data_4TQG # _model_server_result.job_id yPfhRFiiye-yU76FEMv8Cg _model_server_result.datetime_utc '2024-12-21 15:02:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tqg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 4TQG # _exptl.entry_id 4TQG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4TQG _cell.length_a 153.509 _cell.length_b 153.509 _cell.length_c 60.68 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TQG _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 153.509 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 76.7545 132.942694 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 76.7545 132.942694 30.34 5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 153.509 0 30.34 6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 30.34 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 90 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 97 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 97 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.025 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 4TQG _atom_sites.fract_transf_matrix[1][1] 0.006514 _atom_sites.fract_transf_matrix[1][2] 0.003761 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01648 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 400 400 NDP NAP . C 3 HOH A 1 501 83 HOH HOH . C 3 HOH A 2 502 94 HOH HOH . C 3 HOH A 3 503 71 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 74 HOH HOH . C 3 HOH A 6 506 47 HOH HOH . C 3 HOH A 7 507 13 HOH HOH . C 3 HOH A 8 508 55 HOH HOH . C 3 HOH A 9 509 72 HOH HOH . C 3 HOH A 10 510 9 HOH HOH . C 3 HOH A 11 511 43 HOH HOH . C 3 HOH A 12 512 36 HOH HOH . C 3 HOH A 13 513 30 HOH HOH . C 3 HOH A 14 514 46 HOH HOH . C 3 HOH A 15 515 50 HOH HOH . C 3 HOH A 16 516 42 HOH HOH . C 3 HOH A 17 517 18 HOH HOH . C 3 HOH A 18 518 63 HOH HOH . C 3 HOH A 19 519 2 HOH HOH . C 3 HOH A 20 520 85 HOH HOH . C 3 HOH A 21 521 49 HOH HOH . C 3 HOH A 22 522 40 HOH HOH . C 3 HOH A 23 523 41 HOH HOH . C 3 HOH A 24 524 15 HOH HOH . C 3 HOH A 25 525 16 HOH HOH . C 3 HOH A 26 526 77 HOH HOH . C 3 HOH A 27 527 21 HOH HOH . C 3 HOH A 28 528 89 HOH HOH . C 3 HOH A 29 529 54 HOH HOH . C 3 HOH A 30 530 73 HOH HOH . C 3 HOH A 31 531 86 HOH HOH . C 3 HOH A 32 532 52 HOH HOH . C 3 HOH A 33 533 35 HOH HOH . C 3 HOH A 34 534 88 HOH HOH . C 3 HOH A 35 535 20 HOH HOH . C 3 HOH A 36 536 76 HOH HOH . C 3 HOH A 37 537 25 HOH HOH . C 3 HOH A 38 538 80 HOH HOH . C 3 HOH A 39 539 48 HOH HOH . C 3 HOH A 40 540 22 HOH HOH . C 3 HOH A 41 541 57 HOH HOH . C 3 HOH A 42 542 19 HOH HOH . C 3 HOH A 43 543 23 HOH HOH . C 3 HOH A 44 544 60 HOH HOH . C 3 HOH A 45 545 37 HOH HOH . C 3 HOH A 46 546 59 HOH HOH . C 3 HOH A 47 547 31 HOH HOH . C 3 HOH A 48 548 93 HOH HOH . C 3 HOH A 49 549 81 HOH HOH . C 3 HOH A 50 550 5 HOH HOH . C 3 HOH A 51 551 28 HOH HOH . C 3 HOH A 52 552 39 HOH HOH . C 3 HOH A 53 553 64 HOH HOH . C 3 HOH A 54 554 14 HOH HOH . C 3 HOH A 55 555 66 HOH HOH . C 3 HOH A 56 556 26 HOH HOH . C 3 HOH A 57 557 82 HOH HOH . C 3 HOH A 58 558 96 HOH HOH . C 3 HOH A 59 559 8 HOH HOH . C 3 HOH A 60 560 44 HOH HOH . C 3 HOH A 61 561 69 HOH HOH . C 3 HOH A 62 562 38 HOH HOH . C 3 HOH A 63 563 79 HOH HOH . C 3 HOH A 64 564 51 HOH HOH . C 3 HOH A 65 565 6 HOH HOH . C 3 HOH A 66 566 95 HOH HOH . C 3 HOH A 67 567 11 HOH HOH . C 3 HOH A 68 568 58 HOH HOH . C 3 HOH A 69 569 12 HOH HOH . C 3 HOH A 70 570 24 HOH HOH . C 3 HOH A 71 571 68 HOH HOH . C 3 HOH A 72 572 27 HOH HOH . C 3 HOH A 73 573 45 HOH HOH . C 3 HOH A 74 574 65 HOH HOH . C 3 HOH A 75 575 17 HOH HOH . C 3 HOH A 76 576 7 HOH HOH . C 3 HOH A 77 577 3 HOH HOH . C 3 HOH A 78 578 92 HOH HOH . C 3 HOH A 79 579 90 HOH HOH . C 3 HOH A 80 580 56 HOH HOH . C 3 HOH A 81 581 87 HOH HOH . C 3 HOH A 82 582 70 HOH HOH . C 3 HOH A 83 583 53 HOH HOH . C 3 HOH A 84 584 29 HOH HOH . C 3 HOH A 85 585 62 HOH HOH . C 3 HOH A 86 586 33 HOH HOH . C 3 HOH A 87 587 1 HOH HOH . C 3 HOH A 88 588 67 HOH HOH . C 3 HOH A 89 589 84 HOH HOH . C 3 HOH A 90 590 91 HOH HOH . C 3 HOH A 91 591 75 HOH HOH . C 3 HOH A 92 592 34 HOH HOH . C 3 HOH A 93 593 32 HOH HOH . C 3 HOH A 94 594 61 HOH HOH . C 3 HOH A 95 595 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 68.395 15.932 10.469 1 32.07 ? PA NDP 400 A 1 HETATM 2 O O1A NDP . . . B 2 68.261 16.126 11.925 1 34.94 ? O1A NDP 400 A 1 HETATM 3 O O2A NDP . . . B 2 68.726 14.53 10.137 1 34.53 ? O2A NDP 400 A 1 HETATM 4 O O5B NDP . . . B 2 69.495 17.008 9.977 1 35.51 ? O5B NDP 400 A 1 HETATM 5 C C5B NDP . . . B 2 69.143 18.339 9.658 1 27.34 ? C5B NDP 400 A 1 HETATM 6 C C4B NDP . . . B 2 70.338 19.07 9.049 1 25.73 ? C4B NDP 400 A 1 HETATM 7 O O4B NDP . . . B 2 70.353 20.43 9.452 1 19.97 ? O4B NDP 400 A 1 HETATM 8 C C3B NDP . . . B 2 71.675 18.473 9.463 1 26.14 ? C3B NDP 400 A 1 HETATM 9 O O3B NDP . . . B 2 72.44 18.318 8.284 1 19.4 ? O3B NDP 400 A 1 HETATM 10 C C2B NDP . . . B 2 72.345 19.532 10.314 1 22.7 ? C2B NDP 400 A 1 HETATM 11 O O2B NDP . . . B 2 73.723 19.53 10.047 1 21.76 ? O2B NDP 400 A 1 HETATM 12 C C1B NDP . . . B 2 71.678 20.796 9.786 1 17.77 ? C1B NDP 400 A 1 HETATM 13 N N9A NDP . . . B 2 71.72 21.95 10.712 1 19.37 ? N9A NDP 400 A 1 HETATM 14 C C8A NDP . . . B 2 71.109 22.078 11.936 1 19.98 ? C8A NDP 400 A 1 HETATM 15 N N7A NDP . . . B 2 71.411 23.299 12.428 1 17.85 ? N7A NDP 400 A 1 HETATM 16 C C5A NDP . . . B 2 72.186 23.96 11.541 1 17.01 ? C5A NDP 400 A 1 HETATM 17 C C6A NDP . . . B 2 72.768 25.222 11.551 1 15.45 ? C6A NDP 400 A 1 HETATM 18 N N6A NDP . . . B 2 72.592 26.057 12.582 1 10.81 ? N6A NDP 400 A 1 HETATM 19 N N1A NDP . . . B 2 73.531 25.612 10.464 1 15.81 ? N1A NDP 400 A 1 HETATM 20 C C2A NDP . . . B 2 73.723 24.773 9.387 1 15.31 ? C2A NDP 400 A 1 HETATM 21 N N3A NDP . . . B 2 73.139 23.52 9.388 1 17.31 ? N3A NDP 400 A 1 HETATM 22 C C4A NDP . . . B 2 72.392 23.121 10.454 1 20.6 ? C4A NDP 400 A 1 HETATM 23 O O3 NDP . . . B 2 67.037 16.386 9.768 1 31.27 ? O3 NDP 400 A 1 HETATM 24 P PN NDP . . . B 2 66.127 15.672 8.661 1 46.56 ? PN NDP 400 A 1 HETATM 25 O O1N NDP . . . B 2 65.43 14.521 9.275 1 36.94 ? O1N NDP 400 A 1 HETATM 26 O O2N NDP . . . B 2 66.986 15.487 7.462 1 27.66 ? O2N NDP 400 A 1 HETATM 27 O O5D NDP . . . B 2 65.045 16.845 8.419 1 42.1 ? O5D NDP 400 A 1 HETATM 28 C C5D NDP . . . B 2 65.398 18.049 7.767 1 30.59 ? C5D NDP 400 A 1 HETATM 29 C C4D NDP . . . B 2 64.144 18.862 7.439 1 31.07 ? C4D NDP 400 A 1 HETATM 30 O O4D NDP . . . B 2 63.015 18.006 7.338 1 34.5 ? O4D NDP 400 A 1 HETATM 31 C C3D NDP . . . B 2 63.821 19.873 8.533 1 33.93 ? C3D NDP 400 A 1 HETATM 32 O O3D NDP . . . B 2 63.562 21.133 7.962 1 30.56 ? O3D NDP 400 A 1 HETATM 33 C C2D NDP . . . B 2 62.534 19.378 9.153 1 35.1 ? C2D NDP 400 A 1 HETATM 34 O O2D NDP . . . B 2 61.719 20.472 9.507 1 33.74 ? O2D NDP 400 A 1 HETATM 35 C C1D NDP . . . B 2 61.906 18.558 8.036 1 33.15 ? C1D NDP 400 A 1 HETATM 36 N N1N NDP . . . B 2 61.015 17.529 8.611 1 33.25 ? N1N NDP 400 A 1 HETATM 37 C C2N NDP . . . B 2 61.515 16.32 9.016 1 32.6 ? C2N NDP 400 A 1 HETATM 38 C C3N NDP . . . B 2 60.668 15.361 9.571 1 35.94 ? C3N NDP 400 A 1 HETATM 39 C C7N NDP . . . B 2 61.204 14.049 10.066 1 37.23 ? C7N NDP 400 A 1 HETATM 40 O O7N NDP . . . B 2 62.6 13.845 10.171 1 42.43 ? O7N NDP 400 A 1 HETATM 41 N N7N NDP . . . B 2 60.323 13.11 10.412 1 40.28 ? N7N NDP 400 A 1 HETATM 42 C C4N NDP . . . B 2 59.312 15.63 9.704 1 28.44 ? C4N NDP 400 A 1 HETATM 43 C C5N NDP . . . B 2 58.814 16.861 9.29 1 32.34 ? C5N NDP 400 A 1 HETATM 44 C C6N NDP . . . B 2 59.679 17.803 8.741 1 32.69 ? C6N NDP 400 A 1 HETATM 45 P P2B NDP . . . B 2 74.8 19.911 11.182 1 23.13 ? P2B NDP 400 A 1 HETATM 46 O O1X NDP . . . B 2 74.332 19.502 12.556 1 28.6 ? O1X NDP 400 A 1 HETATM 47 O O2X NDP . . . B 2 74.993 21.417 11.201 1 20.56 ? O2X NDP 400 A 1 HETATM 48 O O3X NDP . . . B 2 76.081 19.21 10.836 1 22.88 ? O3X NDP 400 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 31 _model_server_stats.element_count 48 #