data_4TRN # _model_server_result.job_id 3m-ZTwIrv0n3ZYcUN5Caow _model_server_result.datetime_utc '2024-11-07 19:10:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4trn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4TRN # _exptl.entry_id 4TRN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4TRN _cell.length_a 98.11 _cell.length_b 98.11 _cell.length_c 139.16 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TRN _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 49.055 -84.965752 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.386667 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 49.055 -84.965752 46.386667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 267 n n PA O2A NAD sing 268 n n PA O5B NAD sing 269 n n PA O3 NAD sing 270 n n O2A HOA2 NAD sing 271 n n O5B C5B NAD sing 272 n n C5B C4B NAD sing 273 n n C5B H51A NAD sing 274 n n C5B H52A NAD sing 275 n n C4B O4B NAD sing 276 n n C4B C3B NAD sing 277 n n C4B H4B NAD sing 278 n n O4B C1B NAD sing 279 n n C3B O3B NAD sing 280 n n C3B C2B NAD sing 281 n n C3B H3B NAD sing 282 n n O3B HO3A NAD sing 283 n n C2B O2B NAD sing 284 n n C2B C1B NAD sing 285 n n C2B H2B NAD sing 286 n n O2B HO2A NAD sing 287 n n C1B N9A NAD sing 288 n n C1B H1B NAD sing 289 n n N9A C8A NAD sing 290 n y N9A C4A NAD sing 291 n y C8A N7A NAD doub 292 n y C8A H8A NAD sing 293 n n N7A C5A NAD sing 294 n y C5A C6A NAD sing 295 n y C5A C4A NAD doub 296 n y C6A N6A NAD sing 297 n n C6A N1A NAD doub 298 n y N6A H61A NAD sing 299 n n N6A H62A NAD sing 300 n n N1A C2A NAD sing 301 n y C2A N3A NAD doub 302 n y C2A H2A NAD sing 303 n n N3A C4A NAD sing 304 n y O3 PN NAD sing 305 n n PN O1N NAD doub 306 n n PN O2N NAD sing 307 n n PN O5D NAD sing 308 n n O5D C5D NAD sing 309 n n C5D C4D NAD sing 310 n n C5D H51N NAD sing 311 n n C5D H52N NAD sing 312 n n C4D O4D NAD sing 313 n n C4D C3D NAD sing 314 n n C4D H4D NAD sing 315 n n O4D C1D NAD sing 316 n n C3D O3D NAD sing 317 n n C3D C2D NAD sing 318 n n C3D H3D NAD sing 319 n n O3D HO3N NAD sing 320 n n C2D O2D NAD sing 321 n n C2D C1D NAD sing 322 n n C2D H2D NAD sing 323 n n O2D HO2N NAD sing 324 n n C1D N1N NAD sing 325 n n C1D H1D NAD sing 326 n n N1N C2N NAD sing 327 n y N1N C6N NAD doub 328 n y C2N C3N NAD doub 329 n y C2N H2N NAD sing 330 n n C3N C7N NAD sing 331 n n C3N C4N NAD sing 332 n y C7N O7N NAD doub 333 n n C7N N7N NAD sing 334 n n N7N H71N NAD sing 335 n n N7N H72N NAD sing 336 n n C4N C5N NAD doub 337 n y C4N H4N NAD sing 338 n n C5N C6N NAD sing 339 n y C5N H5N NAD sing 340 n n C6N H6N NAD sing 341 n n # _atom_sites.entry_id 4TRN _atom_sites.fract_transf_matrix[1][1] 0.010193 _atom_sites.fract_transf_matrix[1][2] 0.005885 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 1 NAD NAD . C 3 MPD A 1 302 1 MPD MPD . D 4 DMS A 1 303 1 DMS DMS . E 4 DMS A 1 304 2 DMS DMS . F 5 HOH A 1 401 224 HOH HOH . F 5 HOH A 2 402 234 HOH HOH . F 5 HOH A 3 403 23 HOH HOH . F 5 HOH A 4 404 227 HOH HOH . F 5 HOH A 5 405 20 HOH HOH . F 5 HOH A 6 406 13 HOH HOH . F 5 HOH A 7 407 30 HOH HOH . F 5 HOH A 8 408 24 HOH HOH . F 5 HOH A 9 409 233 HOH HOH . F 5 HOH A 10 410 19 HOH HOH . F 5 HOH A 11 411 209 HOH HOH . F 5 HOH A 12 412 77 HOH HOH . F 5 HOH A 13 413 228 HOH HOH . F 5 HOH A 14 414 15 HOH HOH . F 5 HOH A 15 415 150 HOH HOH . F 5 HOH A 16 416 11 HOH HOH . F 5 HOH A 17 417 58 HOH HOH . F 5 HOH A 18 418 8 HOH HOH . F 5 HOH A 19 419 86 HOH HOH . F 5 HOH A 20 420 40 HOH HOH . F 5 HOH A 21 421 180 HOH HOH . F 5 HOH A 22 422 22 HOH HOH . F 5 HOH A 23 423 75 HOH HOH . F 5 HOH A 24 424 37 HOH HOH . F 5 HOH A 25 425 5 HOH HOH . F 5 HOH A 26 426 7 HOH HOH . F 5 HOH A 27 427 138 HOH HOH . F 5 HOH A 28 428 41 HOH HOH . F 5 HOH A 29 429 6 HOH HOH . F 5 HOH A 30 430 59 HOH HOH . F 5 HOH A 31 431 79 HOH HOH . F 5 HOH A 32 432 56 HOH HOH . F 5 HOH A 33 433 60 HOH HOH . F 5 HOH A 34 434 65 HOH HOH . F 5 HOH A 35 435 33 HOH HOH . F 5 HOH A 36 436 36 HOH HOH . F 5 HOH A 37 437 107 HOH HOH . F 5 HOH A 38 438 87 HOH HOH . F 5 HOH A 39 439 46 HOH HOH . F 5 HOH A 40 440 71 HOH HOH . F 5 HOH A 41 441 102 HOH HOH . F 5 HOH A 42 442 152 HOH HOH . F 5 HOH A 43 443 76 HOH HOH . F 5 HOH A 44 444 88 HOH HOH . F 5 HOH A 45 445 136 HOH HOH . F 5 HOH A 46 446 2 HOH HOH . F 5 HOH A 47 447 3 HOH HOH . F 5 HOH A 48 448 4 HOH HOH . F 5 HOH A 49 449 10 HOH HOH . F 5 HOH A 50 450 12 HOH HOH . F 5 HOH A 51 451 14 HOH HOH . F 5 HOH A 52 452 16 HOH HOH . F 5 HOH A 53 453 18 HOH HOH . F 5 HOH A 54 454 21 HOH HOH . F 5 HOH A 55 455 25 HOH HOH . F 5 HOH A 56 456 26 HOH HOH . F 5 HOH A 57 457 28 HOH HOH . F 5 HOH A 58 458 29 HOH HOH . F 5 HOH A 59 459 31 HOH HOH . F 5 HOH A 60 460 32 HOH HOH . F 5 HOH A 61 461 34 HOH HOH . F 5 HOH A 62 462 35 HOH HOH . F 5 HOH A 63 463 38 HOH HOH . F 5 HOH A 64 464 39 HOH HOH . F 5 HOH A 65 465 42 HOH HOH . F 5 HOH A 66 466 45 HOH HOH . F 5 HOH A 67 467 47 HOH HOH . F 5 HOH A 68 468 48 HOH HOH . F 5 HOH A 69 469 49 HOH HOH . F 5 HOH A 70 470 50 HOH HOH . F 5 HOH A 71 471 51 HOH HOH . F 5 HOH A 72 472 52 HOH HOH . F 5 HOH A 73 473 54 HOH HOH . F 5 HOH A 74 474 55 HOH HOH . F 5 HOH A 75 475 57 HOH HOH . F 5 HOH A 76 476 61 HOH HOH . F 5 HOH A 77 477 62 HOH HOH . F 5 HOH A 78 478 63 HOH HOH . F 5 HOH A 79 479 64 HOH HOH . F 5 HOH A 80 480 66 HOH HOH . F 5 HOH A 81 481 67 HOH HOH . F 5 HOH A 82 482 70 HOH HOH . F 5 HOH A 83 483 72 HOH HOH . F 5 HOH A 84 484 73 HOH HOH . F 5 HOH A 85 485 78 HOH HOH . F 5 HOH A 86 486 80 HOH HOH . F 5 HOH A 87 487 81 HOH HOH . F 5 HOH A 88 488 84 HOH HOH . F 5 HOH A 89 489 85 HOH HOH . F 5 HOH A 90 490 89 HOH HOH . F 5 HOH A 91 491 90 HOH HOH . F 5 HOH A 92 492 92 HOH HOH . F 5 HOH A 93 493 94 HOH HOH . F 5 HOH A 94 494 97 HOH HOH . F 5 HOH A 95 495 99 HOH HOH . F 5 HOH A 96 496 100 HOH HOH . F 5 HOH A 97 497 105 HOH HOH . F 5 HOH A 98 498 109 HOH HOH . F 5 HOH A 99 499 112 HOH HOH . F 5 HOH A 100 500 113 HOH HOH . F 5 HOH A 101 501 116 HOH HOH . F 5 HOH A 102 502 117 HOH HOH . F 5 HOH A 103 503 119 HOH HOH . F 5 HOH A 104 504 121 HOH HOH . F 5 HOH A 105 505 122 HOH HOH . F 5 HOH A 106 506 123 HOH HOH . F 5 HOH A 107 507 124 HOH HOH . F 5 HOH A 108 508 125 HOH HOH . F 5 HOH A 109 509 126 HOH HOH . F 5 HOH A 110 510 127 HOH HOH . F 5 HOH A 111 511 128 HOH HOH . F 5 HOH A 112 512 129 HOH HOH . F 5 HOH A 113 513 130 HOH HOH . F 5 HOH A 114 514 131 HOH HOH . F 5 HOH A 115 515 132 HOH HOH . F 5 HOH A 116 516 133 HOH HOH . F 5 HOH A 117 517 134 HOH HOH . F 5 HOH A 118 518 137 HOH HOH . F 5 HOH A 119 519 139 HOH HOH . F 5 HOH A 120 520 142 HOH HOH . F 5 HOH A 121 521 145 HOH HOH . F 5 HOH A 122 522 154 HOH HOH . F 5 HOH A 123 523 155 HOH HOH . F 5 HOH A 124 524 168 HOH HOH . F 5 HOH A 125 525 178 HOH HOH . F 5 HOH A 126 526 179 HOH HOH . F 5 HOH A 127 527 189 HOH HOH . F 5 HOH A 128 528 191 HOH HOH . F 5 HOH A 129 529 225 HOH HOH . F 5 HOH A 130 530 226 HOH HOH . F 5 HOH A 131 531 231 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 0.745 -33.588 11.045 1 49.75 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . B 2 0.856 -32.276 10.369 1 46 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . B 2 -0.225 -34.576 10.437 1 45.79 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . B 2 0.468 -33.435 12.604 1 48.51 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . B 2 0.994 -32.363 13.419 1 47.59 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . B 2 -0.14 -31.889 14.293 1 47.03 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . B 2 0.306 -30.836 15.178 1 48.13 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . B 2 -1.355 -31.335 13.532 1 46.12 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . B 2 -2.527 -32.058 13.88 1 46.43 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . B 2 -1.46 -29.886 14.012 1 48.11 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . B 2 -2.816 -29.473 14.119 1 51.85 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . B 2 -0.808 -29.999 15.383 1 46.11 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . B 2 -0.396 -28.738 15.988 1 41.65 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . B 2 0.386 -27.749 15.45 1 42.16 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . B 2 0.413 -26.645 16.157 1 42.67 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . B 2 -0.404 -26.93 17.243 1 41.98 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . B 2 -0.805 -26.167 18.358 1 43.21 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . B 2 -0.446 -24.897 18.564 1 45.09 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . B 2 -1.615 -26.756 19.26 1 45.93 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . B 2 -1.997 -28.021 19.059 1 47.32 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . B 2 -1.7 -28.832 18.04 1 47.52 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . B 2 -0.894 -28.22 17.159 1 42.59 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . B 2 2.143 -34.372 10.963 1 48.55 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . B 2 2.743 -35.676 11.679 1 45.64 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . B 2 1.733 -36.745 11.835 1 44.52 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . B 2 3.999 -36.016 10.969 1 50.22 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . B 2 3.135 -35.034 13.087 1 43.77 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . B 2 2.893 -35.699 14.349 1 42.88 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . B 2 4.152 -35.759 15.192 1 40.33 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . B 2 5.059 -36.758 14.661 1 41.28 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . B 2 4.983 -34.481 15.28 1 37.98 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . B 2 5.5 -34.374 16.607 1 40.94 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . B 2 6.09 -34.754 14.253 1 39.84 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . B 2 7.268 -33.996 14.497 1 39.8 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . B 2 6.36 -36.243 14.575 1 41.12 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . B 2 7.179 -37.04 13.56 1 42.2 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . B 2 6.874 -36.925 12.167 1 41.02 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . B 2 7.615 -37.648 11.247 1 42.94 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . B 2 7.301 -37.641 9.774 1 43.37 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . B 2 8.138 -38.049 8.985 1 44.02 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . B 2 6.145 -37.086 9.374 1 40.6 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . B 2 8.629 -38.491 11.709 1 41.49 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . B 2 8.882 -38.614 13.071 1 42.74 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . B 2 8.149 -37.871 13.981 1 40.99 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 44 #