data_4TSY # _model_server_result.job_id JZgHJQSCfHi6pNyIGDukxQ _model_server_result.datetime_utc '2024-11-05 10:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4tsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":203}' # _entry.id 4TSY # _exptl.entry_id 4TSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.558 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[(E,2S,3R)-2-(hexanoylamino)-3-oxidanyl-dec-4-enoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4TSY _cell.length_a 151.337 _cell.length_b 199.879 _cell.length_c 120.58 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4TSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_355 -x-2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -302.674 0 60.29 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 DA N N ? 2 EA N N ? 2 FA N N # _chem_comp.formula 'C21 H44 N2 O6 P 1' _chem_comp.formula_weight 451.558 _chem_comp.id HXJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[(E,2S,3R)-2-(hexanoylamino)-3-oxidanyl-dec-4-enoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAE NBC HXJ sing 164 n n CAC NBC HXJ sing 165 n n NBC CAD HXJ sing 166 n n NBC CAU HXJ sing 167 n n CAU CAS HXJ sing 168 n n OAH CBA HXJ sing 169 n n CAN CAJ HXJ sing 170 n n CAN CAQ HXJ sing 171 n n CAK CAJ HXJ doub 172 e n CAK CBA HXJ sing 173 n n CAO CAQ HXJ sing 174 n n CAO CAL HXJ sing 175 n n CAS OAX HXJ sing 176 n n CBA CBB HXJ sing 177 n n CAL CAA HXJ sing 178 n n OAX PBD HXJ sing 179 n n CBB CAV HXJ sing 180 n n CBB NAW HXJ sing 181 n n OAY CAV HXJ sing 182 n n OAY PBD HXJ sing 183 n n PBD OAG HXJ doub 184 n n PBD OAI HXJ sing 185 n n NAW CAZ HXJ sing 186 n n CAZ OAF HXJ doub 187 n n CAZ CAT HXJ sing 188 n n CAR CAT HXJ sing 189 n n CAR CAP HXJ sing 190 n n CAM CAB HXJ sing 191 n n CAM CAP HXJ sing 192 n n CAA H1 HXJ sing 193 n n CAA H2 HXJ sing 194 n n CAA H3 HXJ sing 195 n n CAL H4 HXJ sing 196 n n CAL H5 HXJ sing 197 n n CAO H6 HXJ sing 198 n n CAO H7 HXJ sing 199 n n CAQ H8 HXJ sing 200 n n CAQ H9 HXJ sing 201 n n CAN H10 HXJ sing 202 n n CAN H11 HXJ sing 203 n n CAJ H12 HXJ sing 204 n n CAK H13 HXJ sing 205 n n CBA H14 HXJ sing 206 n n OAH H15 HXJ sing 207 n n CBB H16 HXJ sing 208 n n NAW H17 HXJ sing 209 n n CAT H18 HXJ sing 210 n n CAT H19 HXJ sing 211 n n CAR H20 HXJ sing 212 n n CAR H21 HXJ sing 213 n n CAP H22 HXJ sing 214 n n CAP H23 HXJ sing 215 n n CAM H24 HXJ sing 216 n n CAM H25 HXJ sing 217 n n CAB H26 HXJ sing 218 n n CAB H27 HXJ sing 219 n n CAB H28 HXJ sing 220 n n CAV H29 HXJ sing 221 n n CAV H30 HXJ sing 222 n n OAI H31 HXJ sing 223 n n CAS H32 HXJ sing 224 n n CAS H33 HXJ sing 225 n n CAU H34 HXJ sing 226 n n CAU H35 HXJ sing 227 n n CAD H36 HXJ sing 228 n n CAD H37 HXJ sing 229 n n CAD H38 HXJ sing 230 n n CAE H39 HXJ sing 231 n n CAE H40 HXJ sing 232 n n CAE H41 HXJ sing 233 n n CAC H42 HXJ sing 234 n n CAC H43 HXJ sing 235 n n CAC H44 HXJ sing 236 n n # _atom_sites.entry_id 4TSY _atom_sites.fract_transf_matrix[1][1] 0.006608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HXJ A 1 201 201 HXJ DRG . F 2 HXJ A 1 202 202 HXJ DRG . G 3 SO4 A 1 203 205 SO4 SO4 . H 3 SO4 A 1 204 206 SO4 SO4 . I 3 SO4 A 1 205 207 SO4 SO4 . J 3 SO4 A 1 206 1 SO4 SO4 . K 3 SO4 A 1 207 2 SO4 SO4 . L 3 SO4 A 1 208 3 SO4 SO4 . M 4 HTO A 1 209 11 HTO HTO . N 2 HXJ B 1 201 203 HXJ DRG . O 2 HXJ B 1 202 201 HXJ DRG . P 2 HXJ B 1 203 202 HXJ DRG . Q 3 SO4 B 1 204 205 SO4 SO4 . R 3 SO4 B 1 205 206 SO4 SO4 . S 3 SO4 B 1 206 207 SO4 SO4 . T 3 SO4 B 1 207 208 SO4 SO4 . U 3 SO4 B 1 208 4 SO4 SO4 . V 2 HXJ C 1 201 203 HXJ DRG . W 2 HXJ C 1 202 201 HXJ DRG . X 2 HXJ C 1 203 202 HXJ DRG . Y 2 HXJ C 1 204 203 HXJ DRG . Z 3 SO4 C 1 205 205 SO4 SO4 . AA 3 SO4 C 1 206 206 SO4 SO4 . BA 3 SO4 C 1 207 207 SO4 SO4 . CA 3 SO4 C 1 208 208 SO4 SO4 . DA 2 HXJ D 1 201 201 HXJ DRG . EA 2 HXJ D 1 202 202 HXJ DRG . FA 2 HXJ D 1 203 203 HXJ DRG . GA 3 SO4 D 1 204 205 SO4 SO4 . HA 3 SO4 D 1 205 206 SO4 SO4 . IA 3 SO4 D 1 206 207 SO4 SO4 . JA 3 SO4 D 1 207 208 SO4 SO4 . KA 5 HOH A 1 301 6 HOH HOH . KA 5 HOH A 2 302 8 HOH HOH . LA 5 HOH B 1 301 1 HOH HOH . LA 5 HOH B 2 302 3 HOH HOH . LA 5 HOH B 3 303 13 HOH HOH . LA 5 HOH B 4 304 14 HOH HOH . MA 5 HOH C 1 301 4 HOH HOH . MA 5 HOH C 2 302 7 HOH HOH . MA 5 HOH C 3 303 10 HOH HOH . MA 5 HOH C 4 304 11 HOH HOH . MA 5 HOH C 5 305 12 HOH HOH . MA 5 HOH C 6 306 16 HOH HOH . MA 5 HOH C 7 307 17 HOH HOH . NA 5 HOH D 1 301 2 HOH HOH . NA 5 HOH D 2 302 5 HOH HOH . NA 5 HOH D 3 303 9 HOH HOH . NA 5 HOH D 4 304 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA HXJ . . . X 2 -111.085 11.437 29.45 1 96.73 ? CAA HXJ 203 C 1 HETATM 2 C CAL HXJ . . . X 2 -111.132 12.965 29.72 1 97.11 ? CAL HXJ 203 C 1 HETATM 3 C CAO HXJ . . . X 2 -110.157 13.759 28.793 1 96.45 ? CAO HXJ 203 C 1 HETATM 4 C CAQ HXJ . . . X 2 -109.836 15.175 29.313 1 94.21 ? CAQ HXJ 203 C 1 HETATM 5 C CAN HXJ . . . X 2 -110.153 16.199 28.205 1 89.27 ? CAN HXJ 203 C 1 HETATM 6 C CAJ HXJ . . . X 2 -108.98 16.142 27.149 1 89.32 ? CAJ HXJ 203 C 1 HETATM 7 C CAK HXJ . . . X 2 -109.227 16.223 25.578 1 83.47 ? CAK HXJ 203 C 1 HETATM 8 C CBA HXJ . . . X 2 -108.039 16.181 24.506 1 80.75 ? CBA HXJ 203 C 1 HETATM 9 O OAH HXJ . . . X 2 -107.194 15.047 24.76 1 82.5 ? OAH HXJ 203 C 1 HETATM 10 C CBB HXJ . . . X 2 -108.428 16.114 22.967 1 74.52 ? CBB HXJ 203 C 1 HETATM 11 N NAW HXJ . . . X 2 -109.247 14.909 22.782 1 74.78 ? NAW HXJ 203 C 1 HETATM 12 C CAZ HXJ . . . X 2 -109.493 14.343 21.602 1 73.7 ? CAZ HXJ 203 C 1 HETATM 13 O OAF HXJ . . . X 2 -109.046 14.791 20.56 1 72.02 ? OAF HXJ 203 C 1 HETATM 14 C CAT HXJ . . . X 2 -110.264 13.023 21.69 1 75.73 ? CAT HXJ 203 C 1 HETATM 15 C CAR HXJ . . . X 2 -111.466 13.022 20.766 1 74.57 ? CAR HXJ 203 C 1 HETATM 16 C CAP HXJ . . . X 2 -111.555 11.612 20.115 1 78.86 ? CAP HXJ 203 C 1 HETATM 17 C CAM HXJ . . . X 2 -112.751 10.843 20.739 1 79.21 ? CAM HXJ 203 C 1 HETATM 18 C CAB HXJ . . . X 2 -112.453 9.33 20.563 1 81.55 ? CAB HXJ 203 C 1 HETATM 19 C CAV HXJ . . . X 2 -109.146 17.35 22.474 1 69.23 ? CAV HXJ 203 C 1 HETATM 20 O OAY HXJ . . . X 2 -108.273 18.079 21.582 1 66.33 ? OAY HXJ 203 C 1 HETATM 21 P PBD HXJ . . . X 2 -108.84 19.564 20.961 1 68.32 ? PBD HXJ 203 C 1 HETATM 22 O OAI HXJ . . . X 2 -110.102 20.19 21.961 1 62.56 ? OAI HXJ 203 C 1 HETATM 23 O OAG HXJ . . . X 2 -109.313 19.486 19.532 1 64.28 ? OAG HXJ 203 C 1 HETATM 24 O OAX HXJ . . . X 2 -107.569 20.566 21.067 1 62.47 ? OAX HXJ 203 C 1 HETATM 25 C CAS HXJ . . . X 2 -107.111 21.069 22.282 1 60.66 ? CAS HXJ 203 C 1 HETATM 26 C CAU HXJ . . . X 2 -106.226 22.295 22.023 1 60.12 ? CAU HXJ 203 C 1 HETATM 27 N NBC HXJ . . . X 2 -106.469 23.013 20.709 1 58.96 ? NBC HXJ 203 C 1 HETATM 28 C CAD HXJ . . . X 2 -105.651 24.246 20.676 1 58.22 ? CAD HXJ 203 C 1 HETATM 29 C CAE HXJ . . . X 2 -107.855 23.489 20.483 1 56.75 ? CAE HXJ 203 C 1 HETATM 30 C CAC HXJ . . . X 2 -106.022 22.209 19.545 1 60.65 ? CAC HXJ 203 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 30 #