data_4TSK # _model_server_result.job_id s_BvGVeQpRvMLk_jSrmlPQ _model_server_result.datetime_utc '2024-11-23 20:55:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 4TSK # _exptl.entry_id 4TSK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TSK _cell.length_a 124.099 _cell.length_b 124.099 _cell.length_c 124.099 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 1 2 A,B,C,D,E,F,G 1 3 A,B,C,D,E,F,G 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -124.099 0 3 'crystal symmetry operation' 3_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0 0 -124.099 4 'crystal symmetry operation' 4_544 x,-y-1,-z-1 1 0 0 0 -1 0 0 0 -1 0 -124.099 -124.099 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 190 A ASP 190 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc2 A OD1 ASP 190 A ASP 190 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc3 A OD2 ASP 190 A ASP 190 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 A OE1 GLU 194 A GLU 194 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc5 A OE2 GLU 226 A GLU 226 1_555 C MG MG . A MG 402 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc6 A O ARG 247 A ARG 247 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc7 A O ILE 250 A ILE 250 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc8 A OD1 ASP 252 A ASP 252 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc9 A OE1 GLN 255 A GLN 255 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc10 B MG MG . A MG 401 1_555 G O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc11 C MG MG . A MG 402 1_555 E O2 TLA . A TLA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc12 C MG MG . A MG 402 1_555 E O4 TLA . A TLA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc13 C MG MG . A MG 402 1_555 G O HOH . A HOH 502 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc14 D MG MG . A MG 403 1_555 E O1 TLA . A TLA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc15 D MG MG . A MG 403 1_555 E O2 TLA . A TLA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc16 D MG MG . A MG 403 1_555 G O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc17 D MG MG . A MG 403 1_555 G O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 4TSK _atom_sites.fract_transf_matrix[1][1] 0.008058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 2 MG A 1 402 2 MG MG . D 2 MG A 1 403 3 MG MG . E 3 TLA A 1 404 4 TLA TLA . F 4 NDP A 1 405 5 NDP NAP . G 5 HOH A 1 501 25 HOH HOH . G 5 HOH A 2 502 41 HOH HOH . G 5 HOH A 3 503 32 HOH HOH . G 5 HOH A 4 504 14 HOH HOH . G 5 HOH A 5 505 30 HOH HOH . G 5 HOH A 6 506 12 HOH HOH . G 5 HOH A 7 507 31 HOH HOH . G 5 HOH A 8 508 35 HOH HOH . G 5 HOH A 9 509 20 HOH HOH . G 5 HOH A 10 510 27 HOH HOH . G 5 HOH A 11 511 3 HOH HOH . G 5 HOH A 12 512 47 HOH HOH . G 5 HOH A 13 513 2 HOH HOH . G 5 HOH A 14 514 21 HOH HOH . G 5 HOH A 15 515 36 HOH HOH . G 5 HOH A 16 516 34 HOH HOH . G 5 HOH A 17 517 28 HOH HOH . G 5 HOH A 18 518 38 HOH HOH . G 5 HOH A 19 519 39 HOH HOH . G 5 HOH A 20 520 29 HOH HOH . G 5 HOH A 21 521 7 HOH HOH . G 5 HOH A 22 522 44 HOH HOH . G 5 HOH A 23 523 48 HOH HOH . G 5 HOH A 24 524 5 HOH HOH . G 5 HOH A 25 525 10 HOH HOH . G 5 HOH A 26 526 40 HOH HOH . G 5 HOH A 27 527 42 HOH HOH . G 5 HOH A 28 528 17 HOH HOH . G 5 HOH A 29 529 9 HOH HOH . G 5 HOH A 30 530 11 HOH HOH . G 5 HOH A 31 531 6 HOH HOH . G 5 HOH A 32 532 8 HOH HOH . G 5 HOH A 33 533 13 HOH HOH . G 5 HOH A 34 534 15 HOH HOH . G 5 HOH A 35 535 16 HOH HOH . G 5 HOH A 36 536 18 HOH HOH . G 5 HOH A 37 537 19 HOH HOH . G 5 HOH A 38 538 22 HOH HOH . G 5 HOH A 39 539 24 HOH HOH . G 5 HOH A 40 540 26 HOH HOH . G 5 HOH A 41 541 33 HOH HOH . G 5 HOH A 42 542 37 HOH HOH . G 5 HOH A 43 543 43 HOH HOH . G 5 HOH A 44 544 45 HOH HOH . G 5 HOH A 45 545 46 HOH HOH . G 5 HOH A 46 546 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . F 4 -18.983 -46.853 -46.091 1 38.29 ? PA NDP 405 A 1 HETATM 2 O O1A NDP . . . F 4 -18.373 -48.113 -46.659 1 36.73 ? O1A NDP 405 A 1 HETATM 3 O O2A NDP . . . F 4 -20.178 -47.009 -45.162 1 39.45 ? O2A NDP 405 A 1 HETATM 4 O O5B NDP . . . F 4 -17.934 -46.066 -45.189 1 37.05 ? O5B NDP 405 A 1 HETATM 5 C C5B NDP . . . F 4 -18.308 -44.893 -44.496 1 40.37 ? C5B NDP 405 A 1 HETATM 6 C C4B NDP . . . F 4 -17.063 -44.248 -43.94 1 40.8 ? C4B NDP 405 A 1 HETATM 7 O O4B NDP . . . F 4 -17.384 -43.006 -43.335 1 39.59 ? O4B NDP 405 A 1 HETATM 8 C C3B NDP . . . F 4 -16.359 -45.035 -42.862 1 41.13 ? C3B NDP 405 A 1 HETATM 9 O O3B NDP . . . F 4 -14.95 -44.785 -43.047 1 41.64 ? O3B NDP 405 A 1 HETATM 10 C C2B NDP . . . F 4 -16.787 -44.379 -41.588 1 42.67 ? C2B NDP 405 A 1 HETATM 11 O O2B NDP . . . F 4 -15.857 -44.535 -40.532 1 47.17 ? O2B NDP 405 A 1 HETATM 12 C C1B NDP . . . F 4 -16.861 -42.94 -42.017 1 39.32 ? C1B NDP 405 A 1 HETATM 13 N N9A NDP . . . F 4 -17.728 -42.13 -41.155 1 41.37 ? N9A NDP 405 A 1 HETATM 14 C C8A NDP . . . F 4 -18.965 -42.478 -40.729 1 40.43 ? C8A NDP 405 A 1 HETATM 15 N N7A NDP . . . F 4 -19.499 -41.517 -39.968 1 38.43 ? N7A NDP 405 A 1 HETATM 16 C C5A NDP . . . F 4 -18.579 -40.535 -39.884 1 40.33 ? C5A NDP 405 A 1 HETATM 17 C C6A NDP . . . F 4 -18.46 -39.264 -39.223 1 38.83 ? C6A NDP 405 A 1 HETATM 18 N N6A NDP . . . F 4 -19.47 -38.829 -38.525 1 39.67 ? N6A NDP 405 A 1 HETATM 19 N N1A NDP . . . F 4 -17.388 -38.506 -39.353 1 45.14 ? N1A NDP 405 A 1 HETATM 20 C C2A NDP . . . F 4 -16.358 -38.919 -40.088 1 47.96 ? C2A NDP 405 A 1 HETATM 21 N N3A NDP . . . F 4 -16.385 -40.094 -40.704 1 45.02 ? N3A NDP 405 A 1 HETATM 22 C C4A NDP . . . F 4 -17.431 -40.925 -40.667 1 40.96 ? C4A NDP 405 A 1 HETATM 23 O O3 NDP . . . F 4 -19.277 -45.719 -47.196 1 38.45 ? O3 NDP 405 A 1 HETATM 24 P PN NDP . . . F 4 -19.482 -46.101 -48.742 1 35.32 ? PN NDP 405 A 1 HETATM 25 O O1N NDP . . . F 4 -18.089 -46.055 -49.346 1 39.32 ? O1N NDP 405 A 1 HETATM 26 O O2N NDP . . . F 4 -20.249 -47.389 -48.94 1 38.42 ? O2N NDP 405 A 1 HETATM 27 O O5D NDP . . . F 4 -20.329 -44.898 -49.343 1 38.35 ? O5D NDP 405 A 1 HETATM 28 C C5D NDP . . . F 4 -19.77 -43.603 -49.373 1 34.9 ? C5D NDP 405 A 1 HETATM 29 C C4D NDP . . . F 4 -20.357 -42.795 -50.52 1 35.54 ? C4D NDP 405 A 1 HETATM 30 O O4D NDP . . . F 4 -19.939 -43.349 -51.749 1 34.17 ? O4D NDP 405 A 1 HETATM 31 C C3D NDP . . . F 4 -21.898 -42.747 -50.62 1 35.21 ? C3D NDP 405 A 1 HETATM 32 O O3D NDP . . . F 4 -22.345 -41.448 -51.139 1 33.4 ? O3D NDP 405 A 1 HETATM 33 C C2D NDP . . . F 4 -22.24 -43.796 -51.64 1 35.25 ? C2D NDP 405 A 1 HETATM 34 O O2D NDP . . . F 4 -23.531 -43.637 -52.26 1 35.32 ? O2D NDP 405 A 1 HETATM 35 C C1D NDP . . . F 4 -21.078 -43.605 -52.617 1 35.35 ? C1D NDP 405 A 1 HETATM 36 N N1N NDP . . . F 4 -20.837 -44.786 -53.453 1 37.27 ? N1N NDP 405 A 1 HETATM 37 C C2N NDP . . . F 4 -20.618 -45.989 -52.841 1 39.39 ? C2N NDP 405 A 1 HETATM 38 C C3N NDP . . . F 4 -20.388 -47.129 -53.622 1 39.91 ? C3N NDP 405 A 1 HETATM 39 C C7N NDP . . . F 4 -19.99 -48.414 -52.963 1 35.66 ? C7N NDP 405 A 1 HETATM 40 O O7N NDP . . . F 4 -19.407 -49.194 -53.687 1 38.94 ? O7N NDP 405 A 1 HETATM 41 N N7N NDP . . . F 4 -20.077 -48.646 -51.662 1 36.86 ? N7N NDP 405 A 1 HETATM 42 C C4N NDP . . . F 4 -20.392 -47.037 -55.036 1 35.76 ? C4N NDP 405 A 1 HETATM 43 C C5N NDP . . . F 4 -20.605 -45.815 -55.63 1 36.49 ? C5N NDP 405 A 1 HETATM 44 C C6N NDP . . . F 4 -20.804 -44.696 -54.799 1 38.42 ? C6N NDP 405 A 1 HETATM 45 P P2B NDP . . . F 4 -16.175 -45.481 -39.251 1 47.05 ? P2B NDP 405 A 1 HETATM 46 O O1X NDP . . . F 4 -15.935 -44.551 -38.077 1 43.15 ? O1X NDP 405 A 1 HETATM 47 O O2X NDP . . . F 4 -15.253 -46.61 -39.526 1 44.07 ? O2X NDP 405 A 1 HETATM 48 O O3X NDP . . . F 4 -17.626 -45.878 -39.303 1 51.32 ? O3X NDP 405 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #