data_4TSF # _model_server_result.job_id pIeEYjPt3gZmqA4fPYFxig _model_server_result.datetime_utc '2024-11-28 03:19:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tsf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":600}' # _entry.id 4TSF # _exptl.entry_id 4TSF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TSF _cell.length_a 108.015 _cell.length_b 154.42 _cell.length_c 269.465 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TSF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 L N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 K MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 J O2G ATP . A ATP 600 1_555 K MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 J O2B ATP . A ATP 600 1_555 K MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc4 K MG MG . A MG 601 1_555 T O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 K MG MG . A MG 601 1_555 T O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc6 K MG MG . A MG 601 1_555 T O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc7 B OG1 THR 176 B THR 176 1_555 M MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc8 L O2G ATP . B ATP 600 1_555 M MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc9 L O3G ATP . B ATP 600 1_555 M MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc10 L O2B ATP . B ATP 600 1_555 M MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc11 M MG MG . B MG 601 1_555 U O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc12 M MG MG . B MG 601 1_555 U O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc13 M MG MG . B MG 601 1_555 U O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc14 C OG1 THR 176 C THR 176 1_555 O MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc15 N O2G ATP . C ATP 600 1_555 O MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc16 N O2B ATP . C ATP 600 1_555 O MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc17 O MG MG . C MG 601 1_555 V O HOH . C HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc18 O MG MG . C MG 601 1_555 V O HOH . C HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc19 O MG MG . C MG 601 1_555 V O HOH . C HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc20 D OG1 THR 165 D THR 163 1_555 Q MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc21 P O2B ADP . D ADP 600 1_555 Q MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc22 Q MG MG . D MG 601 1_555 W O HOH . D HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc23 Q MG MG . D MG 601 1_555 W O HOH . D HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc24 Q MG MG . D MG 601 1_555 W O HOH . D HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc25 Q MG MG . D MG 601 1_555 W O HOH . D HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc26 F OG1 THR 165 F THR 163 1_555 S MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc27 R O2B ADP . F ADP 600 1_555 S MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc28 R O3B ADP . F ADP 600 1_555 S MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc29 S MG MG . F MG 601 1_555 X O HOH . F HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc30 S MG MG . F MG 601 1_555 X O HOH . F HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc31 S MG MG . F MG 601 1_555 X O HOH . F HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc32 S MG MG . F MG 601 1_555 X O HOH . F HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 4TSF _atom_sites.fract_transf_matrix[1][1] 0.009258 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 5 ATP A 1 600 600 ATP ATP . K 6 MG A 1 601 601 MG MO6 . L 5 ATP B 1 600 600 ATP ATP . M 6 MG B 1 601 601 MG MO6 . N 5 ATP C 1 600 600 ATP ATP . O 6 MG C 1 601 601 MG MO6 . P 7 ADP D 1 600 600 ADP ADP . Q 6 MG D 1 601 601 MG MO6 . R 7 ADP F 1 600 600 ADP ADP . S 6 MG F 1 601 601 MG MO6 . T 8 HOH A 1 701 601 HOH MO6 . T 8 HOH A 2 702 601 HOH MO6 . T 8 HOH A 3 703 601 HOH MO6 . U 8 HOH B 1 701 601 HOH MO6 . U 8 HOH B 2 702 601 HOH MO6 . U 8 HOH B 3 703 601 HOH MO6 . V 8 HOH C 1 701 601 HOH MO6 . V 8 HOH C 2 702 601 HOH MO6 . V 8 HOH C 3 703 601 HOH MO6 . W 8 HOH D 1 701 601 HOH MO6 . W 8 HOH D 2 702 601 HOH MO6 . W 8 HOH D 3 703 601 HOH MO6 . W 8 HOH D 4 704 601 HOH MO6 . X 8 HOH F 1 701 601 HOH MO6 . X 8 HOH F 2 702 601 HOH MO6 . X 8 HOH F 3 703 601 HOH MO6 . X 8 HOH F 4 704 601 HOH MO6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 5 7.232 -12.358 -27.175 0.75 58.17 ? PG ATP 600 A 1 HETATM 2 O O1G ATP . . . J 5 7.338 -10.876 -27.444 0.75 57.93 ? O1G ATP 600 A 1 HETATM 3 O O2G ATP . . . J 5 6.378 -12.713 -25.982 0.75 57.73 ? O2G ATP 600 A 1 HETATM 4 O O3G ATP . . . J 5 8.555 -13.086 -27.225 0.75 58.41 ? O3G ATP 600 A 1 HETATM 5 P PB ATP . . . J 5 6.481 -14.46 -28.899 1 56.88 ? PB ATP 600 A 1 HETATM 6 O O1B ATP . . . J 5 7.787 -14.679 -29.619 1 56.35 ? O1B ATP 600 A 1 HETATM 7 O O2B ATP . . . J 5 6.11 -15.333 -27.724 1 57.04 ? O2B ATP 600 A 1 HETATM 8 O O3B ATP . . . J 5 6.4 -12.916 -28.44 1 57.38 ? O3B ATP 600 A 1 HETATM 9 P PA ATP . . . J 5 3.764 -14.632 -29.636 1 57.49 ? PA ATP 600 A 1 HETATM 10 O O1A ATP . . . J 5 3.396 -16.072 -29.366 1 57.24 ? O1A ATP 600 A 1 HETATM 11 O O2A ATP . . . J 5 3.469 -13.568 -28.606 1 57.18 ? O2A ATP 600 A 1 HETATM 12 O O3A ATP . . . J 5 5.327 -14.574 -30.014 1 57.28 ? O3A ATP 600 A 1 HETATM 13 O O5' ATP . . . J 5 3.09 -14.192 -31.031 1 57.39 ? O5' ATP 600 A 1 HETATM 14 C C5' ATP . . . J 5 3.438 -12.948 -31.639 1 57.14 ? C5' ATP 600 A 1 HETATM 15 C C4' ATP . . . J 5 2.354 -12.527 -32.625 1 57.31 ? C4' ATP 600 A 1 HETATM 16 O O4' ATP . . . J 5 2.314 -13.441 -33.727 1 57.37 ? O4' ATP 600 A 1 HETATM 17 C C3' ATP . . . J 5 0.968 -12.514 -31.992 1 57.47 ? C3' ATP 600 A 1 HETATM 18 O O3' ATP . . . J 5 0.343 -11.242 -32.194 1 58.16 ? O3' ATP 600 A 1 HETATM 19 C C2' ATP . . . J 5 0.202 -13.628 -32.682 1 57.43 ? C2' ATP 600 A 1 HETATM 20 O O2' ATP . . . J 5 -1.151 -13.253 -32.963 1 57.58 ? O2' ATP 600 A 1 HETATM 21 C C1' ATP . . . J 5 0.98 -13.901 -33.962 1 57.41 ? C1' ATP 600 A 1 HETATM 22 N N9 ATP . . . J 5 0.971 -15.347 -34.305 1 57.62 ? N9 ATP 600 A 1 HETATM 23 C C8 ATP . . . J 5 1.62 -16.32 -33.637 1 57.63 ? C8 ATP 600 A 1 HETATM 24 N N7 ATP . . . J 5 1.399 -17.531 -34.213 1 57.41 ? N7 ATP 600 A 1 HETATM 25 C C5 ATP . . . J 5 0.595 -17.341 -35.273 1 57.25 ? C5 ATP 600 A 1 HETATM 26 C C6 ATP . . . J 5 -0.023 -18.195 -36.317 1 57.15 ? C6 ATP 600 A 1 HETATM 27 N N6 ATP . . . J 5 0.184 -19.533 -36.337 1 56.96 ? N6 ATP 600 A 1 HETATM 28 N N1 ATP . . . J 5 -0.801 -17.591 -37.248 1 57.41 ? N1 ATP 600 A 1 HETATM 29 C C2 ATP . . . J 5 -1.021 -16.259 -37.247 1 57.44 ? C2 ATP 600 A 1 HETATM 30 N N3 ATP . . . J 5 -0.487 -15.43 -36.325 1 57.67 ? N3 ATP 600 A 1 HETATM 31 C C4 ATP . . . J 5 0.315 -15.898 -35.332 1 57.62 ? C4 ATP 600 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #