data_4TQD
#
_model_server_result.job_id            xgAr58h_aXQQXw078rYa5A 
_model_server_result.datetime_utc      '2025-01-11 04:46:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4tqd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":508}' 
#
_entry.id    4TQD 
#
_exptl.entry_id    4TQD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4TQD 
_cell.length_a            104.7 
_cell.length_b            104.7 
_cell.length_c            70.66 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TQD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 52.35 90.67286 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 233 A GLU 396 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc2 A OE1 GLU 233 A GLU 396 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc3 A OG SER 236 A SER 399 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc4 B MG MG . A MG 501 1_555 E O2G ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc5 B MG MG . A MG 501 1_555 E O2B ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc6 B MG MG . A MG 501 1_555 N O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc7 B MG MG . A MG 501 1_555 N O HOH . A HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc8 B MG MG . A MG 501 1_555 N O HOH . A HOH 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc9 B MG MG . A MG 501 1_555 N O HOH . A HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc10 C MG MG . A MG 502 1_555 E O1A ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc11 C MG MG . A MG 502 1_555 E O1B ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc12 C MG MG . A MG 502 1_555 N O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc13 C MG MG . A MG 502 1_555 N O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc14 D MG MG . A MG 503 1_555 E O3G ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc15 D MG MG . A MG 503 1_555 E O1B ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc16 D MG MG . A MG 503 1_555 N O HOH . A HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? 
metalc ? metalc17 D MG MG . A MG 503 1_555 N O HOH . A HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc18 D MG MG . A MG 503 1_555 N O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 155 n n 
C1 C2 EDO sing 156 n n 
C1 H11 EDO sing 157 n n 
C1 H12 EDO sing 158 n n 
O1 HO1 EDO sing 159 n n 
C2 O2 EDO sing 160 n n 
C2 H21 EDO sing 161 n n 
C2 H22 EDO sing 162 n n 
O2 HO2 EDO sing 163 n n 
#
_atom_sites.entry_id                     4TQD 
_atom_sites.fract_transf_matrix[1][1]    0.009551 
_atom_sites.fract_transf_matrix[1][2]    0.005514 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011029 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014152 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 501 501 MG MG . 
C 2 MG A 1 502 502 MG MG . 
D 2 MG A 1 503 503 MG MG . 
E 3 ATP A 1 504 504 ATP ATP . 
F 4 33S A 1 505 505 33S 33S . 
G 5 EDO A 1 506 506 EDO EDO . 
H 5 EDO A 1 507 507 EDO EDO . 
I 5 EDO A 1 508 508 EDO EDO . 
J 5 EDO A 1 509 509 EDO EDO . 
K 5 EDO A 1 510 510 EDO EDO . 
L 5 EDO A 1 511 511 EDO EDO . 
M 5 EDO A 1 512 512 EDO EDO . 
N 6 HOH A 1 601 603 HOH HOH . 
N 6 HOH A 2 602 602 HOH HOH . 
N 6 HOH A 3 603 611 HOH HOH . 
N 6 HOH A 4 604 605 HOH HOH . 
N 6 HOH A 5 605 616 HOH HOH . 
N 6 HOH A 6 606 607 HOH HOH . 
N 6 HOH A 7 607 601 HOH HOH . 
N 6 HOH A 8 608 608 HOH HOH . 
N 6 HOH A 9 609 610 HOH HOH . 
N 6 HOH A 10 610 606 HOH HOH . 
N 6 HOH A 11 611 609 HOH HOH . 
N 6 HOH A 12 612 612 HOH HOH . 
N 6 HOH A 13 613 614 HOH HOH . 
N 6 HOH A 14 614 604 HOH HOH . 
N 6 HOH A 15 615 615 HOH HOH . 
N 6 HOH A 16 616 619 HOH HOH . 
N 6 HOH A 17 617 617 HOH HOH . 
N 6 HOH A 18 618 618 HOH HOH . 
N 6 HOH A 19 619 613 HOH HOH . 
N 6 HOH A 20 620 621 HOH HOH . 
N 6 HOH A 21 621 626 HOH HOH . 
N 6 HOH A 22 622 623 HOH HOH . 
N 6 HOH A 23 623 620 HOH HOH . 
N 6 HOH A 24 624 625 HOH HOH . 
N 6 HOH A 25 625 624 HOH HOH . 
N 6 HOH A 26 626 636 HOH HOH . 
N 6 HOH A 27 627 633 HOH HOH . 
N 6 HOH A 28 628 634 HOH HOH . 
N 6 HOH A 29 629 622 HOH HOH . 
N 6 HOH A 30 630 628 HOH HOH . 
N 6 HOH A 31 631 635 HOH HOH . 
N 6 HOH A 32 632 630 HOH HOH . 
N 6 HOH A 33 633 640 HOH HOH . 
N 6 HOH A 34 634 637 HOH HOH . 
N 6 HOH A 35 635 631 HOH HOH . 
N 6 HOH A 36 636 639 HOH HOH . 
N 6 HOH A 37 637 642 HOH HOH . 
N 6 HOH A 38 638 632 HOH HOH . 
N 6 HOH A 39 639 638 HOH HOH . 
N 6 HOH A 40 640 641 HOH HOH . 
N 6 HOH A 41 641 627 HOH HOH . 
N 6 HOH A 42 642 645 HOH HOH . 
N 6 HOH A 43 643 629 HOH HOH . 
N 6 HOH A 44 644 643 HOH HOH . 
N 6 HOH A 45 645 644 HOH HOH . 
N 6 HOH A 46 646 646 HOH HOH . 
N 6 HOH A 47 647 647 HOH HOH . 
N 6 HOH A 48 648 648 HOH HOH . 
N 6 HOH A 49 649 650 HOH HOH . 
N 6 HOH A 50 650 649 HOH HOH . 
N 6 HOH A 51 651 651 HOH HOH . 
N 6 HOH A 52 652 652 HOH HOH . 
N 6 HOH A 53 653 653 HOH HOH . 
N 6 HOH A 54 654 654 HOH HOH . 
N 6 HOH A 55 655 655 HOH HOH . 
N 6 HOH A 56 656 656 HOH HOH . 
N 6 HOH A 57 657 657 HOH HOH . 
N 6 HOH A 58 658 658 HOH HOH . 
N 6 HOH A 59 659 659 HOH HOH . 
N 6 HOH A 60 660 660 HOH HOH . 
N 6 HOH A 61 661 661 HOH HOH . 
N 6 HOH A 62 662 662 HOH HOH . 
N 6 HOH A 63 663 663 HOH HOH . 
N 6 HOH A 64 664 664 HOH HOH . 
N 6 HOH A 65 665 665 HOH HOH . 
N 6 HOH A 66 666 666 HOH HOH . 
N 6 HOH A 67 667 667 HOH HOH . 
N 6 HOH A 68 668 668 HOH HOH . 
N 6 HOH A 69 669 669 HOH HOH . 
N 6 HOH A 70 670 670 HOH HOH . 
N 6 HOH A 71 671 671 HOH HOH . 
N 6 HOH A 72 672 672 HOH HOH . 
N 6 HOH A 73 673 673 HOH HOH . 
N 6 HOH A 74 674 674 HOH HOH . 
N 6 HOH A 75 675 675 HOH HOH . 
N 6 HOH A 76 676 676 HOH HOH . 
N 6 HOH A 77 677 677 HOH HOH . 
N 6 HOH A 78 678 678 HOH HOH . 
N 6 HOH A 79 679 679 HOH HOH . 
N 6 HOH A 80 680 680 HOH HOH . 
N 6 HOH A 81 681 681 HOH HOH . 
N 6 HOH A 82 682 682 HOH HOH . 
N 6 HOH A 83 683 683 HOH HOH . 
N 6 HOH A 84 684 684 HOH HOH . 
N 6 HOH A 85 685 685 HOH HOH . 
N 6 HOH A 86 686 686 HOH HOH . 
N 6 HOH A 87 687 687 HOH HOH . 
N 6 HOH A 88 688 688 HOH HOH . 
N 6 HOH A 89 689 689 HOH HOH . 
N 6 HOH A 90 690 690 HOH HOH . 
N 6 HOH A 91 691 691 HOH HOH . 
N 6 HOH A 92 692 692 HOH HOH . 
N 6 HOH A 93 693 693 HOH HOH . 
N 6 HOH A 94 694 694 HOH HOH . 
N 6 HOH A 95 695 695 HOH HOH . 
N 6 HOH A 96 696 696 HOH HOH . 
N 6 HOH A 97 697 697 HOH HOH . 
N 6 HOH A 98 698 698 HOH HOH . 
N 6 HOH A 99 699 699 HOH HOH . 
N 6 HOH A 100 700 700 HOH HOH . 
N 6 HOH A 101 701 701 HOH HOH . 
N 6 HOH A 102 702 702 HOH HOH . 
N 6 HOH A 103 703 703 HOH HOH . 
N 6 HOH A 104 704 704 HOH HOH . 
N 6 HOH A 105 705 705 HOH HOH . 
N 6 HOH A 106 706 706 HOH HOH . 
N 6 HOH A 107 707 707 HOH HOH . 
N 6 HOH A 108 708 708 HOH HOH . 
N 6 HOH A 109 709 709 HOH HOH . 
N 6 HOH A 110 710 710 HOH HOH . 
N 6 HOH A 111 711 711 HOH HOH . 
N 6 HOH A 112 712 712 HOH HOH . 
N 6 HOH A 113 713 713 HOH HOH . 
N 6 HOH A 114 714 714 HOH HOH . 
N 6 HOH A 115 715 715 HOH HOH . 
N 6 HOH A 116 716 716 HOH HOH . 
N 6 HOH A 117 717 717 HOH HOH . 
N 6 HOH A 118 718 718 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 5 16.554 43.639 11.266 1 69.74 ? C1 EDO 508 A 1 
HETATM 2 O O1 EDO . . . I 5 16.935 42.741 10.21 1 76.41 ? O1 EDO 508 A 1 
HETATM 3 C C2 EDO . . . I 5 15.484 44.642 10.803 1 45.75 ? C2 EDO 508 A 1 
HETATM 4 O O2 EDO . . . I 5 14.203 44.007 10.796 1 74.68 ? O2 EDO 508 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#