data_4TQF
#
_model_server_result.job_id            yDMXM3PTVCMGGkp-5_FQMw 
_model_server_result.datetime_utc      '2025-01-26 22:44:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4tqf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":510}' 
#
_entry.id    4TQF 
#
_exptl.entry_id    4TQF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4TQF 
_cell.length_a            105.11 
_cell.length_b            105.11 
_cell.length_c            70.29 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TQF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 52.555 91.02793 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 233 A GLU 396 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? 
metalc ? metalc2 A OG SER 236 A SER 399 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc3 B MG MG . A MG 501 1_555 D O2G ATP . A ATP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
metalc ? metalc4 B MG MG . A MG 501 1_555 D O2B ATP . A ATP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc5 B MG MG . A MG 501 1_555 M O HOH . A HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? 
metalc ? metalc6 B MG MG . A MG 501 1_555 M O HOH . A HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc7 B MG MG . A MG 501 1_555 M O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? 
metalc ? metalc8 B MG MG . A MG 501 1_555 M O HOH . A HOH 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc9 C MG MG . A MG 502 1_555 D O1A ATP . A ATP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc10 C MG MG . A MG 502 1_555 D O1B ATP . A ATP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc11 C MG MG . A MG 502 1_555 M O HOH . A HOH 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc12 C MG MG . A MG 502 1_555 M O HOH . A HOH 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 152 n n 
C1 C2 EDO sing 153 n n 
C1 H11 EDO sing 154 n n 
C1 H12 EDO sing 155 n n 
O1 HO1 EDO sing 156 n n 
C2 O2 EDO sing 157 n n 
C2 H21 EDO sing 158 n n 
C2 H22 EDO sing 159 n n 
O2 HO2 EDO sing 160 n n 
#
_atom_sites.entry_id                     4TQF 
_atom_sites.fract_transf_matrix[1][1]    0.009514 
_atom_sites.fract_transf_matrix[1][2]    0.005493 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010986 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014227 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 501 501 MG MG . 
C 2 MG A 1 502 502 MG MG . 
D 3 ATP A 1 503 503 ATP ATP . 
E 4 33W A 1 504 504 33W 33W . 
F 5 EDO A 1 505 505 EDO EDO . 
G 5 EDO A 1 506 506 EDO EDO . 
H 5 EDO A 1 507 507 EDO EDO . 
I 5 EDO A 1 508 508 EDO EDO . 
J 5 EDO A 1 509 509 EDO EDO . 
K 5 EDO A 1 510 510 EDO EDO . 
L 5 EDO A 1 511 511 EDO EDO . 
M 6 HOH A 1 601 601 HOH HOH . 
M 6 HOH A 2 602 602 HOH HOH . 
M 6 HOH A 3 603 604 HOH HOH . 
M 6 HOH A 4 604 603 HOH HOH . 
M 6 HOH A 5 605 605 HOH HOH . 
M 6 HOH A 6 606 607 HOH HOH . 
M 6 HOH A 7 607 606 HOH HOH . 
M 6 HOH A 8 608 610 HOH HOH . 
M 6 HOH A 9 609 608 HOH HOH . 
M 6 HOH A 10 610 609 HOH HOH . 
M 6 HOH A 11 611 611 HOH HOH . 
M 6 HOH A 12 612 612 HOH HOH . 
M 6 HOH A 13 613 613 HOH HOH . 
M 6 HOH A 14 614 615 HOH HOH . 
M 6 HOH A 15 615 616 HOH HOH . 
M 6 HOH A 16 616 614 HOH HOH . 
M 6 HOH A 17 617 617 HOH HOH . 
M 6 HOH A 18 618 618 HOH HOH . 
M 6 HOH A 19 619 619 HOH HOH . 
M 6 HOH A 20 620 620 HOH HOH . 
M 6 HOH A 21 621 622 HOH HOH . 
M 6 HOH A 22 622 621 HOH HOH . 
M 6 HOH A 23 623 624 HOH HOH . 
M 6 HOH A 24 624 623 HOH HOH . 
M 6 HOH A 25 625 625 HOH HOH . 
M 6 HOH A 26 626 626 HOH HOH . 
M 6 HOH A 27 627 627 HOH HOH . 
M 6 HOH A 28 628 628 HOH HOH . 
M 6 HOH A 29 629 629 HOH HOH . 
M 6 HOH A 30 630 630 HOH HOH . 
M 6 HOH A 31 631 631 HOH HOH . 
M 6 HOH A 32 632 632 HOH HOH . 
M 6 HOH A 33 633 633 HOH HOH . 
M 6 HOH A 34 634 634 HOH HOH . 
M 6 HOH A 35 635 635 HOH HOH . 
M 6 HOH A 36 636 636 HOH HOH . 
M 6 HOH A 37 637 637 HOH HOH . 
M 6 HOH A 38 638 638 HOH HOH . 
M 6 HOH A 39 639 639 HOH HOH . 
M 6 HOH A 40 640 640 HOH HOH . 
M 6 HOH A 41 641 641 HOH HOH . 
M 6 HOH A 42 642 642 HOH HOH . 
M 6 HOH A 43 643 643 HOH HOH . 
M 6 HOH A 44 644 644 HOH HOH . 
M 6 HOH A 45 645 645 HOH HOH . 
M 6 HOH A 46 646 646 HOH HOH . 
M 6 HOH A 47 647 647 HOH HOH . 
M 6 HOH A 48 648 648 HOH HOH . 
M 6 HOH A 49 649 649 HOH HOH . 
M 6 HOH A 50 650 650 HOH HOH . 
M 6 HOH A 51 651 651 HOH HOH . 
M 6 HOH A 52 652 652 HOH HOH . 
M 6 HOH A 53 653 653 HOH HOH . 
M 6 HOH A 54 654 654 HOH HOH . 
M 6 HOH A 55 655 655 HOH HOH . 
M 6 HOH A 56 656 656 HOH HOH . 
M 6 HOH A 57 657 657 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 5 -6.907 47.696 13.011 1 66.95 ? C1 EDO 510 A 1 
HETATM 2 O O1 EDO . . . K 5 -5.561 47.444 12.594 1 91.29 ? O1 EDO 510 A 1 
HETATM 3 C C2 EDO . . . K 5 -7.856 46.762 12.267 1 79.41 ? C2 EDO 510 A 1 
HETATM 4 O O2 EDO . . . K 5 -7.565 45.393 12.584 1 81.27 ? O2 EDO 510 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           101 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#