n C4 H43 DMA sing 94 n n C5 H51 DMA sing 95 n n C5 H52 DMA sing 96 n n C5 H53 DMA sing 97 n n PA O1A DMA doub 98 n n PA O2A DMA sing 99 n n PA O3A DMA sing 100 n n O2A HOA2 DMA sing 101 n n O3A PB DMA sing 102 n n PB O1B DMA doub 103 n n PB O2B DMA sing 104 n n PB O3B DMA sing 105 n n O2B HOB2 DMA sing 106 n n O3B HOB3 DMA sing 107 n n # _atom_sites.entry_id 4TQ4 _atom_sites.fract_transf_matrix[1][1] 0.018313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000042 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 401 1 MG MG . F 2 MG A 1 402 2 MG MG . G 3 DMA A 1 403 1 DMA DMA . H 2 MG B 1 401 3 MG MG . I 2 MG B 1 402 4 MG MG . J 3 DMA B 1 403 2 DMA DMA . K 2 MG C 1 401 5 MG MG . L 2 MG C 1 402 6 MG MG . M 3 DMA C 1 403 3 DMA DMA . N 2 MG D 1 401 7 MG MG . O 2 MG D 1 402 8 MG MG . P 3 DMA D 1 403 4 DMA DMA . Q 4 HOH A 1 501 8 HOH HOH . Q 4 HOH A 2 502 9 HOH HOH . Q 4 HOH A 3 503 11 HOH HOH . Q 4 HOH A 4 504 13 HOH HOH . Q 4 HOH A 5 505 14 HOH HOH . Q 4 HOH A 6 506 15 HOH HOH . Q 4 HOH A 7 507 23 HOH HOH . Q 4 HOH A 8 508 24 HOH HOH . Q 4 HOH A 9 509 25 HOH HOH . Q 4 HOH A 10 510 33 HOH HOH . Q 4 HOH A 11 511 34 HOH HOH . Q 4 HOH A 12 512 35 HOH HOH . R 4 HOH B 1 501 21 HOH HOH . R 4 HOH B 2 502 22 HOH HOH . S 4 HOH C 1 501 6 HOH HOH . S 4 HOH C 2 502 3 HOH HOH . S 4 HOH C 3 503 4 HOH HOH . S 4 HOH C 4 504 5 HOH HOH . S 4 HOH C 5 505 7 HOH HOH . S 4 HOH C 6 506 26 HOH HOH . S 4 HOH C 7 507 27 HOH HOH . T 4 HOH D 1 501 17 HOH HOH . T 4 HOH D 2 502 18 HOH HOH . T 4 HOH D 3 503 19 HOH HOH . T 4 HOH D 4 504 20 HOH HOH . T 4 HOH D 5 505 29 HOH HOH . T 4 HOH D 6 506 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMA . . . G 3 7.272 19.092 30.417 1 46.78 ? C1 DMA 403 A 1 HETATM 2 O O1 DMA . . . G 3 6.673 19.907 29.397 1 47.02 ? O1 DMA 403 A 1 HETATM 3 C C2 DMA . . . G 3 8.315 19.875 31.176 1 52.13 ? C2 DMA 403 A 1 HETATM 4 C C3 DMA . . . G 3 9.622 19.599 31.072 1 50.13 ? C3 DMA 403 A 1 HETATM 5 C C4 DMA . . . G 3 10.634 20.394 31.84 1 45.42 ? C4 DMA 403 A 1 HETATM 6 C C5 DMA . . . G 3 10.082 18.5 30.176 1 48.85 ? C5 DMA 403 A 1 HETATM 7 P PA DMA . . . G 3 5.081 19.791 29.121 1 52.57 ? PA DMA 403 A 1 HETATM 8 O O1A DMA . . . G 3 4.827 19.943 27.636 1 54.63 ? O1A DMA 403 A 1 HETATM 9 O O2A DMA . . . G 3 4.354 20.701 30.086 1 51.48 ? O2A DMA 403 A 1 HETATM 10 O O3A DMA . . . G 3 4.802 18.251 29.481 1 44.7 ? O3A DMA 403 A 1 HETATM 11 P PB DMA . . . G 3 3.927 17.757 30.735 1 55.68 ? PB DMA 403 A 1 HETATM 12 O O1B DMA . . . G 3 2.493 17.995 30.315 1 52.47 ? O1B DMA 403 A 1 HETATM 13 O O2B DMA . . . G 3 4.329 16.306 30.892 1 52.85 ? O2B DMA 403 A 1 HETATM 14 O O3B DMA . . . G 3 4.421 18.626 31.88 1 57.1 ? O3B DMA 403 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #