data_4TQD # _model_server_result.job_id L2AB8WmCRiOWaBrJf9g8CQ _model_server_result.datetime_utc '2025-01-11 04:34:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 4TQD # _exptl.entry_id 4TQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4TQD _cell.length_a 104.7 _cell.length_b 104.7 _cell.length_c 70.66 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 52.35 90.67286 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 233 A GLU 396 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc2 A OE1 GLU 233 A GLU 396 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 A OG SER 236 A SER 399 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 B MG MG . A MG 501 1_555 E O2G ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc5 B MG MG . A MG 501 1_555 E O2B ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc6 B MG MG . A MG 501 1_555 N O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc7 B MG MG . A MG 501 1_555 N O HOH . A HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc8 B MG MG . A MG 501 1_555 N O HOH . A HOH 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc9 B MG MG . A MG 501 1_555 N O HOH . A HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc10 C MG MG . A MG 502 1_555 E O1A ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 C MG MG . A MG 502 1_555 E O1B ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc12 C MG MG . A MG 502 1_555 N O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc13 C MG MG . A MG 502 1_555 N O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc14 D MG MG . A MG 503 1_555 E O3G ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc15 D MG MG . A MG 503 1_555 E O1B ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc16 D MG MG . A MG 503 1_555 N O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc17 D MG MG . A MG 503 1_555 N O HOH . A HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc18 D MG MG . A MG 503 1_555 N O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 93 n n PG O2G ATP sing 94 n n PG O3G ATP sing 95 n n PG O3B ATP sing 96 n n O2G HOG2 ATP sing 97 n n O3G HOG3 ATP sing 98 n n PB O1B ATP doub 99 n n PB O2B ATP sing 100 n n PB O3B ATP sing 101 n n PB O3A ATP sing 102 n n O2B HOB2 ATP sing 103 n n PA O1A ATP doub 104 n n PA O2A ATP sing 105 n n PA O3A ATP sing 106 n n PA O5' ATP sing 107 n n O2A HOA2 ATP sing 108 n n O5' C5' ATP sing 109 n n C5' C4' ATP sing 110 n n C5' "H5'1" ATP sing 111 n n C5' "H5'2" ATP sing 112 n n C4' O4' ATP sing 113 n n C4' C3' ATP sing 114 n n C4' H4' ATP sing 115 n n O4' C1' ATP sing 116 n n C3' O3' ATP sing 117 n n C3' C2' ATP sing 118 n n C3' H3' ATP sing 119 n n O3' HO3' ATP sing 120 n n C2' O2' ATP sing 121 n n C2' C1' ATP sing 122 n n C2' H2' ATP sing 123 n n O2' HO2' ATP sing 124 n n C1' N9 ATP sing 125 n n C1' H1' ATP sing 126 n n N9 C8 ATP sing 127 n y N9 C4 ATP sing 128 n y C8 N7 ATP doub 129 n y C8 H8 ATP sing 130 n n N7 C5 ATP sing 131 n y C5 C6 ATP sing 132 n y C5 C4 ATP doub 133 n y C6 N6 ATP sing 134 n n C6 N1 ATP doub 135 n y N6 HN61 ATP sing 136 n n N6 HN62 ATP sing 137 n n N1 C2 ATP sing 138 n y C2 N3 ATP doub 139 n y C2 H2 ATP sing 140 n n N3 C4 ATP sing 141 n y # _atom_sites.entry_id 4TQD _atom_sites.fract_transf_matrix[1][1] 0.009551 _atom_sites.fract_transf_matrix[1][2] 0.005514 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 501 MG MG . C 2 MG A 1 502 502 MG MG . D 2 MG A 1 503 503 MG MG . E 3 ATP A 1 504 504 ATP ATP . F 4 33S A 1 505 505 33S 33S . G 5 EDO A 1 506 506 EDO EDO . H 5 EDO A 1 507 507 EDO EDO . I 5 EDO A 1 508 508 EDO EDO . J 5 EDO A 1 509 509 EDO EDO . K 5 EDO A 1 510 510 EDO EDO . L 5 EDO A 1 511 511 EDO EDO . M 5 EDO A 1 512 512 EDO EDO . N 6 HOH A 1 601 603 HOH HOH . N 6 HOH A 2 602 602 HOH HOH . N 6 HOH A 3 603 611 HOH HOH . N 6 HOH A 4 604 605 HOH HOH . N 6 HOH A 5 605 616 HOH HOH . N 6 HOH A 6 606 607 HOH HOH . N 6 HOH A 7 607 601 HOH HOH . N 6 HOH A 8 608 608 HOH HOH . N 6 HOH A 9 609 610 HOH HOH . N 6 HOH A 10 610 606 HOH HOH . N 6 HOH A 11 611 609 HOH HOH . N 6 HOH A 12 612 612 HOH HOH . N 6 HOH A 13 613 614 HOH HOH . N 6 HOH A 14 614 604 HOH HOH . N 6 HOH A 15 615 615 HOH HOH . N 6 HOH A 16 616 619 HOH HOH . N 6 HOH A 17 617 617 HOH HOH . N 6 HOH A 18 618 618 HOH HOH . N 6 HOH A 19 619 613 HOH HOH . N 6 HOH A 20 620 621 HOH HOH . N 6 HOH A 21 621 626 HOH HOH . N 6 HOH A 22 622 623 HOH HOH . N 6 HOH A 23 623 620 HOH HOH . N 6 HOH A 24 624 625 HOH HOH . N 6 HOH A 25 625 624 HOH HOH . N 6 HOH A 26 626 636 HOH HOH . N 6 HOH A 27 627 633 HOH HOH . N 6 HOH A 28 628 634 HOH HOH . N 6 HOH A 29 629 622 HOH HOH . N 6 HOH A 30 630 628 HOH HOH . N 6 HOH A 31 631 635 HOH HOH . N 6 HOH A 32 632 630 HOH HOH . N 6 HOH A 33 633 640 HOH HOH . N 6 HOH A 34 634 637 HOH HOH . N 6 HOH A 35 635 631 HOH HOH . N 6 HOH A 36 636 639 HOH HOH . N 6 HOH A 37 637 642 HOH HOH . N 6 HOH A 38 638 632 HOH HOH . N 6 HOH A 39 639 638 HOH HOH . N 6 HOH A 40 640 641 HOH HOH . N 6 HOH A 41 641 627 HOH HOH . N 6 HOH A 42 642 645 HOH HOH . N 6 HOH A 43 643 629 HOH HOH . N 6 HOH A 44 644 643 HOH HOH . N 6 HOH A 45 645 644 HOH HOH . N 6 HOH A 46 646 646 HOH HOH . N 6 HOH A 47 647 647 HOH HOH . N 6 HOH A 48 648 648 HOH HOH . N 6 HOH A 49 649 650 HOH HOH . N 6 HOH A 50 650 649 HOH HOH . N 6 HOH A 51 651 651 HOH HOH . N 6 HOH A 52 652 652 HOH HOH . N 6 HOH A 53 653 653 HOH HOH . N 6 HOH A 54 654 654 HOH HOH . N 6 HOH A 55 655 655 HOH HOH . N 6 HOH A 56 656 656 HOH HOH . N 6 HOH A 57 657 657 HOH HOH . N 6 HOH A 58 658 658 HOH HOH . N 6 HOH A 59 659 659 HOH HOH . N 6 HOH A 60 660 660 HOH HOH . N 6 HOH A 61 661 661 HOH HOH . N 6 HOH A 62 662 662 HOH HOH . N 6 HOH A 63 663 663 HOH HOH . N 6 HOH A 64 664 664 HOH HOH . N 6 HOH A 65 665 665 HOH HOH . N 6 HOH A 66 666 666 HOH HOH . N 6 HOH A 67 667 667 HOH HOH . N 6 HOH A 68 668 668 HOH HOH . N 6 HOH A 69 669 669 HOH HOH . N 6 HOH A 70 670 670 HOH HOH . N 6 HOH A 71 671 671 HOH HOH . N 6 HOH A 72 672 672 HOH HOH . N 6 HOH A 73 673 673 HOH HOH . N 6 HOH A 74 674 674 HOH HOH . N 6 HOH A 75 675 675 HOH HOH . N 6 HOH A 76 676 676 HOH HOH . N 6 HOH A 77 677 677 HOH HOH . N 6 HOH A 78 678 678 HOH HOH . N 6 HOH A 79 679 679 HOH HOH . N 6 HOH A 80 680 680 HOH HOH . N 6 HOH A 81 681 681 HOH HOH . N 6 HOH A 82 682 682 HOH HOH . N 6 HOH A 83 683 683 HOH HOH . N 6 HOH A 84 684 684 HOH HOH . N 6 HOH A 85 685 685 HOH HOH . N 6 HOH A 86 686 686 HOH HOH . N 6 HOH A 87 687 687 HOH HOH . N 6 HOH A 88 688 688 HOH HOH . N 6 HOH A 89 689 689 HOH HOH . N 6 HOH A 90 690 690 HOH HOH . N 6 HOH A 91 691 691 HOH HOH . N 6 HOH A 92 692 692 HOH HOH . N 6 HOH A 93 693 693 HOH HOH . N 6 HOH A 94 694 694 HOH HOH . N 6 HOH A 95 695 695 HOH HOH . N 6 HOH A 96 696 696 HOH HOH . N 6 HOH A 97 697 697 HOH HOH . N 6 HOH A 98 698 698 HOH HOH . N 6 HOH A 99 699 699 HOH HOH . N 6 HOH A 100 700 700 HOH HOH . N 6 HOH A 101 701 701 HOH HOH . N 6 HOH A 102 702 702 HOH HOH . N 6 HOH A 103 703 703 HOH HOH . N 6 HOH A 104 704 704 HOH HOH . N 6 HOH A 105 705 705 HOH HOH . N 6 HOH A 106 706 706 HOH HOH . N 6 HOH A 107 707 707 HOH HOH . N 6 HOH A 108 708 708 HOH HOH . N 6 HOH A 109 709 709 HOH HOH . N 6 HOH A 110 710 710 HOH HOH . N 6 HOH A 111 711 711 HOH HOH . N 6 HOH A 112 712 712 HOH HOH . N 6 HOH A 113 713 713 HOH HOH . N 6 HOH A 114 714 714 HOH HOH . N 6 HOH A 115 715 715 HOH HOH . N 6 HOH A 116 716 716 HOH HOH . N 6 HOH A 117 717 717 HOH HOH . N 6 HOH A 118 718 718 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 3 9.468 34.138 36.045 1 40.26 ? PG ATP 504 A 1 HETATM 2 O O1G ATP . . . E 3 9.974 33.16 35.027 1 37.2 ? O1G ATP 504 A 1 HETATM 3 O O2G ATP . . . E 3 10.248 34.362 37.325 1 37.71 ? O2G ATP 504 A 1 HETATM 4 O O3G ATP . . . E 3 7.99 33.963 36.312 1 46.1 ? O3G ATP 504 A 1 HETATM 5 P PB ATP . . . E 3 9.107 36.958 35.868 1 39.53 ? PB ATP 504 A 1 HETATM 6 O O1B ATP . . . E 3 7.637 37.112 35.557 1 44.09 ? O1B ATP 504 A 1 HETATM 7 O O2B ATP . . . E 3 9.602 37.152 37.273 1 43.69 ? O2B ATP 504 A 1 HETATM 8 O O3B ATP . . . E 3 9.636 35.554 35.258 1 41.13 ? O3B ATP 504 A 1 HETATM 9 P PA ATP . . . E 3 9.46 39.475 34.5 1 39.13 ? PA ATP 504 A 1 HETATM 10 O O1A ATP . . . E 3 8.17 39.443 33.739 1 44.23 ? O1A ATP 504 A 1 HETATM 11 O O2A ATP . . . E 3 9.588 40.372 35.691 1 42.89 ? O2A ATP 504 A 1 HETATM 12 O O3A ATP . . . E 3 9.935 37.993 34.923 1 42.36 ? O3A ATP 504 A 1 HETATM 13 O O5' ATP . . . E 3 10.648 39.88 33.468 1 34.37 ? O5' ATP 504 A 1 HETATM 14 C C5' ATP . . . E 3 10.477 39.933 32.062 1 31.6 ? C5' ATP 504 A 1 HETATM 15 C C4' ATP . . . E 3 11.251 38.782 31.409 1 35.63 ? C4' ATP 504 A 1 HETATM 16 O O4' ATP . . . E 3 12.599 38.699 31.887 1 37.49 ? O4' ATP 504 A 1 HETATM 17 C C3' ATP . . . E 3 10.685 37.426 31.791 1 34.16 ? C3' ATP 504 A 1 HETATM 18 O O3' ATP . . . E 3 9.58 37.065 30.967 1 37.48 ? O3' ATP 504 A 1 HETATM 19 C C2' ATP . . . E 3 11.862 36.496 31.564 1 37.61 ? C2' ATP 504 A 1 HETATM 20 O O2' ATP . . . E 3 11.974 36.191 30.172 1 36.66 ? O2' ATP 504 A 1 HETATM 21 C C1' ATP . . . E 3 13.069 37.347 31.872 1 34.84 ? C1' ATP 504 A 1 HETATM 22 N N9 ATP . . . E 3 13.558 37.023 33.226 1 41.31 ? N9 ATP 504 A 1 HETATM 23 C C8 ATP . . . E 3 13.016 37.476 34.389 1 35.17 ? C8 ATP 504 A 1 HETATM 24 N N7 ATP . . . E 3 13.731 36.984 35.445 1 37.11 ? N7 ATP 504 A 1 HETATM 25 C C5 ATP . . . E 3 14.717 36.217 34.95 1 37.28 ? C5 ATP 504 A 1 HETATM 26 C C6 ATP . . . E 3 15.81 35.411 35.506 1 32.69 ? C6 ATP 504 A 1 HETATM 27 N N6 ATP . . . E 3 16 35.355 36.835 1 33.15 ? N6 ATP 504 A 1 HETATM 28 N N1 ATP . . . E 3 16.621 34.783 34.633 1 36.7 ? N1 ATP 504 A 1 HETATM 29 C C2 ATP . . . E 3 16.466 34.839 33.296 1 35.83 ? C2 ATP 504 A 1 HETATM 30 N N3 ATP . . . E 3 15.503 35.559 32.711 1 32.85 ? N3 ATP 504 A 1 HETATM 31 C C4 ATP . . . E 3 14.615 36.25 33.483 1 32.94 ? C4 ATP 504 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #