data_4TRN
#
_model_server_result.job_id            q3s2S4s_2CpEdWUhyi6m1g 
_model_server_result.datetime_utc      '2024-11-07 19:00:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4trn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4TRN 
#
_exptl.entry_id    4TRN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4TRN 
_cell.length_a            98.11 
_cell.length_b            98.11 
_cell.length_c            139.16 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TRN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    Tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 49.055 -84.965752 0 
3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.386667 
4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 49.055 -84.965752 46.386667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 246 n n 
C1 H11 MPD sing 247 n n 
C1 H12 MPD sing 248 n n 
C1 H13 MPD sing 249 n n 
C2 O2 MPD sing 250 n n 
C2 CM MPD sing 251 n n 
C2 C3 MPD sing 252 n n 
O2 HO2 MPD sing 253 n n 
CM HM1 MPD sing 254 n n 
CM HM2 MPD sing 255 n n 
CM HM3 MPD sing 256 n n 
C3 C4 MPD sing 257 n n 
C3 H31 MPD sing 258 n n 
C3 H32 MPD sing 259 n n 
C4 O4 MPD sing 260 n n 
C4 C5 MPD sing 261 n n 
C4 H4 MPD sing 262 n n 
O4 HO4 MPD sing 263 n n 
C5 H51 MPD sing 264 n n 
C5 H52 MPD sing 265 n n 
C5 H53 MPD sing 266 n n 
#
_atom_sites.entry_id                     4TRN 
_atom_sites.fract_transf_matrix[1][1]    0.010193 
_atom_sites.fract_transf_matrix[1][2]    0.005885 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011769 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007186 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAD A 1 301 1 NAD NAD . 
C 3 MPD A 1 302 1 MPD MPD . 
D 4 DMS A 1 303 1 DMS DMS . 
E 4 DMS A 1 304 2 DMS DMS . 
F 5 HOH A 1 401 224 HOH HOH . 
F 5 HOH A 2 402 234 HOH HOH . 
F 5 HOH A 3 403 23 HOH HOH . 
F 5 HOH A 4 404 227 HOH HOH . 
F 5 HOH A 5 405 20 HOH HOH . 
F 5 HOH A 6 406 13 HOH HOH . 
F 5 HOH A 7 407 30 HOH HOH . 
F 5 HOH A 8 408 24 HOH HOH . 
F 5 HOH A 9 409 233 HOH HOH . 
F 5 HOH A 10 410 19 HOH HOH . 
F 5 HOH A 11 411 209 HOH HOH . 
F 5 HOH A 12 412 77 HOH HOH . 
F 5 HOH A 13 413 228 HOH HOH . 
F 5 HOH A 14 414 15 HOH HOH . 
F 5 HOH A 15 415 150 HOH HOH . 
F 5 HOH A 16 416 11 HOH HOH . 
F 5 HOH A 17 417 58 HOH HOH . 
F 5 HOH A 18 418 8 HOH HOH . 
F 5 HOH A 19 419 86 HOH HOH . 
F 5 HOH A 20 420 40 HOH HOH . 
F 5 HOH A 21 421 180 HOH HOH . 
F 5 HOH A 22 422 22 HOH HOH . 
F 5 HOH A 23 423 75 HOH HOH . 
F 5 HOH A 24 424 37 HOH HOH . 
F 5 HOH A 25 425 5 HOH HOH . 
F 5 HOH A 26 426 7 HOH HOH . 
F 5 HOH A 27 427 138 HOH HOH . 
F 5 HOH A 28 428 41 HOH HOH . 
F 5 HOH A 29 429 6 HOH HOH . 
F 5 HOH A 30 430 59 HOH HOH . 
F 5 HOH A 31 431 79 HOH HOH . 
F 5 HOH A 32 432 56 HOH HOH . 
F 5 HOH A 33 433 60 HOH HOH . 
F 5 HOH A 34 434 65 HOH HOH . 
F 5 HOH A 35 435 33 HOH HOH . 
F 5 HOH A 36 436 36 HOH HOH . 
F 5 HOH A 37 437 107 HOH HOH . 
F 5 HOH A 38 438 87 HOH HOH . 
F 5 HOH A 39 439 46 HOH HOH . 
F 5 HOH A 40 440 71 HOH HOH . 
F 5 HOH A 41 441 102 HOH HOH . 
F 5 HOH A 42 442 152 HOH HOH . 
F 5 HOH A 43 443 76 HOH HOH . 
F 5 HOH A 44 444 88 HOH HOH . 
F 5 HOH A 45 445 136 HOH HOH . 
F 5 HOH A 46 446 2 HOH HOH . 
F 5 HOH A 47 447 3 HOH HOH . 
F 5 HOH A 48 448 4 HOH HOH . 
F 5 HOH A 49 449 10 HOH HOH . 
F 5 HOH A 50 450 12 HOH HOH . 
F 5 HOH A 51 451 14 HOH HOH . 
F 5 HOH A 52 452 16 HOH HOH . 
F 5 HOH A 53 453 18 HOH HOH . 
F 5 HOH A 54 454 21 HOH HOH . 
F 5 HOH A 55 455 25 HOH HOH . 
F 5 HOH A 56 456 26 HOH HOH . 
F 5 HOH A 57 457 28 HOH HOH . 
F 5 HOH A 58 458 29 HOH HOH . 
F 5 HOH A 59 459 31 HOH HOH . 
F 5 HOH A 60 460 32 HOH HOH . 
F 5 HOH A 61 461 34 HOH HOH . 
F 5 HOH A 62 462 35 HOH HOH . 
F 5 HOH A 63 463 38 HOH HOH . 
F 5 HOH A 64 464 39 HOH HOH . 
F 5 HOH A 65 465 42 HOH HOH . 
F 5 HOH A 66 466 45 HOH HOH . 
F 5 HOH A 67 467 47 HOH HOH . 
F 5 HOH A 68 468 48 HOH HOH . 
F 5 HOH A 69 469 49 HOH HOH . 
F 5 HOH A 70 470 50 HOH HOH . 
F 5 HOH A 71 471 51 HOH HOH . 
F 5 HOH A 72 472 52 HOH HOH . 
F 5 HOH A 73 473 54 HOH HOH . 
F 5 HOH A 74 474 55 HOH HOH . 
F 5 HOH A 75 475 57 HOH HOH . 
F 5 HOH A 76 476 61 HOH HOH . 
F 5 HOH A 77 477 62 HOH HOH . 
F 5 HOH A 78 478 63 HOH HOH . 
F 5 HOH A 79 479 64 HOH HOH . 
F 5 HOH A 80 480 66 HOH HOH . 
F 5 HOH A 81 481 67 HOH HOH . 
F 5 HOH A 82 482 70 HOH HOH . 
F 5 HOH A 83 483 72 HOH HOH . 
F 5 HOH A 84 484 73 HOH HOH . 
F 5 HOH A 85 485 78 HOH HOH . 
F 5 HOH A 86 486 80 HOH HOH . 
F 5 HOH A 87 487 81 HOH HOH . 
F 5 HOH A 88 488 84 HOH HOH . 
F 5 HOH A 89 489 85 HOH HOH . 
F 5 HOH A 90 490 89 HOH HOH . 
F 5 HOH A 91 491 90 HOH HOH . 
F 5 HOH A 92 492 92 HOH HOH . 
F 5 HOH A 93 493 94 HOH HOH . 
F 5 HOH A 94 494 97 HOH HOH . 
F 5 HOH A 95 495 99 HOH HOH . 
F 5 HOH A 96 496 100 HOH HOH . 
F 5 HOH A 97 497 105 HOH HOH . 
F 5 HOH A 98 498 109 HOH HOH . 
F 5 HOH A 99 499 112 HOH HOH . 
F 5 HOH A 100 500 113 HOH HOH . 
F 5 HOH A 101 501 116 HOH HOH . 
F 5 HOH A 102 502 117 HOH HOH . 
F 5 HOH A 103 503 119 HOH HOH . 
F 5 HOH A 104 504 121 HOH HOH . 
F 5 HOH A 105 505 122 HOH HOH . 
F 5 HOH A 106 506 123 HOH HOH . 
F 5 HOH A 107 507 124 HOH HOH . 
F 5 HOH A 108 508 125 HOH HOH . 
F 5 HOH A 109 509 126 HOH HOH . 
F 5 HOH A 110 510 127 HOH HOH . 
F 5 HOH A 111 511 128 HOH HOH . 
F 5 HOH A 112 512 129 HOH HOH . 
F 5 HOH A 113 513 130 HOH HOH . 
F 5 HOH A 114 514 131 HOH HOH . 
F 5 HOH A 115 515 132 HOH HOH . 
F 5 HOH A 116 516 133 HOH HOH . 
F 5 HOH A 117 517 134 HOH HOH . 
F 5 HOH A 118 518 137 HOH HOH . 
F 5 HOH A 119 519 139 HOH HOH . 
F 5 HOH A 120 520 142 HOH HOH . 
F 5 HOH A 121 521 145 HOH HOH . 
F 5 HOH A 122 522 154 HOH HOH . 
F 5 HOH A 123 523 155 HOH HOH . 
F 5 HOH A 124 524 168 HOH HOH . 
F 5 HOH A 125 525 178 HOH HOH . 
F 5 HOH A 126 526 179 HOH HOH . 
F 5 HOH A 127 527 189 HOH HOH . 
F 5 HOH A 128 528 191 HOH HOH . 
F 5 HOH A 129 529 225 HOH HOH . 
F 5 HOH A 130 530 226 HOH HOH . 
F 5 HOH A 131 531 231 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 7.738 -33.774 7.773 1 57.31 ? C1 MPD 302 A 1 
HETATM 2 C C2 MPD . . . C 3 8.103 -33.034 9.063 1 56.9 ? C2 MPD 302 A 1 
HETATM 3 O O2 MPD . . . C 3 9.045 -32 8.707 1 61.12 ? O2 MPD 302 A 1 
HETATM 4 C CM MPD . . . C 3 6.872 -32.387 9.675 1 54.13 ? CM MPD 302 A 1 
HETATM 5 C C3 MPD . . . C 3 8.702 -34.067 10.067 1 54.97 ? C3 MPD 302 A 1 
HETATM 6 C C4 MPD . . . C 3 9.23 -33.471 11.401 1 52.92 ? C4 MPD 302 A 1 
HETATM 7 O O4 MPD . . . C 3 8.15 -32.986 12.209 1 51.99 ? O4 MPD 302 A 1 
HETATM 8 C C5 MPD . . . C 3 10.012 -34.499 12.183 1 51.39 ? C5 MPD 302 A 1 
HETATM 9 H H11 MPD . . . C 3 8.603 -33.937 7.133 1 56.96 ? H11 MPD 302 A 1 
HETATM 10 H H12 MPD . . . C 3 7.005 -33.238 7.173 1 57.28 ? H12 MPD 302 A 1 
HETATM 11 H H13 MPD . . . C 3 7.325 -34.76 7.983 1 57.31 ? H13 MPD 302 A 1 
HETATM 12 H HO2 MPD . . . C 3 9.148 -31.363 9.462 1 61.22 ? HO2 MPD 302 A 1 
HETATM 13 H HM1 MPD . . . C 3 6.34 -33.077 10.326 1 53.77 ? HM1 MPD 302 A 1 
HETATM 14 H HM2 MPD . . . C 3 6.156 -32.053 8.926 1 54.44 ? HM2 MPD 302 A 1 
HETATM 15 H HM3 MPD . . . C 3 7.108 -31.5 10.261 1 54.01 ? HM3 MPD 302 A 1 
HETATM 16 H H31 MPD . . . C 3 7.968 -34.842 10.284 1 55.51 ? H31 MPD 302 A 1 
HETATM 17 H H32 MPD . . . C 3 9.5 -34.608 9.561 1 54.78 ? H32 MPD 302 A 1 
HETATM 18 H H4 MPD . . . C 3 9.833 -32.579 11.241 1 53.06 ? H4 MPD 302 A 1 
HETATM 19 H HO4 MPD . . . C 3 8.182 -31.994 12.222 1 51.92 ? HO4 MPD 302 A 1 
HETATM 20 H H51 MPD . . . C 3 10.819 -34.925 11.588 1 51.6 ? H51 MPD 302 A 1 
HETATM 21 H H52 MPD . . . C 3 9.388 -35.335 12.495 1 51.44 ? H52 MPD 302 A 1 
HETATM 22 H H53 MPD . . . C 3 10.474 -34.096 13.083 1 51.16 ? H53 MPD 302 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#