data_4TT3
#
_model_server_result.job_id            9F6Jz71MG8ZP8k_8zqS0UA 
_model_server_result.datetime_utc      '2024-11-13 20:05:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4tt3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":600}' 
#
_entry.id    4TT3 
#
_exptl.entry_id    4TT3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4TT3 
_cell.length_a            108.385 
_cell.length_b            154.545 
_cell.length_c            272.04 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4TT3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    Decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 S N N 
? 8 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc2 K O2G ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc3 K O3G ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? 
metalc ? metalc4 K O2B ATP . A ATP 601 1_555 L MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc5 L MG MG . A MG 602 1_555 W O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc6 L MG MG . A MG 602 1_555 W O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc7 L MG MG . A MG 602 1_555 W O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc8 B OG1 THR 176 B THR 176 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc9 N O2G ATP . B ATP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc10 N O2B ATP . B ATP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc11 O MG MG . B MG 602 1_555 X O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc12 O MG MG . B MG 602 1_555 X O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc13 O MG MG . B MG 602 1_555 X O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc14 C OG1 THR 176 C THR 176 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc15 Q O2G ATP . C ATP 600 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc16 Q O2B ATP . C ATP 600 1_555 R MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc17 R MG MG . C MG 601 1_555 Y O HOH . C HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc18 R MG MG . C MG 601 1_555 Y O HOH . C HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc19 R MG MG . C MG 601 1_555 Y O HOH . C HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc20 D OG1 THR 165 D THR 163 1_555 T MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc21 S O2B ADP . D ADP 600 1_555 T MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc22 T MG MG . D MG 601 1_555 Z O HOH . D HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc23 T MG MG . D MG 601 1_555 Z O HOH . D HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc24 T MG MG . D MG 601 1_555 Z O HOH . D HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc25 T MG MG . D MG 601 1_555 Z O HOH . D HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc26 F OG1 THR 165 F THR 163 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc27 U O2B ADP . F ADP 600 1_555 V MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc28 V MG MG . F MG 601 1_555 BA O HOH . F HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc29 V MG MG . F MG 601 1_555 BA O HOH . F HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc30 V MG MG . F MG 601 1_555 BA O HOH . F HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc31 V MG MG . F MG 601 1_555 BA O HOH . F HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4TT3 
_atom_sites.fract_transf_matrix[1][1]    0.009226 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006471 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003676 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 5 ATP A 1 601 600 ATP ATP . 
L 6 MG A 1 602 601 MG MO6 . 
M 7 GOL A 1 603 2 GOL GOL . 
N 5 ATP B 1 601 600 ATP ATP . 
O 6 MG B 1 602 601 MG MO6 . 
P 7 GOL B 1 603 1 GOL GOL . 
Q 5 ATP C 1 600 600 ATP ATP . 
R 6 MG C 1 601 601 MG MO6 . 
S 8 ADP D 1 600 600 ADP ADP . 
T 6 MG D 1 601 601 MG MO6 . 
U 8 ADP F 1 600 600 ADP ADP . 
V 6 MG F 1 601 601 MG MO6 . 
W 9 HOH A 1 701 601 HOH MO6 . 
W 9 HOH A 2 702 601 HOH MO6 . 
W 9 HOH A 3 703 601 HOH MO6 . 
X 9 HOH B 1 701 601 HOH MO6 . 
X 9 HOH B 2 702 601 HOH MO6 . 
X 9 HOH B 3 703 601 HOH MO6 . 
Y 9 HOH C 1 701 601 HOH MO6 . 
Y 9 HOH C 2 702 601 HOH MO6 . 
Y 9 HOH C 3 703 601 HOH MO6 . 
Y 9 HOH C 4 704 23 HOH HOH . 
Z 9 HOH D 1 701 601 HOH MO6 . 
Z 9 HOH D 2 702 601 HOH MO6 . 
Z 9 HOH D 3 703 601 HOH MO6 . 
Z 9 HOH D 4 704 601 HOH MO6 . 
Z 9 HOH D 5 705 35 HOH HOH . 
AA 9 HOH E 1 501 8 HOH HOH . 
AA 9 HOH E 2 502 16 HOH HOH . 
AA 9 HOH E 3 503 48 HOH HOH . 
AA 9 HOH E 4 504 50 HOH HOH . 
AA 9 HOH E 5 505 54 HOH HOH . 
BA 9 HOH F 1 701 601 HOH MO6 . 
BA 9 HOH F 2 702 601 HOH MO6 . 
BA 9 HOH F 3 703 601 HOH MO6 . 
BA 9 HOH F 4 704 601 HOH MO6 . 
BA 9 HOH F 5 705 14 HOH HOH . 
BA 9 HOH F 6 706 20 HOH HOH . 
BA 9 HOH F 7 707 40 HOH HOH . 
BA 9 HOH F 8 708 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . S 8 15.369 11.794 -32.252 1 87.55 ? PB ADP 600 D 1 
HETATM 2 O O1B ADP . . . S 8 15.452 10.289 -32.352 1 85.7 ? O1B ADP 600 D 1 
HETATM 3 O O2B ADP . . . S 8 14.256 12.297 -31.367 1 87.87 ? O2B ADP 600 D 1 
HETATM 4 O O3B ADP . . . S 8 16.696 12.486 -32.045 1 87.36 ? O3B ADP 600 D 1 
HETATM 5 P PA ADP . . . S 8 14.317 13.703 -34.031 1 86.29 ? PA ADP 600 D 1 
HETATM 6 O O1A ADP . . . S 8 12.813 13.612 -33.952 1 85.32 ? O1A ADP 600 D 1 
HETATM 7 O O2A ADP . . . S 8 15.056 14.714 -33.187 1 85.2 ? O2A ADP 600 D 1 
HETATM 8 O O3A ADP . . . S 8 14.917 12.239 -33.732 1 87.46 ? O3A ADP 600 D 1 
HETATM 9 O O5' ADP . . . S 8 14.74 13.919 -35.569 1 87.49 ? O5' ADP 600 D 1 
HETATM 10 C C5' ADP . . . S 8 14.664 15.204 -36.183 1 88.37 ? C5' ADP 600 D 1 
HETATM 11 C C4' ADP . . . S 8 15.442 15.196 -37.495 1 88.27 ? C4' ADP 600 D 1 
HETATM 12 O O4' ADP . . . S 8 15.064 14.058 -38.273 1 88.04 ? O4' ADP 600 D 1 
HETATM 13 C C3' ADP . . . S 8 15.162 16.438 -38.33 1 88.34 ? C3' ADP 600 D 1 
HETATM 14 O O3' ADP . . . S 8 16.38 17.104 -38.681 1 87.76 ? O3' ADP 600 D 1 
HETATM 15 C C2' ADP . . . S 8 14.425 15.956 -39.566 1 88.72 ? C2' ADP 600 D 1 
HETATM 16 O O2' ADP . . . S 8 15.121 16.306 -40.768 1 89.42 ? O2' ADP 600 D 1 
HETATM 17 C C1' ADP . . . S 8 14.321 14.441 -39.433 1 88.52 ? C1' ADP 600 D 1 
HETATM 18 N N9 ADP . . . S 8 12.9 14.021 -39.306 1 88.78 ? N9 ADP 600 D 1 
HETATM 19 C C8 ADP . . . S 8 12.336 13.418 -38.241 1 88.35 ? C8 ADP 600 D 1 
HETATM 20 N N7 ADP . . . S 8 11.019 13.172 -38.468 1 88.96 ? N7 ADP 600 D 1 
HETATM 21 C C5 ADP . . . S 8 10.725 13.623 -39.699 1 89.82 ? C5 ADP 600 D 1 
HETATM 22 C C6 ADP . . . S 8 9.522 13.682 -40.564 1 90.72 ? C6 ADP 600 D 1 
HETATM 23 N N6 ADP . . . S 8 8.334 13.191 -40.142 1 90.93 ? N6 ADP 600 D 1 
HETATM 24 N N1 ADP . . . S 8 9.651 14.238 -41.792 1 91.79 ? N1 ADP 600 D 1 
HETATM 25 C C2 ADP . . . S 8 10.826 14.733 -42.236 1 91.6 ? C2 ADP 600 D 1 
HETATM 26 N N3 ADP . . . S 8 11.954 14.711 -41.498 1 90.98 ? N3 ADP 600 D 1 
HETATM 27 C C4 ADP . . . S 8 11.969 14.18 -40.249 1 89.98 ? C4 ADP 600 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    148 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#