data_4TS7 # _model_server_result.job_id fBkX1ybipF43q6bpZPCYCA _model_server_result.datetime_utc '2024-12-26 23:32:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ts7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4TS7 # _exptl.entry_id 4TS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4TS7 _cell.length_a 135.716 _cell.length_b 135.716 _cell.length_c 54.151 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4TS7 _atom_sites.fract_transf_matrix[1][1] 0.007368 _atom_sites.fract_transf_matrix[1][2] 0.004254 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 301 ADP ADP . D 3 PO4 A 1 302 302 PO4 PO4 . E 2 ADP B 1 301 301 ADP ADP . F 3 PO4 B 1 302 302 PO4 PO4 . G 3 PO4 B 1 303 303 PO4 PO4 . H 4 HOH A 1 401 446 HOH HOH . H 4 HOH A 2 402 458 HOH HOH . H 4 HOH A 3 403 453 HOH HOH . H 4 HOH A 4 404 460 HOH HOH . H 4 HOH A 5 405 436 HOH HOH . H 4 HOH A 6 406 432 HOH HOH . H 4 HOH A 7 407 463 HOH HOH . H 4 HOH A 8 408 475 HOH HOH . H 4 HOH A 9 409 473 HOH HOH . H 4 HOH A 10 410 404 HOH HOH . H 4 HOH A 11 411 408 HOH HOH . H 4 HOH A 12 412 410 HOH HOH . H 4 HOH A 13 413 411 HOH HOH . H 4 HOH A 14 414 412 HOH HOH . H 4 HOH A 15 415 417 HOH HOH . H 4 HOH A 16 416 418 HOH HOH . H 4 HOH A 17 417 421 HOH HOH . H 4 HOH A 18 418 424 HOH HOH . H 4 HOH A 19 419 425 HOH HOH . H 4 HOH A 20 420 426 HOH HOH . H 4 HOH A 21 421 430 HOH HOH . H 4 HOH A 22 422 431 HOH HOH . H 4 HOH A 23 423 433 HOH HOH . H 4 HOH A 24 424 434 HOH HOH . H 4 HOH A 25 425 435 HOH HOH . H 4 HOH A 26 426 440 HOH HOH . H 4 HOH A 27 427 441 HOH HOH . H 4 HOH A 28 428 443 HOH HOH . H 4 HOH A 29 429 444 HOH HOH . H 4 HOH A 30 430 445 HOH HOH . H 4 HOH A 31 431 448 HOH HOH . H 4 HOH A 32 432 451 HOH HOH . H 4 HOH A 33 433 456 HOH HOH . H 4 HOH A 34 434 461 HOH HOH . H 4 HOH A 35 435 462 HOH HOH . H 4 HOH A 36 436 466 HOH HOH . H 4 HOH A 37 437 467 HOH HOH . H 4 HOH A 38 438 470 HOH HOH . H 4 HOH A 39 439 471 HOH HOH . H 4 HOH A 40 440 472 HOH HOH . H 4 HOH A 41 441 474 HOH HOH . H 4 HOH A 42 442 476 HOH HOH . H 4 HOH A 43 443 478 HOH HOH . H 4 HOH A 44 444 481 HOH HOH . H 4 HOH A 45 445 482 HOH HOH . H 4 HOH A 46 446 483 HOH HOH . H 4 HOH A 47 447 484 HOH HOH . H 4 HOH A 48 448 485 HOH HOH . I 4 HOH B 1 401 420 HOH HOH . I 4 HOH B 2 402 427 HOH HOH . I 4 HOH B 3 403 455 HOH HOH . I 4 HOH B 4 404 442 HOH HOH . I 4 HOH B 5 405 449 HOH HOH . I 4 HOH B 6 406 428 HOH HOH . I 4 HOH B 7 407 401 HOH HOH . I 4 HOH B 8 408 402 HOH HOH . I 4 HOH B 9 409 403 HOH HOH . I 4 HOH B 10 410 405 HOH HOH . I 4 HOH B 11 411 406 HOH HOH . I 4 HOH B 12 412 407 HOH HOH . I 4 HOH B 13 413 409 HOH HOH . I 4 HOH B 14 414 413 HOH HOH . I 4 HOH B 15 415 414 HOH HOH . I 4 HOH B 16 416 415 HOH HOH . I 4 HOH B 17 417 416 HOH HOH . I 4 HOH B 18 418 419 HOH HOH . I 4 HOH B 19 419 422 HOH HOH . I 4 HOH B 20 420 423 HOH HOH . I 4 HOH B 21 421 429 HOH HOH . I 4 HOH B 22 422 437 HOH HOH . I 4 HOH B 23 423 438 HOH HOH . I 4 HOH B 24 424 439 HOH HOH . I 4 HOH B 25 425 447 HOH HOH . I 4 HOH B 26 426 450 HOH HOH . I 4 HOH B 27 427 452 HOH HOH . I 4 HOH B 28 428 454 HOH HOH . I 4 HOH B 29 429 457 HOH HOH . I 4 HOH B 30 430 459 HOH HOH . I 4 HOH B 31 431 464 HOH HOH . I 4 HOH B 32 432 465 HOH HOH . I 4 HOH B 33 433 468 HOH HOH . I 4 HOH B 34 434 469 HOH HOH . I 4 HOH B 35 435 477 HOH HOH . I 4 HOH B 36 436 479 HOH HOH . I 4 HOH B 37 437 480 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 2 46.724 -5.835 -9.379 1 27.51 ? PB ADP 301 B 1 HETATM 2 O O1B ADP . . . E 2 47.518 -6.463 -10.506 1 21.75 ? O1B ADP 301 B 1 HETATM 3 O O2B ADP . . . E 2 47.245 -4.501 -8.926 1 26.28 ? O2B ADP 301 B 1 HETATM 4 O O3B ADP . . . E 2 45.215 -5.876 -9.513 1 24.27 ? O3B ADP 301 B 1 HETATM 5 P PA ADP . . . E 2 47.098 -8.31 -7.98 1 25.55 ? PA ADP 301 B 1 HETATM 6 O O1A ADP . . . E 2 47.855 -8.933 -9.142 1 17.74 ? O1A ADP 301 B 1 HETATM 7 O O2A ADP . . . E 2 45.735 -8.831 -7.589 1 25.46 ? O2A ADP 301 B 1 HETATM 8 O O3A ADP . . . E 2 47.012 -6.716 -8.071 1 22.94 ? O3A ADP 301 B 1 HETATM 9 O O5' ADP . . . E 2 48.031 -8.352 -6.67 1 19.18 ? O5' ADP 301 B 1 HETATM 10 C C5' ADP . . . E 2 47.428 -7.974 -5.438 1 19.29 ? C5' ADP 301 B 1 HETATM 11 C C4' ADP . . . E 2 48.47 -7.452 -4.462 1 24.26 ? C4' ADP 301 B 1 HETATM 12 O O4' ADP . . . E 2 49.497 -8.429 -4.293 1 20.87 ? O4' ADP 301 B 1 HETATM 13 C C3' ADP . . . E 2 49.164 -6.171 -4.914 1 22.94 ? C3' ADP 301 B 1 HETATM 14 O O3' ADP . . . E 2 48.462 -5.012 -4.455 1 24.39 ? O3' ADP 301 B 1 HETATM 15 C C2' ADP . . . E 2 50.548 -6.297 -4.305 1 19.06 ? C2' ADP 301 B 1 HETATM 16 O O2' ADP . . . E 2 50.592 -5.776 -2.972 1 18.56 ? O2' ADP 301 B 1 HETATM 17 C C1' ADP . . . E 2 50.765 -7.798 -4.186 1 18.54 ? C1' ADP 301 B 1 HETATM 18 N N9 ADP . . . E 2 51.591 -8.264 -5.317 1 20.01 ? N9 ADP 301 B 1 HETATM 19 C C8 ADP . . . E 2 51.177 -9.021 -6.352 1 16.53 ? C8 ADP 301 B 1 HETATM 20 N N7 ADP . . . E 2 52.211 -9.261 -7.201 1 16.32 ? N7 ADP 301 B 1 HETATM 21 C C5 ADP . . . E 2 53.303 -8.641 -6.711 1 16.55 ? C5 ADP 301 B 1 HETATM 22 C C6 ADP . . . E 2 54.717 -8.48 -7.118 1 19.85 ? C6 ADP 301 B 1 HETATM 23 N N6 ADP . . . E 2 55.192 -9.052 -8.258 1 20.45 ? N6 ADP 301 B 1 HETATM 24 N N1 ADP . . . E 2 55.515 -7.754 -6.299 1 21.36 ? N1 ADP 301 B 1 HETATM 25 C C2 ADP . . . E 2 55.058 -7.179 -5.167 1 20.89 ? C2 ADP 301 B 1 HETATM 26 N N3 ADP . . . E 2 53.795 -7.272 -4.729 1 13.81 ? N3 ADP 301 B 1 HETATM 27 C C4 ADP . . . E 2 52.891 -7.985 -5.456 1 19.91 ? C4 ADP 301 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #